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- Creator:
- Abberton, Michael, Batley, Jacqueline, Bentley, Alison, Bryant, John, Cai, Hongwei, Cockram, James, Costa de Oliveira, Antonio, Cseke, Leland J., Dempewolf, Hannes, De Pace, Ciro, Edwards, David, Gepts, Paul, Greenland, Andy, Hall, Anthony E., Henry, Robert, Hori, Kiyosumi, Howe, Glenn Thomas, Hughes, Stephen, Humphreys, Mike, Lightfoot, David, Marshall, Athole, Mayes, Sean, Nguyen, Henry T., Ogbonnaya, Francis C., Ortiz, Rodomiro, Paterson, Andrew H., Tuberosa, Roberto, Valliyodan, Babu, Varshney, Rajeev K., and Yano, Masahiro
- Abstract:
- Agriculture is now facing the ‘perfect storm’ of climate change, increasing costs of fertilizer and rising food demands from a larger and wealthier human population. These factors point to a global food deficit unless the efficiency and resilience of crop production is increased. The intensification of agriculture has focused on...
- Resource Type:
- Article
- Full Text:
- , James Cockram4, Antonio Costa de Oliveira8, Leland J. Cseke9, Hannes Dempewolf10, Ciro De Pace11, David
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- Creator:
- Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tanga, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, and Ware, Doreen
- Abstract:
- Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...
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- Article
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- Creator:
- Miadlikowska, Jolanta, Kauff, Frank, Högnabba, Filip, Oliver, Jeffrey C., Molnár, Katalin, Fraker, Emily, Gaya, Ester, Hafellner, Josef, Hofstetter, Valérie, Gueidan, Cécile, Otálora, Mónica A. G., Hodkinson, Brendan, Kukwa, Martin, Lücking, Robert, Björk, Curtis, Sipman, Harrie J. M., Burgaz, Ana R., Thell, Arne, Passo, Alfredo, Myllys, Leena, Goward, Trevor, Fernández-Brime, Samantha, Hestmark, Geir, Lendemer, James, Lumbsch, H. Thorsten, Schmull, Michaela, Schoch, Conrad L., Sérusiaux, Emmanuël, Arnold, A. Elizabeth, Maddison, David R., Lutzoni, François, and Stenroos, Soili
- Abstract:
- The Lecanoromycetes is the largest class of lichenized Fungi, and one of the most species-rich classes in the kingdom. Here we provide a multigene phylogenetic synthesis (using three ribosomal RNA-coding and two protein-coding genes) of the Lecanoromycetes based on 642 newly generated and 3329 publicly available sequences representing 1139 taxa,...
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- Article
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- Creator:
- Rick, Torben C., Sillett, T. Scott, Ghalambor, Cameron K., Hofman, Courtney A., Ralls, Katherine, Anderson, R. Scott, Boser, Christina L., Braje, Todd J., Cayan, Daniel R., Chesser, R. Terry, Collins, Paul W., Erlandson, Jon M., Faulkner, Kate R., Fleischer, Robert, Funk, W. Chris, Galipeau, Russell, Huston, Ann, King, Julie, Laughrin, Lyndal, Maldonado, Jesus, McEachern, Kathryn, Muhs, Daniel R., Newsome, Seth D., Reeder-Myers, Leslie, Still, Christopher, and Morrison, Scott A.
- Abstract:
- Historical ecology is becoming an important focus in conservation biology and offers a promising tool to help guide ecosystem management. Here, we integrate data from multiple disciplines to illuminate the past, present, and future of biodiversity on California’s Channel Islands, an archipelago that has undergone a wide range of land-use...
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- Article
- Full Text:
- , CHRISTINA L. BOSER, TODD J. BRAJE, DANIEL R. CAYAN, R. TERRY CHESSER, PAUL W. COLLINS, JON M. ERLANDSON
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- Creator:
- Wiemann, Philipp, Sieber, Christian M. K., von Bargen, Katharina W., Studt, Lena, Niehaus, Eva- Maria, Espino, Jose J., Huß, Kathleen, Michielse, Caroline B., Albermann, Sabine, Wagner, Dominik, Bergner, Sonja V., Connolly, Lanelle R., Fischer, Andreas, Reuter, Gunter, Kleigrewe, Karin, Bald, Till, Wingfield, Brenda D., Ophir, Ron, Freeman, Stanley, Hippler, Michael, Smith, Kristina M., Brown, Daren W., Proctor, Robert H., Munsterkotter, Martin, Freitag, Michael, Humpf, Hans-Ulrich, Guldener, Ulrich, and Tudzynski, Bettina
- Abstract:
- The fungus Fusarium fujikuroi causes "bakanae" disease of rice due to its ability to produce gibberellins (GAs), but it is also known for producing harmful mycotoxins. However, the genetic capacity for the whole arsenal of natural compounds and their role in the fungus' interaction with rice remained unknown. Here, we...
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- Article
- Full Text:
- , Eva- Maria Niehaus1, Jose J. Espino1, Kathleen Huß1, Caroline B. Michielse1, Sabine Albermann1
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- Creator:
- Jones, Julia A., Creed, Irena F., Hatcher, Kendra L., Warren, Robert J., Adams, Mary Beth, Benson, Melinda H., Boose, Emery, Brown, Warren A., Campbell, John L., Covich, Alan, Clow, David W., Dahm, Clifford N., Elder, Kelly, Ford, Chelcy R., Grimm, Nancy B., Henshaw, Donald L., Larson, Kelli L., Miles, Evan S., Miles, Kathleen M., Sebestyen, Stephen D., Spargo, Adam T., Stone, Asa B., Vose, James M., and Williams, Mark W.
- Abstract:
- Analyses of long-term records at 35 headwater basins in the United States and Canada indicate that climate change effects on streamflow are not as clear as might be expected, perhaps because of ecosystem processes and human influences. Evapotranspiration was higher than was predicted by temperature in water-surplus ecosystems and lower...
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- Article
- Full Text:
- Ecological Research Sites JULIA A. JONES, IRENA F. CREED, KENDRA L. HATCHER, ROBERT J. WARREN, MARY BETH
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- Creator:
- Stein, Ruediger, Kanamatsu, Toshiya, Alvarez-Zarikian, Carlos, Higgins, Sean M., Channell, Jim E. T., Aboud, Essam, Ohno, Masao, Acton, Gary D., Akimoto, Kazumi, Bailey, Ian, Bjorklund, Kjell R., Evans, Helen, Neilsen, Simmon H. H., Ferretti, Partizia, Gruetzner, Jean, Hagino, Kentaro, Harris, Robert N., Hatakeda, Kentaro, Hefter, Jens, Judge, Shelley A., Kullanek, Denise K., Nanayama, Futoshi, Rashid, Harunur, Sierro Sanchez, Francisco J., Voelker, Antje, and Zhai, Qiumin
- Abstract:
- In the North Atlantic, cold, relatively salty water sinks in the icy Labrador and Greenland seas, forming North Atlantic Deep Water (NADW). This circulates through the global ocean, driving ocean overturning and global heat transport and, thus, impacting global climate. As one of the most climatically sensitive regions on Earth,...
- Resource Type:
- Article
- Full Text:
- . FERRETTI, J. GRUETZNER, Y.J.B. GUYODO, K. HAGINO, R. HARRIS, K. HATAKEDA, J. HEFTER, S.A. JUDGE, D.K
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- Creator:
- Villeneuve, Daniel L., Curtis, Lawrence R., Jenkins, Jeffrey J., Warner, Kara E., Tilton, Fred A., Kent, Michael L., Watral, Virginia G., Cunningham, Michael E., Markle, Douglas F., Sethajintanin, Doolalai, Krissanakriangkrai, Oraphin, Johnson, Eugene R., Grove, Robert Allan, Anderson, Kim A., Oregon State University. Department of Microbiology, Oregon State University. Department of Environmental and Molecular Toxicology, Oregon State University. Department of Fisheries and Wildlife, and Institute for Natural Resources
- Abstract:
- The Willamette River, one of only 14 American Heritage Rivers, flows through the most densely populated and agriculturally productive region of Oregon. Previous biological monitoring of Willamette River fish detected elevated frequencies of skeletal deformities in fish from certain areas of the lower (NP [NP], rivermile [RM] 26-55) and middle...
- Resource Type:
- Technical Report
- Full Text:
- , USA By Daniel L. Villeneuve†¥, Lawrence R. Curtis†, Jeffrey J. Jenkins†, Kara E. Warner†, Fred
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- Creator:
- Adams, Paul D., Aertgeerts, Kathleen, Bauer, Cary, Bell, Jeffrey A., Berman, Helen M., Bhat, Talapady N., Blaney, Jeff M., Bolton, Evan, Bricogne, Gerard, Brown, David, Burley, Stephen K., Case, David A., Clark, Kirk L., Darden, Tom, Emsley, Paul, Feher, Victoria A., Feng, Zukang, Groom, Colin R., Harris, Seth F., Hendle, Jorg, Holder, Thomas, Joachimiak, Andrzej, Kleywegt, Gerard J., Krojer, Tobias, Marcotrigiano, Joseph, Mark, Alan E., Markley, John L., Miller, Matthew, Minor, Wladek, Montelione, Gaetano T., Murshudov, Garib, Nakagawa, Atsushi, Nakamura, Haruki, Nicholls, Anthony, Nicklaus, Marc, Nolte, Robert T., Padyana, Anil K., Peishoff, Catherine E., Pieniazek, Susan, Read, Randy J., Shao, Chenghua, Sheriff, Steven, Smart, Oliver, Soisson, Stephen, Spurlino, John, Stouch, Terry, Svobodova, Radka, Tempel, Wolfram, Terwilliger, Thomas C., Tronrud, Dale, Velankar, Sameer, Ward, Suzanna C., Warren, Gregory L., Westbrook, John D., Williams, Pamela, Yang, Huanwang, and Young, Jasmine
- Abstract:
- Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive,...
- Full Text:
- , Jorg Hendle, Thomas Holder, Andrzej Joachimiak, Gerard J. Kleywegt, Tobias Krojer, Joseph Marcotrigiano
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- Creator:
- Adams, Paul D., Aertgeerts, Kathleen, Bauer, Cary, Bell, Jeffrey A., Berman, Helen M., Bhat, Talapady N., Blaney, Jeff M., Bolton, Evan, Bricogne, Gerard, Brown, David, Burley, Stephen K., Case, David A., Clark, Kirk L., Darden, Tom, Emsley, Paul, Feher, Victoria A., Feng, Zukang, Groom, Colin R., Harris, Seth F., Hendle, Jorg, Holder, Thomas, Joachimiak, Andrzej, Kleywegt, Gerard J., Krojer, Tobias, Marcotrigiano, Joseph, Mark, Alan E., Markley, John L., Miller, Matthew, Minor, Wladek, Montelione, Gaetano T., Murshudov, Garib, Nakagawa, Atsushi, Nakamura, Haruki, Nicholls, Anthony, Nicklaus, Marc, Nolte, Robert T., Padyana, Anil K., Peishoff, Catherine E., Pieniazek, Susan, Read, Randy J., Shao, Chenghua, Sheriff, Steven, Smart, Oliver, Soisson, Stephen, Spurlino, John, Stouch, Terry, Svobodova, Radka, Tempel, Wolfram, Terwilliger, Thomas C., Tronrud, Dale, Velankar, Sameer, Ward, Suzanna C., Warren, Gregory L., Westbrook, John D., Williams, Pamela, Yang, Huanwang, and Young, Jasmine
- Abstract:
- Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive,...
- Full Text:
- . Harris,8 Jorg Hendle,19 Thomas Holder,4 Andrzej Joachimiak,20 Gerard J. Kleywegt,21 (Author list