Back pain is the leading cause of disability worldwide, entailing a significant socioeconomic impact. A primary source of back pain can be attributed to intervertebral disc (IVD) degeneration allowing nerve ingrowth, facet joint arthritis, disc bulging, and osteophyte formations that press on nearby nerve roots or the spinal cord. While...
Mycobacterium avium subsp. hominissuis (MAH) is a pervasive environmental bacterium that can cause opportunistic infections in humans. Among the most robust and hardy members of the Mycobacterium genus, M. avium can persist and thrive in a range of challenging environments, including many which place it in direct contact with humans....
This dissertation incorporates coalition formation and probabilistic planning towards a domain-independent automated planning solution scalable to multiple heterogeneous robots in complex domains. The first research direction investigates the effectiveness of Task Fusion and introduces heuristics that improve task allocation and result in better quality plans, while requiring lower computational cost...
Wine is particularly vulnerable to infection by Brettanomyces bruxellensis during or shortly after malolactic fermentation (MLF). While different methods and techniques enable winemakers to prevent wine spoilage due to this organism, no single intervention is universally sufficient. Moreover application of sulfur dioxide, the most commonly used of these methods, is...
Conventional wastewater treatment facilities using activated sludge, secondary clarifiers, and chlorine disinfection comprise a large portion of urban wastewater treatment practices in the United States. While highly adept at removing chemical, physical, and numerous biological contaminants, these treatment methods are ineffective at removing contaminants of emerging concern, such as antibiotics...
In this qualitative case study, the implementation of a student-centered model of teaching, “Design Thinking, is explored to understand the difficulties learners experience when studying a foreign language in formal learning environments. This study suggests that excessive concentration on factors of grammar, translation, pronunciation, vocabulary, and lack of speech activity...
Direct anthropogenic stressors have caused drastic declines in wildlife populations over the past two centuries. In the face of these threats, spillover of infectious disease from domestic animals and livestock into wildlife, and novel interactions between parasites and pathogens within wildlife communities, have further suppressed already vulnerable populations. As management...
Corals have multiple roles in maintaining ocean health and are some of the world’s most diverse ecosystems. The coral animal is host to a multitude of taxa, including symbiotic dinoflagellate algae, fungi, bacteria, protists, and viruses. Environmental stressors and disease agents can perturb the delicate balance of the coral host...
Phospholipase C-β (PLC-β) isozymes are key effectors in G protein-coupled
signaling pathways. Prior research suggested that some isoforms of PLC-β may exist
and function as dimers, but little is known about dimerization of PLC-β. Data from coimmunoprecipitation
assays of differentially-tagged PLC-β constructs and sizeexclusion
chromatography of native PLC-β support homodimerization...
Orthopaedic soft tissue degenerative diseases significantly affect the population, especially as it ages. Degeneration is characterized by a progressive loss of extracellular matrix (ECM) components necessary for the proper functioning of the tissues and joints, eventually leading to pain and dysfunction. In humans, the intervertebral disc (IVD) and tendon are...
Fluid-structure interaction (FSI) has been of significant research interest worldwide over the past several decades because of its variety of applications in both offshore and coastal engineering. Researchers analyzing FSI systems rely heavily on experimental tests in model scale in laboratories or large-scale sea trials. However, these tests are often...
Many low-income and first-generation community college students face disproportionate challenges in their quest for a college education. They typically balance multiple outside obligations, while being solely responsible for making these decisions without adequate knowledge, guidance, or support (Lyons, 2004). Many students begin college without ever having been responsible for their...
Global biodiversity decline is primarily driven by habitat loss. Deforestation, the primary driver of terrestrial habitat loss, is increasing worldwide, with the most significant impact in the world biodiversity hotspots. Sadly, specific knowledge of such impacts in biodiversity-rich but data-poor countries are still unknown, and many national and regional narratives...
Connectivity of fish populations is a crucial question for fisheries conservation and the development of spatial management plans. Both adult and larval movement define the extent and direction of ecological and evolutionary overlap between geographic regions and, therefore, how we define stocks for management purposes. Within that context, my work...
Fungi from the genus Chlorociboria are known for their production of the blue-green quinonic pigment xylindein. Extracted xylindein has been the subject of investigations ranging from fabric dying to use a coloring agent in paint, and shows potential as an organic semiconductor in organic photovoltaics (OPVs) and other technologies. However,...
Spalting fungi show strong potential as natural colorants on a variety of materials, specifically textiles and wood. Four species of spalting fungi are currently utilized in this manner: Scytalidium cuboideum, which produces a red pigment called draconin red, Scytalidium ganodermophthorum, that produces an unknown yellow pigment, and Chlorociboria aeruginosa and...
A distributed system is a network of multiple autonomous computational nodes designed primarily for performance scalability and robustness. The performance of a distributed system depends critically on how tasks and resources are distributed among the nodes. Thus, a main thrust in distributed system research is to design schemes for distributing...
Emerging research shows that individual differences in how people use technology sometimes cluster by socioeconomic status (SES) and that when technology is not socioeconomically inclusive, low-SES individuals may abandon it. To understand how to improve technology’s SES-inclusivity, we present a multi-phase case study on SocioEconomicMag (SESMag), an emerging inspection method...
While digital inclusivity researchers and software practitioners have been trying to address exclusion biases in Windows, Icons, Menus, and Pointers (WIMP) user interfaces (UIs) for a long time, little has been done to investigate if and how inclusive software design and its methods that have been devised for WIMP UIs...
An impediment to use of exotic and bioengineered trees in many places is their propensity for spread by pollen and/or seeds. Our laboratory has been using gene editing to induce mutations in floral genes as means to impart stable and reliable genetic containment when this is desirable from social (markets,...
Strawbreaker foot-rot is a major limiting factor to cost efficient winter wheat
production in the Pacific Northwest. Development of resistant cultivars has been
hindered by the lack of adequate levels of genetic resistance and screening techniques
which can consistently detect desired genotypes.
Studies were conducted to determine if the reported...
Researchers rely on bioeconomic models to guide research and generate fishery management advice for commercial fisheries. Due partly to a paradigm shift towards ecosystem based fishery management, increasing complexity in the characteristics of the problems has meant that bioeconomic simulation models are becoming more prevalent in the fisheries literature. However...
Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
Religious histories have always appropriated pre-existing symbol systems of religion into newer forms, often with the goal in mind to acculturate a population into a new cultural setting to reach a desired status quo of society. The problem with acculturation theory is that it is filled with teleological and quantitative...
Variation in cheese quality due to geographic location is important to cheese producers, consumers, and retailers on a global level. Understanding the impacts of geographic location of cheese plants may be useful to businesses for marketing, cost reduction, and quality improvement. Many aspects of variation due to geography have been...
This thesis examines the impacts of the COVID-19 pandemic on farms in the Willamette Valley. Using semi-structured interviews, this study analyzes the economic and social challenges created by the pandemic and the adaptation strategies farmers employed to build resilience within the food system. This study found that the farmers experienced...
Various natural language processing (NLP) tasks necessitate deep models that are fast, efficient, and small based on their ultimate application at the edge or elsewhere. While significant investigation has furthered the efficiency and reduced the size of these models, reducing their downstream latency without significant trade-offs remains a difficult task....
This essay is a reflection of my college experiences and that of other undocumented/DACAmented students at Oregon State University and in the United States (Dreamers). It includes a discussion of institutional support, my graduate school experience, lessons learned, plans for my future, and recommendations for institutional leaders at OSU.
Levee management has historically been considered a local governance issue. Many users of the Portland International (PDX) airport may have no knowledge that the airport is in a floodplain and is protected by a hundred year old levee. This study asked survey respondents across the U.S. how much they would...
Cases of pulmonary diseases caused by Mycobacterium avium complex (MAC) have increased over the years and have become a major health concern in Europe, Asia, and the United States. MAC, comprised of M. avium species and M. intracellulare, are found everywhere in the environment: in water sources and the soil....
The yeast Brettanomyces bruxellensis is the most important wines spoilage yeast encountered during winemaking as it can survive in wine for long periods, requires minimal nutrients for growth, and can be difficult to control. Brettanomyces produces two major spoilage products, the volatile phenols 4-ethylphenol (Band-Aid, medicinal smell) and 4-ethylguaiacol (smoke,...
From detailed fieldwork and biotite ⁴⁰Ar/³⁹Ar dating correlated with paleomagnetic analyses of lithic clasts, we present a revision of the stratigraphy, areal extent and volume estimates of ignimbrites in the Cerro Galan volcanic complex. We find evidence for nine distinct outflow ignimbrites, including two newly identified ignimbrites in the Toconquis...
Phagotrophic protists are major consumers of microbial biomass in aquatic ecosystems. However, biochemical mechanisms underlying prey recognition and phagocytosis by protists are not well understood. We investigated the potential roles of cell signaling mechanisms in chemosensory response to prey, and in capture of prey cells, by a marine ciliate (Uronema...
Microfinance, or the technique of lending small amounts of money to the world’s poor for productive activities, has become a popular strategy for poverty-alleviation, achieving legislative status as a development strategy in the U.S. in 2000 with the Microenterprise for Self-Sufficiency Act. However, microfinance has increasingly failed to achieve the...
Coastal flooding and erosion are major concerns for low lying coastal communities -- particularly in light of accelerated sea level rise and climate change. To improve quantitative understanding of the physical drivers of both flooding and coastal landscape change, this dissertation explores coastal morphodynamics bridging the land-sea interface on modally...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
Little research has been done in the area of adult Hispanics' transition to college, a complex and challenging process which marks a critical period in their lives. Research suggests adaptation difficulty may cause them to drop out of school usually before completion of the first terms. There is a lack...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
Published March 1982. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Previous studies indicated that fertigating with nitrogen (N) was more effective than using granular N fertilizers in production of northern highbush blueberry (Vaccinium corymbosum L.). To build on these findings, four studies were conducted in western Oregon to determine whether fertigation was also an effective method for applying other nutrients,...
Over the last two decades, archaeologists have documented the widespread ancient Maya practice of collecting cave formations (speleothems) from ritually important caves and transporting them to their settlements. Little is known about their specific uses within settlements, but it is hypothesized that these objects convey a degree of sanctity from...
To facilitate the evaluation and design of structures subjected to fluid loading, a study of fluid-structure interaction (FSI) using the particle finite element method (PFEM) is presented to approximate the responses and sensitivities of structures which interact with fluid. A wide range of structural types are permissible by making no...
A techno-economic analysis (TEA) was performed to evaluate the technology, cost, and resource use for algal biofuel production based on today’s economics and technology. The basic goal of this study is to develop a model to calculate the mass and energy balances and costs to produce 10 million gal of...
One of the largely undetected and untreated health conditions affecting the Latino population in the United States is depression. Although the onset of depression can be influenced by a variety of factors that differ among individuals, Latinos in the United States are subject to certain cultural-specific social and environmental stresses...
A three-part study was conducted into the impact of physiological and ecological variables on the net isotopic fractionation of hydrogen, α[subscript K₃₇], expressed in C₃₇ alkenones. First, alkenone-producer production, abundance, and export were characterized in the summertime Gulf of California and Eastern Tropical North Pacific using compound-specific, labeled in situ...
Basaltic volcanism provides a window into the Earth’s mantle. Seeing through this window requires seeing through the processes of magma genesis and evolution that distort the view. Radiogenic isotope ratios, and to a lesser extent incompatible elements and stable isotope ratios, allow us to see through these distortions and infer...
This dissertation is comprised of four studies on different elements of Populus biotechnology and genomic science: 1) growth improvement by recombinant DNA (rDNA) modification of gibberellin (GA) metabolism; 2) gene editing using zinc-finger nucleases (ZFNs); 3) induction of floral sterility by RNA interference (RNAi) of AGAMOUS (AG) gene homologs; and...
In the study of any developmental process, whether in plants, animals, or other models, it is prudent to consider the developmental position of the subjects being measured. This is generally not taken into consideration in grapevine studies despite a growing body of literature documenting that fruits within clusters develop and...
For much of history, U.S. schools have employed ideologies of assimilation and nationhood - involving an exchange of immigrants' ways of life for a homogenous American identity - as frameworks for their curriculum and language education programs. However, a new ideology of multiculturalism has gained popularity in recent decades. Multicultural...
Early life stages of many marine and diadromous fish species use sandy beach surf zones, which occur along >50% of the world's marine coastlines. This extensive habitat can provide juvenile fishes with an abundant supply of potential prey and the ability to hide from predators in its shallow turbid waters....
Low completion rates have created serious "leakage points" (Astin, 1988) and "severe hemorrhaging" (Lango, 1996) in higher education to a large number of Hispanics. Traditional research on college persistence, which has blamed the students' culture for low performance, is inaccurate. Little research has specifically investigated academic persistence from a cultural...
Several empirical formulas that may be used to estimate available
chilling are presented in this study. Many climatic parameters
were considered in the derivation of these formulas. One equation
employing only maximum and minimum temperatures had a coefficients
of correlation (R) and R² values of .978 and .957, respectively. This...
Haiti is far from achieving the UN goal of sanitation access for all; 20% Haitians have no sanitation access, and less than 0.1% of urban excreta is safely managed. Container-Based Sanitation (CBS) may be a key tool for achieving equitable sanitation coverage in Haiti’s cities. CBS is a sanitation strategy...
Reintroduction programs are increasingly being used to save animals from extinction and aid in their recovery. The California Condor (Gymnogyps californianus), one of the most endangered birds in the world, is a remarkable example of how reintroduction programs can help rapidly increase a species' population numbers and range following a...
Animals aggregate and interact in nonuniform and nonrandom patterns, which lead to group level characteristics that have important evolutionary and ecological consequences. Network analysis provides a useful conceptual framework for linking animal interactions at all scales from dyads to communities, to populations and ecosystems. Despite exciting theoretical and applied advances...
The Farnesoid X Receptor (FXR) is a member of the nuclear receptor superfamily of transcription factors that plays a key role in the regulation of bile acids, lipid and glucose metabolisms. The regulative function of FXR is governed by conformational changes of the ligand binding domain (LBD) upon ligand binding....
The demand for the development of sustainable energy is an all time high as we burn through limited fossil fuel reserves and as environmental concerns rise every year. Renewable energy sources such as wind and solar power have limitations due to inconsistent power supply that cannot meet the regular needs...
Specialized or secondary metabolism is a collection of pathways and small molecules that, while beneficial to an organism, are not strictly necessary for survival. Plants use secondary metabolites to, among other things, attract pollinators, defend against biotic and abiotic stressors, and form symbioses. Natural products from plants have seen an...
While primary use of Global Navigation Satellite System (GNSS) is positioning, navigation, and timing (PNT), various GNSS applications have emerged over the past decades that includes GNSS meteorology. GNSS meteorology is the remote sensing of the atmospheric constituents in the neutral atmosphere – mostly in the troposphere - using GNSS...
Learning Analytics and other branches of Educational Research such as Computing Education Research (CER) implicitly assume that students, especially college students, have no barriers to access learning platforms or software packages. This assumption may be attributed to such pervasive beliefs such as "everyone has a device", or "everyone can access...
Foodborne illness in the United States continues to be a complex and recurring issue despite our increased understanding of the pathogenic microorganisms responsible. Foodborne illness outbreaks and product recalls linked to pathogenic bacteria have been more frequent in the produce industry (e.g. fruits and vegetables) in the last ten years....
The objective of this investigation was to evaluate the
possibility of developing high yielding wheat cultivars whose flour
would result in acceptable loaf volumes for non-traditional bread
wheat growing areas. Spring wheat germplasm employed included high
protein hexaploid derivatives from Triticum dicoccoides, and
selections from Argentina with good bread milling...
During the 1400s – 1600s, spalted wood was an expensive commodity used in marquetry style artworks across primarily Germany and Italy. It fell out of favor during the Industrial Revolution, but is currently experiencing resurgence in popularity with US woodturners. How spalted wood is used, and what types of spalted...
Hub proteins bind a large number of partners to facilitate structural changes and downstream protein interactions. LC8, a highly conserved protein homodimer, is a unique hub that regulates the activity of proteins in a wide range of cellular processes by binding to intrinsically disordered regions. With many of these systems,...
Analytical chemistry is an essential qualitative and quantitative tool to describe foods and biomaterials and their changes during production, processing and distribution. In this work, rapid analytical procedures for the extraction and quantification of components in fluid milk and diatom fermentation broth were developed. Analytical methods to measure the concentration...
During the Colonial Period, in Mexico there was no rational
forest development policy and, as a result, forest resources were
squandered and to a considerable extent destroyed. During the
Nineteenth Century, a rational forest policy began to be promoted, but
in the end, it was translated into a policy of...
Environmental mycobacteria are important opportunistic pathogens for many hosts,
including humans, cattle, and fish. Two well-studied species are Mycobacterium
avium subsp. avium, a significant cause of disseminated bacterial disease in patients
with AIDS, and Mycobacterium avium subsp. paratuberculosis, the cause of Johne’s
disease in cattle. Many other species that are...
A method based on fatty acid (FA) analysis is used to profile microbial community structure (MCS). Various extraction protocols are available, which alter the types of FAs extracted from soils. The more time consuming but widely used protocol extracts only FAs from phospholipids (PLFA). This technique is desirable because PLFAs...
With the increasing international focus on transboundary cooperation as a part of the Sustainable Development Goal (SDG) Framework, there is global recognition of transboundary water cooperation as a tool for improved governance and management of transboundary surface and groundwaters. Yet, there is not an agreed upon definition of transboundary water...
Over time, Open Source Software (OSS) has become indispensable in the creation and upkeep of software products, serving as the fundamental building block for widely used solutions in our daily lives, including applications that enable communication, entertainment, and productivity. A sustainable OSS ecosystem is one that attracts and retains a...
To users, mobile touchscreen devices have appealing characteristics; among these characteristics is intuitiveness, which leads to mobile devices being used almost everywhere by almost everyone to accomplish almost anything. This statement, to some degree, holds for children too. Despite touchscreen devices’ intuitiveness and popularity, we don’t know much about how...
Two striking characteristics of human beings are the diversity of resources that we use to sustain our lives and the extent to which we engage in coordinated, collective efforts to obtain and consume these resources. Together, these two characteristics are the foundation of human subsistence patterns. In many remote Alaskan...
In this thesis, I examine Johan Galtung’s theory of violence and discuss how his concepts of cultural and structural violence helps explain the problem of direct violence among Mexican American youth. I argue that cultural violence, mainly dominant narratives of colonialism and masculinity, cause some Mexican American youth to act...
A major challenge to the study of the peopling of the Americas is that much of the Bering Land Bridge (Beringia), the geographic area that people migrating from Northeast Asia into North America would presumably have passed through, is now submerged due to sea-level rise since the last glacial maximum....
Over the course of the last century, a successful history of fire suppression has contributed to unsuccessful present day control over wildfire. In the absence of fire and the janitorial and ecological services it provides, drier inland forests are shifting in species composition and exceeding densities that cannot survive and...
This dissertation addresses the problem of recognizing human activities in videos. Our focus is on activities with stochastic structure, where the activities are characterized by variable space-time arrangements of actions, and conducted by a variable number of actors. These activities occur frequently in sports and surveillance videos. They may appear...
This research design was based upon the mutual relevance
between the fields of education and anthropology to cause cognitive
cultural awareness by the teachers of adults as well as visibility
within the Mexican American ethnic group.
Specifically the purpose of this study was twofold:. (1) to
determine whether the adult...
The spatial distribution and abundance patterns of benthic infauna result from interactions with a host of environmental variables including sediment characteristics (percent silt-clay, grain size, total organic carbon), depth, temperature, and dissolved oxygen. This thesis focuses on the association of bivalve assemblages and species with potentially influential environmental variables along...
The success of the U.S. government in persuading Japan to
liberalize the beef market is viewed as a relief to the U.S.
beef industry. The economic benefit (to the U.S. beef
producers!) of the trade liberalization however is yet to be
seen. The size of this benefit is determined, among...
In recent times, public policy debates in the United States have been very contentious and dysfunctional. To help improve this situation, a multi-discipline research effort was conducted to look at "solution papers" as a form of public participation. Specifically, the roles of objectivity and mutual respectfulness were under consideration. Foundational...