Diet History Questionnaires (DHQ) can only provide general information about a person’s nutritional intake. It is unable to cluster groups of people based on diets or lifestyles, nor identify specific foods that may play a role in disease prevention. The aim of this study was to validate the use of...
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Spectrometry Metabolomic Profiles of Human Urine.” Analytical Chemistry 86 (21): 10925–31. doi:10.1021
Empirical algorithms are developed using high-quality GO-SHIP hydrographic measurements of commonly measured parameters (temperature, salinity, pressure, nitrate, and oxygen) that estimate pH in the Pacific sector of the Southern Ocean. The coefficients of determination, R² , are 0.98 for pH from nitrate (pH^N) and 0.97 for pH from oxygen (pH^Ox)...
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., doi:10.1021/acs.analchem.5b04653.
Juranek, L. W., R. A. Feely, W. T. Peterson, S. R. Alin, B. Hales
A combination of batch fermentations and genome scale flux balance analysis were used to identify and quantify the rate limiting reactions in the xylulose transport and utilization pathway. Xylulose phosphorylation by xylulokinase was identified as limiting in wild type Saccharomyces cerevisiae, but transport became limiting when xylulokinase was upregulated. Further...
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identification of
bottlenecks. Biotechnol. Prog. 19, 1109–1117. http://dx.doi.org/10.1021/
bp0340180
Rapid Arctic warming is associated with important water cycle changes: sea ice loss, increasing atmospheric humidity, permafrost thaw, and water-induced ecosystem changes. Understanding these complex modern processes is critical to interpreting past hydrologic changes preserved in paleoclimate records and predicting future Arctic changes. Cyclones are a prevalent Arctic feature and...
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: determination of 13C/12C for carbon dioxide in
human breath. Analytical Chemistry 74, 2003–2007, doi:10.1021
Formation of cirrus clouds depends on the availability of ice nuclei to begin condensation of atmospheric water vapor. Although it is known that only a small fraction of atmospheric aerosols are efficient ice nuclei, the critical ingredients that make those aerosols so effective have not been established. We have determined...
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classification of individual bioaerosol
particles in seconds. Anal. Chem. 76, 373 (2004). doi:10.1021/ac034467e
Understanding charge transfer in organic semiconductors is important for developing devices like organic light emitting diodes and flexible electronics. Optical tweezers have been used in many disciplines for trapping, manipulating, and analyzing microscopic objects such as microspheres, micro-organisms, and other colloidal particles. Using optical tweezers, studies have measured the average...
Concentrations of polybrominated diphenyl ethers (PBDEs),
pesticides, polychlorinated biphenyls (PCBs), and polycyclic
aromatic hydrocarbons were measured in 136 fish from 14 remote
lakes in 8 western U.S. National Parks/Preserves between
2003 and 2005 and compared to human and wildlife contaminant
health thresholds. A sensitive (median detection limit, -18
pg/g wet...
Using a simple dry transfer process, I construct and characterize three nanoscale MoS2 devices using current-voltage curves, Raman spectroscopy, optical and atomic force microscopy. I compare these devices, the thinnest of which was few layer ( ≤ 10 nm) MoS₂ capable of showing photoconductance, with a current whose magnitude is...
Despite the availability of selenium (Se)-enriched trace mineral supplements, we have observed low Se status in cattle and sheep offered traditional inorganic Se supplements. Reasons for this may include inadequate intake or low bioavailability of inorganic Se sources. The objective of this study was to determine whether rumen microorganisms (RMO)...
Surface patterning of bacterial biofilm provides an opportunity to understand the microbial metabolic exchange between bacterial species. By using various techniques, one can put different bacterial species in close proximity and study their interaction by using various assay kits and analytical techniques. In this study, surface patterning of Pseudomonas aeruginosa...
Pumping water from coal seams decreases the pressure in the seam and in turn releases trapped methane; this is the most common and economic method of methane extraction. The water that is pumped out is known as "coal-bed methane water" (CBMW), which is high in sodium and other salts. In...
Laser-based spectroscopic techniques, such as cavity ring-down spectroscopy (CRDS), provide a new, cost effective and more widely available approach to measure the oxygen isotope ratio in water molecules, H₂¹⁸O/H₂¹⁶O (δ¹⁸O), and are used increasingly to measure δ¹⁸O in the world's oceans. Here, we present results from an interlaboratory comparison designed...
The dynamics of the Min-protein system help Escherichia coli regulate the process of cell division by identifying the center of the cell. While this system exhibits robust bipolar oscillations in wild-type cell shapes, recent experiments have shown that when the cells are mechanically deformed into wide, flattened out, irregular shapes,...
The efficacy of DNA extraction protocols can be highly dependent upon both the type of sample being investigated and the types of downstream
analyses performed. Considering that the use of new bacterial community analysis techniques (e.g., microbiomics, metagenomics) is becoming
more prevalent in the agricultural and environmental sciences and many...
The need for clean energy continues to rise as the earth’s non-renewable resources continue to be depleted to satisfy energy demands. One plausible renewable energy source exists in biomass-powered fuel cells.¹ While there are several ways to convert sugars to energy, one interesting approach is to convert the sugars to...
Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high...
Abstract: Coastal upwelling zones may be at enhanced risk from ocean acidification as upwelling brings low aragonite saturation state (Ω[subscript Ar]) waters to the surface that are further suppressed by anthropogenic CO₂. Ω[subscript Ar] was calculated with pH, pCO₂, and salinity-derived alkalinity time series data from autonomous pH and pCO₂...
There is no scientific consensus about how dissolved organic carbon (DOC) in surface waters is regulated. Here we combine recent literature data from 49 catchments with detailed stream and catchment process information from nine well established research catchments at mid- to high latitudes to examine the question of how climate...
Surface tensions of high-salinity solutions are significantly different from those of pure water. Our objective was to develop and test a methodology to determine whether these surface tension effects predictably alter imbibition into dry and moist porous media. Static and dynamic experiments were performed using four grades of quartz sand...
Aquifers are an important storage location and source of fresh groundwater. They may become polluted by a number of contaminants including mobile divalent radionuclides such as strontium-90 which is a byproduct of uranium fission. A method for remediating such divalent radionuclides is sequestration through co-precipitation into calcium carbonate. Calcium carbonate...
Metabolic defects within the different tissues and cell types of the eye give rise to many human ocular diseases. Polymorphisms in the Cytochrome P450 (CYP) family have been associated with many ocular disorders, particularly Cytochrome P450 1B1 (CYP1B1). Mutations in CYP1B1 have been linked to ocular diseases such as Primary...
Cannabis sativa L. is emerging as an economically important crop, particularly for its high levels of cannabinoid production. One of these cannabinoids, cannabigerolic acid (CBGA), is the precursor to many well-researched cannabinoids such as the psychotropic delta-9-trans-tetrahydrocannabinolic acid (Δ9-THCA i.e., THCA) and the medically relevant cannabidiolic acid (CBDA). CBGA has...
Wildfires are increasing in frequency. One area of research interest centers on the pollutants within wildfire smoke, including but not limited to particulate matter and polycyclic aromatic hydrocarbons. These chemicals are associated with exacerbation of respiratory, cardiovascular, dermatological, reproductive, oncological, gastrointestinal, and infectious conditions. As wildfires becoming increasingly prevalent, it...
There has been serious interest in hydrogen as a source of energy in the United States due to its capability of delivering a sustainable, carbon-free energy future. Currently, most hydrogen in the United States is produced via the steam methane reforming of natural gas, which converts methane to hydrogen through...
Ensuring sustainable development is a growing societal concern, providing rationale to examine the current role and efforts towards implementing sustainable building initiatives within the United States. Sustainable building initiatives refer to the design, operation, and maintenance of a building while considering its conservation efforts and pollution reduction performance. These initiatives...
Seasonal mountain snowpack of the western US (WUS) is a key water resource to millions of people. Impurities at the snow surface directly affect snowmelt timing and rate, as they contribute to earlier peak streamflow, snow disappearance, and less water availability in dry months. Predicting the locations, timing, and intensity...
Arctic warming is exposing thawing permafrost to repeated freeze-thaw, a disruptive process that can alter soil biogeochemistry and physical structure. To investigate the impact of permafrost exposure to freeze-thaw, soil response was tested across three scales: 2.5 cm³ aggregates, a forested hillslope, and two sites at contrasting latitudes. XCT imaging...
Lone Lake is an approximately ninety acre lake in Langley, WA on Whidbey Island. Since 2008, Lone Lake has experienced a number of harmful cyanobacterial blooms (cyanoHABs). Since 2016, however, the intensity of these cyanoHABs have impacted both ecosystem functions and human activities in the watershed. In June of 2020,...
Graphene and its derivatives are two-dimensional hexagonal lattices that possess desirable physicochemical properties leading to an ever-expanding list of industrial and biomedical uses. Graphene oxides (GOs) are becoming a popular graphene alternative and while there have been human safety studies, investigations of developmental toxicity are lacking. The use of distinct...
Microplastics (<5mm) are a ubiquitous environmental pollutant that have the potential to cause significant harm in many fish species. Therefore, understanding the quantities at which they are being consumed by living organisms is crucial for characterizing risk. There are currently gaps in the microplastic literature regarding microplastic data from finfish...
Atmospheric carbon reduction is arguably the most crucial facet among efforts to mitigate climate change. The Fifth International Panel of Climate Change report emphasizes a worldwide goal of maintaining global temperature elevation less than 1.5°C above pre-industrial temperatures. This report also acknowledges without the proper utilization of counteractive emission strategies...
Recently, there has been an expansion of large-scale studies looking at strain variation of Brettanomyces. These studies have found variation between strains in terms of utilization of maltose and production of volatile phenols. While there is research going into this subject, there is a gap in knowledge regarding the differences...
Patterns of primary productivity in the Arctic are expected to change with continued warming, yet productivity measurements are historically limited, both spatially and temporally. An established method of measuring net biological oxygen production, which can be used to estimate net community production (NCP) rates, is with an equilibrated inlet mass...
Condensers are vital components of power plants and are often one of the most major cost concerns when planning construction. Generally speaking, the surface area required to dissipate the heat generated in the boiler is so great that enormous and expensive structures are necessary. The usage of a hybrid surface...
Ammonia oxidation is the first and rate-limiting step in nitrification and is dominated by two distinct groups of microorganisms in soil: ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). AOA are often more abundant than AOB and dominate activity in acid soils. The mechanism of ammonia oxidation under acidic conditions has...
Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent
greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change.
Biological CH₄ production or methanogenesis is mostly performed by methanogens, a
group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂
plus...
Understanding the electrical transport properties of graphene provides a basis for determining its future as a potential semiconducting device that can be used for the next generation of transistors and photodetectors. Graphene p-n junctions can also function as field effect transistors, and thus are a logical starting point for I-V...
This is PMEL Contribution 4396.
Acidification has sparked discussion about whether regulatory agencies should place coastal waters on the Clean Water Act 303(d) impaired water bodies list. Here we describe scientific challenges in assessing impairment with existing data, exploring use of both pH and biological criteria. Application of pH criteria...
With the recent advent of commercial laser absorption spectrometers, field studies measuring stable isotope ratios of hydrogen and oxygen in water vapor have proliferated. These pioneering analyses have provided invaluable feedback about best strategies for optimizing instrumental accuracy, yet questions still remain about instrument performance and calibration approaches for multi-year...
With the recent advent of commercial laser absorption spectrometers, field studies measuring stable isotope ratios of hydrogen and oxygen in water vapor have proliferated. These pioneering analyses have provided invaluable feedback about best strategies for optimizing instrumental accuracy, yet questions still remain about instrument performance and calibration approaches for multi-year...
Space-based observations offer unique capabilities for studying spatial and temporal dynamics of the upper ocean inorganic carbon cycle and, in turn, supporting research tied to ocean acidification (OA). Satellite sensors measuring sea surface temperature, color, salinity, wind, waves, currents, and sea level enable a fuller understanding of a range of...
A detailed mechanism for the four-component RD387 gasoline surrogate developed by Lawrence Livermore National Laboratory has shown good agreement with experiments in engine-relevant conditions. However, with 1388 species and 5933 reversible reactions, this detailed mechanism is far too large to use in practical engine simulations. Therefore, reduction of the detailed...
Fluorescent proteins (FPs) are luminescent biomolecules that emit characteristic hues upon irradiation. A group of calmodulin (CaM)-green FP (GFP) chimeras have been previously engineered to enable the optical detection of calcium ions (Ca²⁺). We investigate one of these genetically encoded Ca²⁺ biosensors for optical imaging (GECOs), GEM-GECO1, which fluoresces green...
Pactamycin, although putatively touted as a potent antitumor agent, has never been used as an anticancer drug due to its high cytotoxicity. In this study, we characterized the effects of two novel biosynthetically engineered analogs of pactamycin, de-6MSA-7-demethyl-7- deoxypactamycin (TM-025) and 7-demethyl-7-deoxypactamycin (TM-026), in head and neck squamous cell carcinoma...
The goal of this research was to investigate the bitterness intensity of known hop acid oxidation products, humulinones and hulupones. This was carried out by first creating suitable extracts of humulinones and hulupones of high purity for sensory testing. Using previously established oxidation methods and the addition of preparative liquid...
The Escherichia coli sulfur starvation utilization (ssu) operon includes a two-component monooxygenase system made up of an NADPH-dependent FMN reductase, SsuE, and a monooxygenase, SsuD. SsuE is part of the flavodoxin-like superfamily, and we report here the crystal structures of its apo, FMN-bound and FMNH₂-bound forms at ~2 Å resolution....
The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists—all of which can combine to affect carbon and nutrient cycling and result in...
Water transient storage zones are hotspots for metabolic activity in streams although the contribution of different types of transient storage zones to the whole-reach metabolic activity is difficult to quantify. In this study we present a method to measure the fraction of the transient storage that is metabolically active (MATS)...
The isotopic compositions of interstitial waters collected from Hydrate
Ridge during Ocean Drilling Program Leg 204 were measured to
evaluate the fluid evolution of this accretionary prism. At shallow
depths, the dissolved Cl- concentrations and δD and δ¹⁸O values of the
interstitial water reflect changes in the salinity and the...
The human senses can be used as analytical tools to evaluate many different aspects of our daily lives. The use of our senses through organoleptic methods offers unique and powerful insights into the characteristics of different stimuli. Due to the unique function of the different sensory organs we use to...
Wine is particularly vulnerable to infection by Brettanomyces bruxellensis during or shortly after malolactic fermentation (MLF). While different methods and techniques enable winemakers to prevent wine spoilage due to this organism, no single intervention is universally sufficient. Moreover application of sulfur dioxide, the most commonly used of these methods, is...
High counts of fecal indicators, used to signal the potential presence of pathogens associated with untreated waste, result in the classification of water bodies throughout the United States as impaired. Nonpoint sources of unknown origin that contribute to fecal contamination make management of impaired waters challenging, as they are difficult...
The potential for nanomedicine to reduce toxicity and improve therapeutic response to radiation is vast. Clinically, this potential has thus far only begun to be realized with the recent success of the radioenhancing nanoparticle, NBTXR3 by Nanobiotix. Radioenhancing nanoparticles, however, represent only a small class of nanomaterials that may be...
Improving the understanding the relations of sustainability behaviors in manufacturing systems and actively engaging with manufacturers (especially SMEs) in sustainability efforts is key to the long-term success of U.S. industry and the natural environment. This study addresses this urgent need by establishing a systemic approach for the design of costing...
Globally rising anthropogenic CO₂ emissions have resulted in the increased prevalence of ocean acidification (OA) which has the potential to impact shell-forming organisms. On geologic timescales, the largest contributor to atmospheric CO₂ was volcanoes, counterbalanced by weathering and erosion, but due to increased anthropogenic emissions, these processes alone can no...
First recorded as a problem in 2003, wildfire smoke has been found to affect wine grapes and lead to alterations to a wine’s flavor profile. Smoke can carry organic volatile compounds over vast distances, which can then be deposited on grapes and are absorbed into the grape’s cells. These compounds...
Amorphous metal thin films (AMTFs) are of growing interest due to their unique mechanical properties and chemical stability. AMTFs have an advantage over polycrystalline metal films due to the lack of grain boundaries which gives AMTFs added durability and relatively smoother surfaces. For this reason, AMTFs have been investigated as...
Environmental modeling as a result of the Fukushima accident has been at the forefront for present day health physics. The accident released radionuclides in the environment and the fate and transport of these radionuclides are of interest when considering doses to non-human biota. The Pale Grass Blue Butterfly was studied...
Metal-oxo clusters are discrete, soluble pieces of bulk metal oxide. Cluster size, monodispersity, and chemical properties allow for potential use as solution-based precursors for functional metal oxide films. Classical monoalkyltin-oxo clusters are either charge neutral or stabilized by anions. The structure of Cs₄.₅H₂.₅[(BuSn)₃(α-SiW₉O₃₇)]*2H₂O enables its use in established ion exchange...
The extent and severity of wildfires in forested regions are increasing throughout many regions on the planet, including western North America. High-severity wildfires directly affect soils and vegetation by altering soil hydraulic properties, reducing soil organic matter, exporting carbon and nitrogen, and killing trees and understory vegetation. These impacts can...
Plant nurseries comprise the largest agricultural sector in Oregon at nearly $1 billion per year. Even at this scale, individual nurseries and greenhouses do not have clear water quality standards set by the EPA. Watershed-level total maximum daily loads (TMDLs) have been set for excess nutrients and herbicides due to...
Honey wine, also known as mead, is one of the oldest alcoholic beverages known to man. Made primarily from honey, water, and yeast, this beverage has recently been experiencing a resurgence in popularity. It is imperative that commercial producers focus on consistently creating quality products to differentiate themselves from competitors...
Atomically-thin graphene sheets have unprecedented characteristics for biosensing applications. These characteristics include mechanical flexibility and strength, optical transparency, electrical sensitivity and biocompatibility. The primary theme of this dissertation is the characterization and application of graphene field-effect transistors (FETs) in biologically-relevant physiological environments.Understanding the interface that forms between an electrolyte and...
Combustion emissions produced from burning real transportation fuels have many environmental impacts. However, detailed chemistry across multiple phases, time scales, and thermodynamic conditions make predicting combustion emissions challenging. Detailed modeling of the gas phase alone is prohibitively expensive, due to the large size and stiffness of the kinetic models. The...
Different educational modalities can affect students in learning challenging engineering concepts. Studies that specifically measure students’ conceptual learning gains have been conducted in face-to-face (F2F) and online modalities, but few direct comparisons have been reported. In this study, we collected data from undergraduate students enrolled in introductory materials science courses...
This edition contains research updates and a comprehensive list of publications summarizing research conducted by faculty of the Oregon Wine Research Institute at Oregon State University. Dr. Elizabeth Tomasino, OSU Associate Professor, opens the newsletter with an article on the influence of two compounds on Pinot noir aroma. Drs. Laurent...
Understanding the interplay between energy and water is central to effective natural resource management. With enough energy it is possible to secure sufficient water, with enough water it is possible to produce nearly boundless energy. The sun is the engine which drives the availability of both these resources; nearly every...
We have sufficient evidence that our historical management of natural resources is not sustainable. Food production is stagnating or declining. Nonrenewable energy sources on which the energy sector has historically depended are being rapidly depleted. Water resources, for which the energy and food sectors compete, are being depleted and impaired....
With Alzheimer’s disease being the most prominent form of dementia, finding potential treatments for the disease is imperative. This study explored the non-steroidal anti-inflammatory drug ibuprofen as a potential treatment to normalize the hyperactive N-methyl-d-aspartate receptor (NMDAR) within the 5xFAD mice early in the disease pathology before cognitive decline. Female...
Wildland urban interface (WUI) communities in the Western United States have recently dealt with historic and devastating wildfires year after year. The fires have cost tens of billions in damage, burned tens of thousands of structures, displaced thousands of residents, and killed over one hundred people. The 2017 Tubbs fire...
Dry-hopping has grown from a novel to widespread technique in commercial craft beer production. It yields large returns in aroma that cannot be emulated with kettle hopping. However, it also leads to beer refermentation post-dry-hopping, a phenomenon colloquially referred to by U.S brewers as “hop creep.” This is a result...
The clean cookstove sector has long sought the tools and analysis methods needed to accurately quantify social, environmental, and economic impacts of projects in diverse settings. To respond to this need, Climate Solutions Consulting and Oregon State University have developed a novel integrated suite of sensors to collect fuel usage...
Contextualization is a curricular approach and a learning process in which science content knowledge is intentionally situated within a context where that knowledge can be authentically applied or observed. Many recent science education reforms include contextualization as a central tenet. Our goal in this review was to examine commonalities across...
This thesis focuses on the investigation of extraterrestrial tracers Ir, Pt and 3He in polar ice cores. These tracers may be used to identify characteristics of interplanetary dust particles, and to quantify the flux of extraterrestrial material during impact events, certain volcanic eruptions, and stable background periods. In the first...
The budding yeast Brettanomyces bruxellensis has the potential to spoil fermented beverages and cause financial losses, but also contribute positively to certain products such as Lambic beer. It is most notorious for causing “Brett” spoilage of wine, which is characterized by undesirable aromas such as “bandaid” and “barnyard”, therefore most...
Nitrous oxide is an important greenhouse gas that has both natural and anthropogenic sources in the modern atmosphere (Ciais et al., 2013). This project expanded the knowledge of the history of atmospheric N2O in the geologic past by measuring N2O concentrations in air trapped in very old polar ice. A...
In industry, there is considerable interest in finding sustainable, renewable materials for use in electronic devices. Pigments derived from spalting fungi are of particular interest due to their longevity in diverse environmental conditions. The focus of my project was to characterizethe properties of a novel, fungi-derived pigment, and to discover...
Removing nitrogen from wastewater is critical to avoid eutrophication of receiving waters. Due to its potential economic benefits, the use of anammox bacteria to remove nitrogen from wastewater is gaining in popularity. Anammox bacteria utilize NO₂- to oxidize NH₄+ to N₂. However, anammox bacteria are sensitive to a wide variety...
Energy recovery ventilators (ERVs) are an effective way to reduce energy consumption in buildings while satisfying ventilation standards. As membrane technology and manufacturing methods improve, membrane based ERVs are seeing increased market penetration. In the present study, the feasibility of membrane ERV designed to fit in a commercial building wall...
Our society today is heavily dependent on fossil fuels such as coal and oil. However, growing environmental concerns and future fossil fuel supplies have led to interests in alternative fuels. Dimethyl Ether (DME) is an inexpensive, clean-burning, non-toxic, and potentially renewable fuel, making it a suitable choice as an alternative...
Nowadays, woody biomass is becoming increasingly significant because of its renewability and biodegradability. Lots of opportunities have been found to use excessive biological resources to derive products as diverse as fuels, heat, electricity, chemicals, food, clothing, paper, and much more. As such, biomass plays an important role in meeting demands...
BackgroundEpidemiological evidence suggests that arsenic (As) exposure during pregnancy may reduce infant birth weight. One significant source of As exposure is diet; thus, As may indirectly affect infant growth by mediating the effect of maternal diet on birth weight (BW). This study evaluated the potential mediating effect of As in...
A number of governance mechanisms address socio-environmental challenges associated with commodity agriculture in tropical forested countries. Governance mechanisms that prove effective in one agricultural sector are often applied to other sectors as well. For example, voluntary certification programs have been adopted by producers of commodities as diverse as beef, coffee,...
To optimize storage quality of 'd'Anjou' pears (Pyrus communis L.) produced in the US Pacific Northwest regions, the recommended harvest maturity as indicated by flesh pressure is 67 to 58 N. Over-mature pears are more susceptible to superficial scald and inferior eating quality after storage. However, a significant portion of...
Thiamin diphosphate (ThDP), also known as vitamin B1, serves as an enzymatic cofactor in glucose metabolism, the Krebs cycle, and branched-chain amino acid biosynthesis in all living organisms. Unlike plants and microorganisms, humans are not able to synthesize ThDP de novo and must obtain it from their diet. Staple crops...
Micronutrient deficiency, also known as the hidden hunger, affects over two billion people worldwide. Potato is the third most consumed food crops in the world, and is therefore a fundamental element of food security for millions of people. Increasing the amount of micronutrients in food crop could help alleviate worldwide...
Methane fluxes into the oceans are largely dependent on the methane phase as it migrates upward through the sediments. Here we document decoupled methane transport by gaseous and aqueous phases in Storfjordrenna (offshore Svalbard) and propose a three-stage evolution model for active seepage in the region where gas hydrates are...
The Micralyne microfluidic toolkit (μTK) was an instrument built by Micralyne in the early 2000’s. It was built for electrophoresis and has a sensitive laser-induced fluorescence detection system. The updates to the system were upgrading the control GUI from running in LabVIEW 5 (Windows XP, 2000) to LabVIEW 2012 (Windows...
Natural products (secondary metabolites) are small organic molecules derived
from plants, microbes, and marine organisms that have served as a diverse source of
useful compounds pharmaceuticals. New biologically active natural products are critical
as anti-infective and cancer drug leads. Cyanobacteria, or blue-green algae, produce
diverse cytotoxic metabolites that represent potential...
Root-knot nematodes (Meloidogyne spp.) are one of the most important global plant pathogens. Recent innovations in molecular techniques have allowed increased study of this important pest, including the ability to investigate associated microbiomes. This study used 16S rDNA metagenomic sequencing to characterize the microbiome of Meloidogyne hapla, the northern root-knot...
BACKGROUND: Half the world’s population lives in urban areas. It is therefore important to identify
characteristics of the built environment that are beneficial to human health. Urban greenness
has been associated with improvements in a diverse range of health conditions, including birth
outcomes; however, few studies have attempted to distinguish...
Cells in three-dimensional (3D) environments exhibit very different biochemical and biophysical phenotypes compared to the behavior of cells in two-dimensional (2D) environments. As an important biomechanical measurement, 2D traction force microscopy can not be directly extended into 3D cases. In order to quantitatively characterize the contraction field, we have developed...
Accessions of common wheat (Triticum aestivum
L. subsp. aestivum) from the USDA–ARS
National Small Grains Collection (NSGC) are a
resource for wheat scientists worldwide. The
genetic diversity of the wheat core subset, representing
approximately 10% of the collection’s
42,138 T. aestivum accessions, was examined
using 390 diversity arrays technology (DArT)...
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Perchlorate is a common aquatic contaminant that has long been known to affect thyroid function in vertebrates, including humans. More recently perchlorate has been shown...
Headwater streams comprise nearly 90% of the total length of perennial channels in global catchments. They mineralize organic carbon entering from terrestrial systems, evade terrestrial carbon dioxide (CO₂ ), and generate and remove carbon through in-stream primary production and respiration. Despite their importance, headwater streams are often neglected in global...
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(19), 7364–7369, doi:10.1021/es900416h.
Öquist, M., et al. (2014), The full annual carbon balance of
Thiamin diphosphate (ThDP), also known as vitamin B1, serves as an enzymatic cofactor in glucose metabolism, the Krebs cycle, and branched-chain amino acid biosynthesis in all living organisms. Unlike plants and microorganisms, humans are not able to synthesize ThDP de novo and must obtain it from their diet. Staple crops...
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. 129, 2914–2922. doi:
10.1021/ja067606t
Chatterjee, A., Li, Y., Zhang, Y., Grove, T. L., Lee, M
We introduce methods and software for estimating total seawater alkalinity from salinity and any combination of up to four other parameters (potential temperature, apparent oxygen utilization, total dissolved nitrate, and total silicate). The methods return estimates anywhere in the global ocean with comparable accuracy to other published alkalinity estimation techniques....
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carbon. Environ. Sci. Technol.
49: 3628–3635. doi:10.1021/es5047183
Galbraith, E. D., and others. 2015
Blueberry pomace (BP) and cranberry pomace (CP) are good sources of dietary fiber and phenolics. This study aimed to develop berry fruit pomace-fortified specialty mustard with elevated bioactive compounds. Wet BP and CP were ground and incorporated into Dijon-style mustard at concentrations of 15, 20, and 25% (w/w). Total dietary...
To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Poor aqueous solubility of a large number of newly discovered chemical entities is posing a significant challenge for the formulation industry and is delaying their drug development. The number of formulation techniques available to solubilize these poorly soluble molecules is very limited. In addition to that, traditional formulation methods involve...