A new planktonic ecosystem model was constructed for the Eastern Bering Sea based on observations from the 2007–2010 BEST/BSIERP (Bering Ecosystem Study/Bering Sea Integrated Ecosystem Research Program) field program. When run with forcing from a data-assimilative ice-ocean hindcast of 1971–2012, the model performs well against observations of spring bloom time...
Large river plumes modify coastal environments and can impact production across multiple trophic levels. From 1999 to 2009, the
assemblages of forage fish, predator fish, and other pelagic nekton were monitored in coastal waters associated with the Columbia
River plume. Surveys were conducted at night to target vertically migrating species,...
The dynamics of lateral circulation in an idealized, straight estuary under varying stratification conditions is
investigated using a three-dimensional, hydrostatic, primitive equation model in order to determine the importance
of lateral circulation to the momentum budget within the estuary. For all model runs, lateral circulation is about
4 times as...
Turbulence controls the composition of river plumes through mixing and alters the plume's trajectory by diffusing its momentum. While believed to play a crucial role in decelerating river-source waters, the turbulence stress in a near-field river plume has not previously been observationally quantified. In this study, finely resolved density, velocity,...
Phytoplankton are a sentinel class of organisms in the marine environment. Through their photosynthetic activity in sunlit waters worldwide, phytoplankton shape the health and productivity of marine ecosystems and impact the global climate. In this work a range of ocean sensing technologies (via ships, surf zone sampling, moorings, gliders, and...
Microbial communities mediate the biogeochemical cycles that drive ecosystems, and it is important to understand how these communities are affected by changing environmental conditions, especially in complex coastal zones. As fresh and marine waters mix in estuaries and river plumes, the salinity, temperature, and nutrient gradients that are generated strongly...
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with salinity gave an R2 of 0.83 (p = 0.03). A similar trend with
salinity was observed for gene
The presence of predators and competitors can offer biotic resistance against the establishment of non-native species, including the European green crab, Carcinus maenas, (EGC) in the estuary of Coos Bay, Oregon. It has been suggested that limb loss, or autotomy of the EGC will increase in areas that include populations...
Current and hydrographic observations from the Coastal Mixing and Optics experiment moored array, deployed from August 1996 through June 1997, are used to describe the velocity variability and evaluate the dynamics of circulation over the New England shelf on timescales ranging from a few days to several months. Subtidal (days...
Across-shelf transects over the eastern flank of Barrow Canyon were obtained in August 2005 with an autonomous underwater vehicle (AUV). Here, the shelf topography creates a “choke” point in which a substantial portion of Pacific inflow from the Bering Strait is concentrated within 30 km of the coast, providing an...
It is well documented that microplastics and semi-synthetic particles (<5 mm) pervade the marine environment, with their ingestion by marine fauna eliciting global concern. While fishes exposed to microparticles in a laboratory setting have exhibited both sub-lethal and lethal effects, the diversity in material, morphology, and size of these contaminants...
Oyster reefs provide an array of ecosystem services. Specifically, they provide structurally complex habitat for fish and invertebrate species such as the commercially important Dungeness crab, Metacarcinus magister. This ecosystem service, once provided by the native oyster Ostrea lurida, is now provided by the commercially cultured oyster Crassostrea gigas in...
Wind-driven coastal upwelling brings subsurface water onto the central-Oregon shelf after the spring transition each year. This cold and salty source water is oxygen-poor, yet above the hypoxic threshold, dissolved oxygen < 1.4 ml l⁻¹. Once on the shelf, dissolved oxygen (DO) concentrations of upwelled near-bottom waters are modified by...
Inner-shelf circulation and mechanisms of across-shelf transport of water masses were examined using seven years of observations collected by the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) program, a long-term monitoring effort along the central Oregon coast. Since 1998, moored velocity and hydrographic measurements have been obtained during the...
Netarts Bay is a shallow, temperate, tidal lagoon located on the northern coast of Oregon and site of the Whiskey Creek Shellfish Hatchery (WCSH). Data collected with an automated flow-through system installed at WCSH capable of high-resolution (1 Hz) pCO2 and hourly TCO2 measurements, with measurement uncertainties of <2.0% and...
Understanding connectivity among exploited populations is critical to their sustainable management and long-term viability. In the marine environment, estimates of connectivity often rely on the use of genetic markers, as dispersal primarily occurs during a planktonic larval phase which is difficult to track using direct methods. In this thesis, we...
Pacific razor clams (Siliqua patula) are narrow oblong bivalves that can be found in sandy habitats along the western coast of the United States, from Alaska (Aleutian Islands) to southern California (Pismo Beach). In Washington state, the razor clam fishery has been documented to be an important contributor to the...
Continental margin sediments have been recognized as a major source of dissolved iron to the global ocean. The focus of this study was to build an early diagenetic model that can be used to simulate iron fluxes from continental margins and thereby identify key controlling factors. The model uses the...
Coastal hypoxia, or low oxygen episodes pose a threat to marine resources in the Pacific Northwest. Previous research into nearshore oxygen dynamics have linked coastal upwelling to this seasonally occurring phenomenon, however the manifestation of hypoxic waters over coastal fishing grounds was not well understood. Through a partnership with Dungeness...
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
A carefully calibrated primitive-equation model from 41°N to 48°N is used to study the poleward undercurrent off the US west coast. Chapter 2 describes poleward flow over the slope from Eulerian and Lagrangian perspectives. The model is robust, in the sense of several characteristics being qualitatively consistent with observational and...