The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
The Forest Service and the Bureau of Land Management propose to adopt coordinated ecosystem management direction for the lands they administer within the range of the northern spotted owl. This Supplemental Environmental Impact Statement (SETS) presents as alternatives the options, with slight modifications, developed by the Forest Ecosystem Management Assessment...
The goal of this project was to pave the way for more data-driven decision making when considering safety within Nuclear Engineering by proving the concept of new and innovative accident scenario modeling techniques for the analysis of the economics of nuclear safety margins. To do this, a simple, if extremely...
Within the past several years the technology of high-throughput sequencing has transformed the study of biology by offering unprecedented access to life's fundamental building block, DNA. With this transformation's potential a host of brand-new challenges have emerged, many of which lend themselves to being solved through computational methods. From de...
Discusses options for managing major insect pests and diseases of conifers in Oregon forests: bark beetles, wood borers, and ambrosia beetles; defoliators; aphids, adelgids, and scale insects; terminal and branch insects and pitch moths; root diseases; stem decays; foliage diseases; canker diseases and canker-causing rust diseases; and mistletoes. Extensive references...
Reinhabitation is an approach to building local cultures and economies within industrial society. The food system is a vital starting point. What are the principles of reinhabitory food systems? What are the possibilities for a locally adapted food system in the Marys River region of western Oregon? I describe past...
Fires affect animals mainly through effects on their habitat. Fires often cause short-term increases in wildlife foods that contribute to increases in populations of some animals. These increases are moderated by the animals’ ability to thrive in the altered, often simplified, structure of the postfire environment. The extent of fire...
Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...