The number of discussions about sustainable fisheries is increasing world-wide. The crisis in a lot of big fisheries, e.g. cod fishery on the Grand Banks, salmon fisheries along the pacific coast of the USA and Canada, must lead to different management regimes.
In the paper I describe different concepts for...
Anthropogenic land-cover change and climate change are the major drivers of the steep loss of avian biodiversity in past decades. Loss of avian biodiversity is predicted to result in the reduction of ecosystem services and ecological functions. Identifying avian population changes and the drivers of these trajectories is essential for...
Quaking aspen (Populus tremuloides Michx.), a widespread and keystone tree species in North America, experienced heat and drought stress in the years 2002 and 2003 in the southwestern United States. This led to widespread aspen mortality that has altered the composition of forests, and is expected to occur again if...
Investigation into how animals move within the landscape is important for both understanding of ecological processes and conservation management. Animal movement is important in shaping life history transitions, demographics, individual fitness, and species distributions. However, as landscapes become increasingly affected by human activities, movement becomes important as species navigate landscapes...
The current rate of global biodiversity loss and extinctions is unparalleled and a major concern. Freshwater organisms are facing particularly rapid rates of biodiversity loss. Amphibians, which require an aquatic environment for part of their life cycle, are one of the most vulnerable vertebrate groups. Amphibians are experiencing population declines,...
Gene regulation is a complex mechanism that controls the spatial and temporal expression of genes in a living cell. My dissertation studies focus on two problems. First, tissue-specific gene expression prediction from DNA sequence and chromatin state, and second, the accurate discovery of small over-represented regulatory circuits in gene regulatory...
This dissertation addresses the problem of video labeling at both the frame and pixel levels using deep learning. For pixel-level video labeling, we have studied two problems: i) Spatiotemporal video segmentation and ii) Boundary detection and boundary flow estimation. For the problem of spatiotemporal video segmentation, we have developed recurrent...
The western United States has experienced large-scale degradation due to land use and land cover changes, invasion of annual grasses, and expansion of woody plants into grass and shrublands and the resultant altered fire regimes. These landscape-scale changes have coincided with declining mule deer (Odocoileus hemionus) populations, making habitat loss...
My dissertation title is, “Applied economic strategies to evaluate policies and environmental outcomes: case studies from immigration and ecosystem services.” The first two chapters of this dissertation concern the relationship between local immigration policies and societal welfare. The third chapter examines the impact of human activity on the environment and...
Transformation is a major bottleneck for genetic engineering and gene editing in forest tree species. This includes most genotypes of Populus and Eucalyptus, which are some of the world’s most widely-cultivated genera of plantation forest trees. To provide new tools for transformation, I tested the transcription factor-protein chimera consisting of...
Human alteration of natural landscapes leads to biodiversity loss, often from a combination of area effects and fragmentation effects. Smaller habitat patches support fewer species than large ones and incur additional consequences from isolation. Efforts to preempt biodiversity loss from insular habitat fragments are complicated by individualistic species responses and...
The Pacific coast groundfish fishery is a diverse, important and lucrative commercial and recreational fishery. Part of this fishery’s monitoring process includes regular fishery-independent surveys for stock assessment. Although these fishery-independent surveys are cost-effective, they are susceptible to scientific uncertainty, and they do not currently sample in nearshore (water depth...
In this thesis, I examine the experiences of breastfeeding mothers who chose to give birth with Certified Professional Midwives at a free-standing birth center, and the factors that influence their known high rates of breastfeeding initiation and duration. Using grounded theory and data collected from participant observation, semi-structured interviews, and...
This thesis examines the characterization of the femme fatale and the implications of this trope for late-Victorian gender and sexuality in the ghost stories of female aesthete Vernon Lee. In her treatment of the femme fatale figure, Lee both reinforces and complicates the image of the sexualized, often bestialized woman...
The Oregon coast faces complex environmental and social challenges, such as the threat of a regionally disastrous Cascadia Subduction Zone (CSZ) earthquake and tsunami. Researchers are united in their assertion that the CSZ is new, the region is due for a quake, and to mitigate this hazard society must collaborate...
Energetic resources transferred between distinct habitats or ecosystems, referred to as allochthonous resources, can greatly subsidize consumers in the recipient habitat, and thus influence food web structure and dynamics. Such subsidies may allow the growth of the consumer population to be decoupled from in situ productivity with effects on consumer...
In this dissertation, I explore how women and men in later life experience the world of dating and the pursuit of new intimate relationships. Although the mortality gap between women and men at older ages is narrowing, as they enter their 70s, 80s, and 90s, there are still at least...
The spatial distribution and geologic histories of submarine volcanoes provide insight into submarine eruptive behavior, deep earth processes and plate tectonics. This dissertation examines the evolution of individual submarine volcanic edifices as well as linear trails of seamounts at three spatial and temporal scales.
In order to understand constructive and...
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volcanoes on time scales of decades I present a study of the eruptive behavior and
geology of NW Rota-1
Climate change impacts everyone’s food and water security. Increasing global temperatures accelerate the hydrologic cycle and consequently impact the water resources for billions of people worldwide. Countless models have been developed to represent various components of the hydrologic cycle at various spatial and temporal scales. These are often validated against...
Wild turkeys (Meleagris gallopavo) were first successfully introduced into Oregon and Washington in the 1960s; the population has grown in size and expanded in distribution to a point where it provides an important recreational hunting opportunity in both states that generates significant funds for habitat conservation and contributes financially to...
Globally, the number of threatened species is increasing and conserving them is a high priority to the scientific community. Assessing the status of these protected species is challenging due to missing, contested, and or contradictory data streams. Integrated models (IMs) provide a statistical framework for combining disparate data sources to...
Celebrity culture is part of a long history of fame, but the modern celebrity individual came into focus in the nineteenth century. The first part of this thesis distinguishes modern celebrity – including its morality – from other types of fame, explores the intersection of celebrity and gender through the...
The constitutive behavior of high-performance fiber-reinforced cementitious composites (HPFRCCs) under mechanical loading is characterized by significant tensile properties that play an essential role in the structural response of several applications in structural engineering. The significance of tensile properties of HPFRCCs in structural engineering is the focus of three manuscripts presented...
Household food availability is comprised of both food purchases and foods obtained from alternative sources, like social networks, community services, and household food production. While the food available at home is associated with eating behaviors, diet quality, and health outcomes of children and adults, the literature on food acquisition of...
Utilizing anti-racist feminist research methodologies, Making Sense of Social Justice Education: A Case Study of the Difference, Power, and Discrimination Program, argues that institutions of higher education must attend to local histories of student activism and faculty development in their efforts to create social justice-informed structural change. Increasingly colleges and...
This dissertation aims to elicit how a neo-colonial context shapes maternal and infant heath (MIH) outcomes by describing how they are socially, politically, historically, and culturally produced. Using a multi-level critical biocultural, medical anthropological research approach, the purpose of this research was to investigate maternal stress in the United States...
Humpback whales (Megaptera novaeangliae) are a widely distributed baleen whale species, well known for their diverse acoustic behavior. On high-latitude foraging grounds, humpback whales produce a suite of non-song vocalizations (“calls”) in concert with foraging and social behavior. In this dissertation I investigated the role of calls in the acoustic...
The objectives of this study were to isolate 2, 4-diaminobutyric
acid and to attempt cyclizing the acid and its disulfonamide derivative.
The original synthetic method by Adamson was followed but a
modified isolation procedure for the acid was employed.
Following the synthesis, the acidic solution was passed through
Dowex-3 ion-exchange...
The aromatic carbon structure is a defining property of chars and is often expressed with the help of two
concepts: (i) aromaticity and (ii) degree of aromatic condensation. The varying extent of these two features
is assumed to largely determine the relatively high persistence of charred material in the environment...
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., Hockaday, W. C., Keiluweit, M., Kleber, M.,
Masiello, C. A., ... & Schmidt, M. W. I. (2015). Aromaticity
This thesis will cover work that I have completed relating to the field of terahertz (THz) science. My work has consisted of generating tunable, narrowband THz pulses in a table-top optical setup and using both narrow- and broadband THz pulses to study various material systems. Broadband THz pulses were used...
Early seral forests regenerating from stand-replacing disturbances provide unique habitat for many species in productive, temperate forest landscapes and contribute to supporting biodiversity. Population declines in some species associated with early seral forests have prompted concerns about the conservation of these habitats, particularly the characteristic structural and compositional complexity associated...
The utility of high-throughput, computational screening has become an invaluable asset to the field of materials science. In the hierarchy of computational methods, the most accurate methods are often the most computationally expensive. However, as both the efficiency and fidelity of numerical techniques advance, high-quality screening of large materials datasets...
This ethnomusicological study has examined the forces that have globalized the Andean instrument of the quena and the genre of Andean music as a whole. This thesis specifically addresses the cultural, and socio-political factors over the last century that has led to the quena being circulated across the globe. Much...
In this work we consider a mathematical and computational model for biofilm growth and nutrient utilization. In particular, we are interested in a model appropriate at a scale of interface. The model is a system of two coupled nonlinear diffusion--reaction partial differential equations (PDEs). One of these PDEs is subject...
Skeletal muscle mitochondria are highly plastic organelles, integral to whole-body health. High-fat diet (HFD) and exercise remodel the skeletal muscle mitochondria. Whereby, altered skeletal muscle mitochondrial function is linked to decreased skeletal muscle insulin sensitivity which can be reversed by exercise. However, the mechanisms that contribute to skeletal muscle remodeling...
Understanding how wetland birds use habitat is pivotal to developing successful and
beneficial conservation strategies. Although it has been an ardent topic in forest
research for some time, how species interact with the spatial patterning of habitat
across a landscape (i.e., landscape structure) has been more or less neglected in...
Stephen Biko was a black leader in South Africa who
died in police custody on September 12, 1977. Biko's death
echoed within the Republic of South Africa and around the
world, showing that racial tensions in that country were
severe. At his death he was a hero to the black...
Nearly 75% of the stocks in the waters of the European Union are overused. Therefore, recovery programs
are both necessary and urgent. However, the decisions made by the fisheries ministers rather seem
to prolong the overuse situation instead of putting an end to it.
From an overall perspective, it would...
Several hypotheses about the relationships among individual tree growth, tree leaf area, and relative tree size or position were tested with red spruce (Picea rubens Sarg.) growing in uneven-aged, mixed-species forests of south-central Maine, U.S.A. Based on data from 65 sample trees, predictive models were developed to (i) estimate the...
Accumulating human impacts on freshwater ecosystems have created a biodiversity crisis for freshwater fishes while conservation efficacy remains hampered by the Linnaean shortfall, the ignorance of many species that have yet to be discovered and described. The past discovery of most freshwater fish species was simply a matter of collecting...
The distribution of American martens (Martes americana) within Sagehen Creek Experimental Forest (SCEF), Tahoe National Forest, California has been periodically documented from 1980–1993. This area has been the location of nine marten surveys, each involving a systematic detection/nondetection survey on the same grid. These data are an unprecedented time series...
The Second Pandemic had a profound impact on the people of Europe. In the few years between 1347 and 1350, a new epidemic disease spread across the entirety of Europe and killed between one third and two thirds of the population. While this initial wave was important, the real significance...
The public controversy over possible health hazards from radioactive fallout from atomic bomb testing began in 1954, shortly after a thermonuclear test by the United States spread fallout world wide. In the dissertation, I address two of the fundamental questions of the fallout controversy: Was there a threshold of radiation...
Enantioenriched sp³-hybridized carbenoid reagents CR1R2MX (X = nucleofuge, M = electrofuge) of different types were investigated for the synthesis of polysubstituted alkyl chains by iterative stereospecific reagent-controlled homologation (StReCH) and for the stereospecific connective synthesis of alkenes by eliminative cross-coupling.
In the first part, putative enantioenriched α-chloroalkyllithiums (CHRLiCl) were employed...
Novelist Toni Morrison is well-known for using the concept she calls rememory, or the process of actively revisiting and reconstructing a cultural past. Many critics agree that Morrison uses rememory in a strategic way, so that it provides
sturdy framework for a larger discussion of issues of race, class, and...
Nonalcoholic fatty liver disease (NAFLD) is characterized by the accumulation of excess neutral lipids within the parenchymal cells of the liver. The primary etiology is diet-induced and most often exists as a comorbidity with obesity, metabolic syndrome, and/or Type 2 Diabetes. The development of excess liver lipid can be self-limiting...
We present a method for decentralized, multi-robot exploration in adverse environments where communication is minimal. A key conceptual feature of our method is enabling implicit coordination between robots by training a Convolutional Neural Network (CNN) as a heuristic for planning using Monte Carlo Tree Search (MCTS). Our method consists of...
Eradication is often the preferred method of invasive species management on islands; however, its consequences may affect native communities. Feral goats (Capra hircus), donkeys (Equus asinus), and pigs (Sus scrofa) were eradicated from Santiago Island in the Galapagos Archipelago by 2005. Because feral goats were the dominant herbivores on Santiago...
The increasing human demands on natural resources, in combination with uncertainties about ecosystem dynamics due to global change, has led the scientific community to conclude that new approaches in understanding of ecological systems are needed to tackle environmental issues in an efficient manner. One development that has received more attention...
Low concentrations of hexachlorophene (HCP) inhibit a number of pyridine nucleotide-linked dehydrogenase enzymes. The I₅₀ HCP concentrations were 105 μM for pig heart isocitrate dehydrogenase (ICD), 65 μM for horse liver alcohol dehydrogenase, 39 μM for torula yeast glucose-6-phosphate dehydrogenase (G6PD), 6.0 μM for beef heart malate dehydrogenase, and 1.6...