The body of work aims to contribute to the area of Quantitative analysis in Environmental Sciences, and is focused on the microbiome. The underlying theme for the dissertation is methods and workflow. The unique bioinformatics workflow used for the analysis of genomic data was used to answer distinct and pressing...
The objective of this study was to identify aroma volatiles in sweet whey powder. Volatiles were isolated by solvent extraction and solvent assisted flavor evaporation. Fractionation was followed to separate acidic volatiles from nonacidic volatiles. Gas chromatography/olfactometry and gas chromatography-mass spectrometry were used for the identification ofaroma compounds. Osme methodology...
Cervical cancer is the fourth most common cancer in women worldwide with human papillomavirus (HPV) being the main cause the disease. Chromosomal amplifications have been identified as a source of upregulation for cervical cancer driver genes but cannot fully explain increased expression of immune genes in invasive carcinoma. Insight into...
The hypotheses of this research were (1) to test if
the antagonistic effect of ethanol on liver copper could
be seen within a short period when ethanol ingestion,
low dietary copper and high metabolic demand represented
by either pregnancy plus lactation or rapid growth are
simultaneously present and (2) to...
Many industrially important reactions use immobilized enzymes in non-aqueous, organic
systems, particularly for the production of chiral compounds such as pharmaceutical precursors.
The addition of a spacer molecule (“tether”) between a supporting surface and enzyme often
substantially improves the activity and stability of enzymes in aqueous solution. Most “long”
linkers...
'Marion' and 'Thornless Evergreen' blackberry volatiles were analyzed by capillary gas chromatography-flame ionization detection (GC-FED) and GC-mass spectrometry (GC-MS). Based on total percentage of FID area 'Thornless Evergreen' contains significantly more alcohols, hydrocarbons, and phenols than the 'Marion'; 'Marion' contains more acids and esters. Both cultivars contained comparable amounts of...
Wine volatile composition is one of the most important constitutes of wine quality, and it is greatly influenced by number of factors. The studies herein were conducted to evaluate the grape and wine aroma affected by different vine nutrient status, vigor and crop levels of Oregon Pinot noir.
In the...
One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire or compete for iron. We investigated the transcriptomic and proteomic effects of iron limitation on P. fluorescens Pf-5 by...
Background:
The number of people diagnosed with chronic physical conditions is increasing in the United States. Chronic mental illnesses are also common in the country. Low-income women and those on Medicaid bear a disproportionate burden of chronic conditions and these conditions significantly contribute to obstetric morbidity. Prioritizing preventive measures and...
Physical disturbance in streams has important effects on the metabolic rates of gross primary production (GPP) and ecosystem respiration (ER). Underlying lithology can control sediment size, amount, and evolution in the stream, influencing substrate stability and its effect on benthic organisms. We assessed the patterns of disturbance and recovery of...
Until the 1930s, flows of the Colorado River maintained approximately 781,060 hectares of wetlands in its delta. These wetlands provided important feeding and nesting grounds for resident and migratory birds as well as spawning and protection habitat for many fish and other invertebrate species. However, the Delta's wetlands started to...
The purpose of this study was to measure plasma B-6 vitamers, and other factors which may affect the plasma concentrations of these vitamers under extreme physical conditions. Blood samples were drawn from 8 men and 3 women (43.7 ± 8.6 years) 30 minutes prior to the start of a 50-km...
This study was undertaken to determine the sensory differences in high pressure vs. heat processed food systems after storage at ambient and refrigerated temperatures as determined by a trained sensory panel. Spanish rice and spaghetti with meat sauce were prepared and treated with heat and with high pressure processing (HHP)....
Maternally-derived transcripts and proteins support early bovine and ovine embryo development until the 8- to 16-cell stage, at which time embryonic transcripts become essential for continued development. One purported mechanism for the switch from maternal to zygotic control of development (maternal to zygotic genome activation; MZGA) is the appearance of...
Absorption of iron from foods has been reported to be inhibited by
various factors including some diet components. Fiber from different
sources has been observed to bind ferrous iron. This may be the reason
for iron deficiencies observed in populations that consume diets high in
non-digestible materials.
The effect of...
The yeast Brettanomyces bruxellensis is the most important wines spoilage yeast encountered during winemaking as it can survive in wine for long periods, requires minimal nutrients for growth, and can be difficult to control. Brettanomyces produces two major spoilage products, the volatile phenols 4-ethylphenol (Band-Aid, medicinal smell) and 4-ethylguaiacol (smoke,...
The objectives of this project were to investigate the chemical composition of five varieties of wine grape pomace (WGP) skins obtained in the Pacific Northwest of the United States with the emphasis on dietary fiber (DF) and polyphenolic compounds, and further to evaluate the feasibility of developing WGP extract based...
This dissertation consists of a general introduction, three research manuscripts, and general conclusions regarding the mapping of quantitative trait loci (QTLs) for sustainability traits in the Triticeae Coordinated Agricultural Project (TCAP) facultative/winter 6-rowed elite malting barley genome-wide association studies (GWAS) mapping panel, the TCAP FAC-WIN6. The first research manuscript, a...
The current rate of global biodiversity loss and extinctions is unparalleled and a major concern. Freshwater organisms are facing particularly rapid rates of biodiversity loss. Amphibians, which require an aquatic environment for part of their life cycle, are one of the most vulnerable vertebrate groups. Amphibians are experiencing population declines,...
Sediments of the central Chile margin record changes in ocean circulation and
continental erosion associated with large–scale climate change. Here Antarctic–
influenced Southern Ocean currents flow equatorward, forming a link between the high–
and low–latitude oceans. Part of this link, Antarctic Intermediate Water, is an important
conduit that ventilates South...
South Pacific humpback whales were devastated by commercial whaling in their Antarctic feeding areas during the 20th century. Understanding migratory connections and current abundance of these isolated breeding stocks is crucial for the allocation of historical Antarctic catches in population dynamic models used to assess current recovery. However, only a...
Brewers' spent grain (BSG), the byproduct from beermaking, is a good source of protein and dietary fiber and may be utilized as a functional ingredient for food applications such as bakery goods. Starch-based film is well-known for its safety, edibility, and renewability. Starch films with the incorporation of cellulose nanofiber...
Jalapeño peppers are usually consumed raw and fresh with minimal processing. They
contain antioxidants and bioactive compounds which are of human health benefits.
There have been an increasing number of reports of foodborne outbreaks attributed to
inaccessibility of sanitizers to Salmonella , E.coli and Listeria monocytogenes when
embedded in fruit...
The objectives of this research were to 1) evaluate the establishment and peak standing crop of Berber Orchardgrass (Dactylis glomerata var. "Berber"), Palestine Orchardgrass (Dactylis glomerata var. "Palestine"), and Sheep Fescue (Festuca ovina var. "Covar") ; 2) to assess establishment and production changes resulting from environmental gradients (elevation, slope, aspect,...
This thesis consists of three manuscripts addressing separate components of barley breeding, plus an introduction and a conclusion summarizing the status of barley in the Pacific Northwest, plus the implications of the research presented in this thesis. In the first manuscript, a package written for the statistical software "R" that...
Full Text:
, Dr.
Don Obert, Dr. Kevin P. Smith, and Dr. Stephen Ullrich contributed germplasm that was
Currently, the technologies used to separate lignocellulosic biomass into its component parts (cellulose, hemicellulose, and lignin) and enzymatically hydrolyze the cellulose to glucose for conversion to ethanol could be improved economically and in terms of efficiency. A major impediment to utilizing the biomass is the presence of residual lignin. The...
The present study examined the efficacy of a self-regulation intervention for children experiencing demographic risk. Utilizing a randomized controlled design, analyses examined if children (N = 276 children in 14 Head Start classrooms; M age = 51.69, SD = 6.55) who participated in an 8-week self-regulation intervention demonstrated greater gains...
Self-regulation, or an individual’s ability to control their emotions, behaviors, and cognitions, is one important factor of cognitive development during early childhood. The behavioral aspects of self-regulation have the potential to impact children’s success in formal education settings. Breastfeeding also has been shown to increase overall cognitive development at a...
The atomic solid state energy (SSE) scale is introduced as a tool for inorganic materials design. The SSE scale is obtained by assessing an average electron affinity (EA) (for a cation) or an average ionization potential (IP) (for an anion) for each atom using data from compounds having that specific...
'Marion' blackberry is known for having excellent aroma and flavor, yet they are susceptible to damage by freezing and they are very thorny. Thornless blackberry cultivars have been developed and show great potential. Thus, the interest of the study was in determining which of eight thornless blackberry cultivars, have similar...
Atherosclerosis is the underlying cause of ischemic heart disease and stroke and is the leading cause of death worldwide, especially in developed countries. As an inflammatory disease of arteries in a hyperlipidemic milieu, expression of adhesion molecules, such as endothelial-leukocyte adhesion molecule-1 (E-selectin) and intercellular adhesion molecule-1 (ICAM-1), on endothelial...
This thesis describes investigations of marine algal secondary metabolites, with particular interest in their biomedical and agrichemical potential. Invaluable in such pursuits have been the access and application of advanced spectroscopic techniques, such as NMR, and the ability to assess the biological activity of the algal samples in a variety...
(0) Save to: more options
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
Author(s): Howe, GT (Howe, Glenn T.)[ 1 ] ; Yu, JB (Yu, Jianbin)[ 1 ] ; Knaus, B (Knaus, Brian)[ 2 ] ; Cronn, R (Cronn, Richard)[ 2 ] ; Kolpak,...
Dual use pasture systems, sometimes referred to as dual purpose pasture systems, take advantage of the land being used to maximize multiple outputs from a single area. Developing a system to support both production of grazing livestock as well as pollinator health is of increasing importance in pasture-based farming systems....
Wheat is a staple food crop with many applications. The composition and quantity of major and minor flour components greatly influence functional dough properties, processing quality, and end-use suitability. Seven to 15% of the weight of wheat flour is protein and the gluten proteins comprise 80-85% of that. The gluten...
The present study examined if having an older sibling was significantly related to stronger selfregulation and achievement, in a sample of 74 preschool children participating in a selfregulation intervention. It was hypothesized that children with an older sibling in the fall would have higher self-regulation and achievement scores than children...
The Aquaculture Collaborative Research Support Program (ACRSP) has been actively engaged in aquaculture research, training, and outreach activities in more than 24 countries in Africa, Asia, and the Americas since its inception in 1982. These efforts, made successful through close collaboration between researchers and educators at US and Host Country...
Predatory lionfishes (Pterois volitans and P. miles) were introduced to Florida waters during the mid to late 1980s, and eventually established self-sustaining breeding populations in the tropical western Atlantic. These invasive species are now widespread along the southeastern seaboard of the United States, across the Caribbean Sea, and in the...
Full Text:
Abstract approved:
Mark A. Hixon
Predatory lionfishes (Pterois volitans and P. miles) were
Cytoplasmic dynein is a motor protein complex found in eukaryotes that is essential to many cellular processes. With dynein being involved in mitosis, axonal transport and organelle transport, disruption of dynein function can lead to neurodegeneration and other diseases. The main function of dynein is transportation of cargo through the...
Hazelnuts are commonly consumed raw and are valued for their numerous health benefits and antioxidant properties. Increased foodborne illness outbreaks associated with Salmonella and Escherichia coli O157:H7 contamination of tree nuts and peanuts generate a need for improving agricultural sanitation procedures. Food-safe chemical sanitizers have shown promise for reducing pathogenic...
Community colleges have become a practical educational option for undocumented students seeking an associate degree; thus reflecting the community college's very mission and purpose by providing access and affordability for these students. Specifically, undocumented Latino students are known to select community colleges due to their low tuition cost, proximity to...
This dissertation is concerned with the behavior of sulfur in intermediate-silicic arc magmas associated with subduction at convergent margins. In particular it focusses on oxidized, sulfur-rich magmas, the conditions at which they might reach sulfate saturation, and implications of sulfate saturation. It is divided into an investigation of natural samples...
The seasonal cycle of the near-surface circulation off central Chile was analyzed using satellite altimetry and an oceanic model. To evaluate the role of the wind stress curl on the circulation we performed two identical simulations except for the wind-forcing: the "control run" used long-term monthly mean wind stress and...
Red raspberry, Rubus idaeus L., is a valuable crop for the U.S. Pacific Northwest and clonal propagation is required to produce disease-free plants and for germplasm preservation. One challenge of red raspberry micropropagation is the wide variation in growth response among the cultivars. The studies described in this dissertation were...
Transition metal oxides are an important class of materials for the wide variety optical, electrical, dielectric, magnetic, and thermal properties observed. Their unique structure-property relationships allow for property tuning and often provide insight into the fundamentals of chemistry. The work in this thesis was focused on the design, synthesis and...
Cervical cancer is the fourth most common cancer in women worldwide with human papillomavirus (HPV) being the main cause of the disease. Currently available treatment methods are limited and emphasize the need for discovery of new therapies that improve patient outcome. Chromosomal amplifications have been identified as a source of...
Alzheimer’s Disease (AD) is a neurodegenerative pathology currently affecting nearly 44 million individuals worldwide, yet there are not currently any effective treatments or preventions for AD despite the rapid development in our understanding of the disease over the last four decades. The medical and sanitary innovations of the last century...
My work on computing complex catalyzed organic transformations reveals that only a few subtle chemical factors, e.g. non-classical hydrogen bonding, (hyper)conjugation and steric effects, common across different catalyst manifolds are critical for catalysis and selectivity. Rational manipulation and exploitation of these factors has led to improved catalyst designs, which has...
Hydrogen peroxide quantification is of broad interest due to the common use of hydrogen peroxide as an oxidizing agent in industrial processing and laboratory research. Hydrogen peroxide assays are also of general importance for biological studies aimed at understanding the role of in situ generated reactive oxygen species. In the...
Due to the high cost of precursor materials, complex oxides of 4d and 5d transition metals are under-studied compared to their 3d counterparts. Recent studies have shown that oxides containing heavier transition metals can exhibit exotic electronic states due to presence of strong spin-orbit coupling. The goal of this dissertation...