In this dissertation I will demonstrate a novel application of self-exciting point process models to mass shooting data. I will also introduce two adaptations to the traditional nonparametric Hawkes process modeling framework. One such modification allows for the estimation of the additional productivity introduced by an event that is not...
Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W....
The purpose of this case study is to explore a mentoring program designed for African American male community college students at a Pacific Northwest community college. Community college practitioners can use the knowledge gained from this study as a best practice to increase the persistence and success of African American...
To become a competitor for fossil fuels such as coal, solar installations will need to be produced and installed at a price equal to or below grid parity. This price can be approached by either reducing the overall system cost or increasing system efficiency. The focus of this paper is...
Studies reporting on potentially toxic interactions between aqueous fullerene nanoparticles (nC₆₀) and
microorganisms have been contradictory. When known confounding factors were avoided, growth yields of
Saccharomyces cerevisiae and Escherichia coli cultured in the presence and absence of independently prepared
lots of underivatized nC₆₀ were found not to be significantly different.
Wildfire is an annual threat for many rural communities in the Pacific Northwest region of the United States. In some severe events, evacuation is one potential course of action to gain safety from an advancing wildfire. Since most evacuations occur in a personal vehicle along the surrounding road network, the...
The enhanced optical nonlinearity enabled by localized plasmonic fields has been well studied for all-optical switching processing (AOSP) devices for future optical communication systems. In this work, plasmonic photonic crystals with a nonlinear polycarbonate/polymethine blend cladding layer are designed to enhance the third harmonic generation (THG) at the telecom wavelengths...
This annotated bibliography was compiled to provide a comprehensive list of sources on the ecological factors that affect forest regeneration. Abstracts from 494 publications are indexed by author, species, and subject, and are arranged into 4 major sections. Topics include the effects of biotic factors, abiotic factors, and stand and...
Metal organic Frameworks (MOFs) that experience stimuli induced structural transformation could enable a whole new class of materials with remarkable properties. Photoactuating moieties in the structure could effect changes in the pore space or macroscale shape change enabling light driven gas separation and actuators. Here, we present a novel approach...
Our confidence in software systems depends on our confidence in the exhaustiveness of our testing. As software systems get more complex, the task of exhaustive testing becomes more complex and even infeasible in some cases. In order to build less error prone systems, we therefore need to not only focus...
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
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Aerts,2 Isabelle Benoit,8,9 AlexBoyd,6 Alexis Carlson,1 Alex Copeland,2
Pedro M. Coutinho,4 Ronald P
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
Full Text:
, Joseph W. Spatafora, Jagjit S. Yadav,
Andrea Aerts, Isabelle Benoit, AlexBoyd, Alexis Carlson, Alex
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
Rapamycin (Rapa) and dietary restriction (DR) have consistently
been shown to increase lifespan. To investigate whether Rapa
and DR affect similar pathways in mice, we compared the effects
of feeding mice ad libitum (AL), Rapa, DR, or a combination of
Rapa and DR (Rapa + DR) on the transcriptome and...
Full Text:
dietary restriction has a
larger effect on the transcriptome and metabolome of liver
Wilson C. Fok,1 Alex
Rapamycin was found to increase (11% to 16%) the lifespan of male and female C57BL/6J mice most likely by reducing the
increase in the hazard for mortality (i.e., the rate of aging) term in the Gompertz mortality analysis. To identify the pathways
that could be responsible for rapamycin’s longevity effect,...
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in the Liver
Transcriptome
Wilson C. Fok1, Yidong Chen3,4,5, Alex Bokov2,3, Yiqiang Zhang2,6, Adam B
This literature review completes the first of four research tasks that make up the
research project “Identification of Outer Continental Shelf Renewable Energy Space-
Use Conflicts and Analysis of Potential Mitigation Measures. The four tasks are:
• Access to and understanding of relevant literature. The foundation for the
development of...
Full Text:
Boyd,
James,
&
Banzhaf,
Spencer
(2007).
What
are
ecosystem
services:
The
Cultivated plants are often living artifacts that can aid in evaluation of historic or cultural landscapes. However, a working definition for “culturally significant plant” is currently lacking in the guidance literature for the cultural resource management practitioners. Based on a review of the literature on cultivated plants as indicators of...
Genome-enabled mycology is a rapidly expanding field that is characterized by the pervasive use of genome-scale data and associated computational tools in all aspects of fungal biology. Genome-enabled mycology is integrative and often requires teams of researchers with diverse skills in organismal mycology, bioinformatics and molecular biology. This issue of...
Published January 1947. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
This thesis explores some of the ethical issues pertaining to the use of so-called radical enhancement technology. Key concepts analyzed include “normal function”, “human being”, and “personhood.” I argue that the use of these key concepts in the debate thus far has lacked philosophical rigor, and that a reexamination of...
K-12 teacher retention is an enduring concern in the United States as teachers are vital for educational achievement and change. National trends demonstrate how widespread an issue teacher retention is, yet teacher labor markets remain highly localized and highlight the complexity of teacher retention decisions. We need an improved understanding...
This literature review completes the first of four research tasks that make up the
research project “Identification of Outer Continental Shelf Renewable Energy Space-
Use Conflicts and Analysis of Potential Mitigation Measures. The four tasks are:
• Access to and understanding of relevant literature. The foundation for the
development of...
The umbrella species concept is a single-species conservation strategy built on the notion that indirect protections are provided for multiple species that occupy the same area as a single, or umbrella, species. The utility of the umbrella species concept relies on similar associations of abundance, distribution, life history requirements, and...
A key constraint faced by consumers is achieving a positive energy balance in the face of temporal variation in foraging opportunities. Recent work has shown that spatial heterogeneity in resource phenology can buffer mobile consumers from this constraint by allowing them to track changes in resource availability across space. For...
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. We thank Mat Sorum, Caroline Cheung,
and volunteer field technicians Barbara Svoboda, Alex May
The present research sought to investigate the relationship between an individual's word choice and their social well-being. In the present investigation, social well-being is a person's social health in relation to their social environment, social network, and ability to interact with others in a social context. This thesis was based...
This thesis argues that the first two novels of Cormac McCarthy’s The Border Trilogy mark a sharp turn from the antihumanism of his earlier ‘Southern’ novels to a more affective exploration of posthumanist subjectivity within a world dominated by social discourse and metanarratives. In my examination of All the Pretty...
This thesis focuses on performances of masculinity by British Royal Flying Corps (RFC) airmen in the charged landscape of the First World War prisoner of war (POW) camp. I examine how captive airmen coped with imprisonment by reasserting the familiar homosocial communities of pre-capture squadron life, particularly through practices associated...
In this work, we study network coding technique, its relation to random matrices, and their applications to communication systems. The dissertation consists of three main contributions. First, we propose efficient algorithms for data synchronization via a broadcast channel using random network coding. Second, we study the resiliency of network coding...
Transmit beamforming is an important technique employed to improve efficiency and signal quality in wireless communication systems by steering signals towards their in- tended users. It often arises jointly with the antenna selection problem due to various reasons, such as limited number of radio frequency (RF) chains and energy/resource effi-...
Simultaneous translation, which translates concurrently with the source language speech, is widely used in many scenarios including multilateral organizations. However, it is well known to be one of the most challenging tasks for humans due to the simultaneous perception and production in two languages. On the other hand, simultaneous translation...
Floating guidance structures are intended to promote safe in-stream passage for juvenile salmon migrating downstream through reservoirs. However, the ability of an engineered structure to guide fish to safe passage has been primarily tested either after large-scale implementation in existing reservoirs or in laboratory studies and computer simulations without live...
Respiratory Syncytial Virus (RSV) is a leading cause of bronchopneumonia in infants and elderly. Knowledge of viral and host protein interactions is important for better understanding of the viral pathogenesis and may lead to development of novel therapeutic drugs. Here, we show that RSV Matrix (M) protein interacts with cellular...
This ethnographic study explores the social aspects of agricultural land-use in the Marys River region. The study seeks to understand how farmers define sustainability and how their views on agricultural issues help to define a sense of place and identity in the Marys River region, within the context of the...
Concrete has been categorized as a key contributor of CO2 (carbon) emissions into the atmosphere. This is mostly associated with the production of ordinary portland cement (OPC). The concrete and cement industries are pursuing a path to reduce their carbon emissions generally in accordance with the climate change goals outlined...
Bdellovibrio bacteriovorus is a small parasitic bacterium present
in soil, mud, and aquatic habitats. Due to its lysis of Gramnegative
bacteria, an important role in soil ecology has been suggested
for this organism. A study of effects of herbicides upon
Bdellovibrio might consequently be of considerable value.
In this study...
Transition matrix models are one of the most widely used tools for assessing population viability. The technique allows inclusion of environmental variability, thereby permitting estimation of probabilistic events, such as extinction. However, few studies use the technique to compare the effects of management treatments on population viability, and fewer still...
SAR11 is an ancient and diverse clade of heterotrophic bacteria that are abundant throughout the world's oceans, where they play a major role in the ocean carbon cycle. Correlations between the phylogenetic branching order and spatiotemporal patterns in cell distributions from planktonic ocean environments indicate that SAR11 has evolved into...
Year-round habitat use of marine predators provides knowledge of important marine areas throughout different life stages. Large-scale, environmental variability, both in space and time, causes changes in the behavior and distribution of marine predators that are important to quantify for conservation. In the Northern California Current System (NCCS), common murres...
Laboratory and modeling studies were performed with a mixed-anaerobic-culture obtained from the Evanite site in Corvallis, Oregon. The culture completely transforms trichloroethene (TCE) to cis-dichloroethene (c-DCE), vinyl chloride (VC), and finally to ethene. Acetylene inhibition studies were used to examine the culture's microbial activities. Kinetic studies determined the half-saturated constant...
We consider the problem of computing the cannonical polyadic decomposition (CPD) for large-scale dense tensors. This work is a combination of alternating least squares and fiber sampling. Data sparsity can be leveraged to handle large tensor CPD, but this route is not feasible for dense data. Inspired by stochastic optimization's...
Simultaneous speech translation (SimulST) is widely useful in many cross-lingual communication scenarios, including multinational conferences and international traveling. Since text-based simultaneous machine translation (SimulMT) has achieved great success in recent years. The conventional cascaded approach for SimulST uses a pipeline of streaming ASR followed by simultaneous MT but suffers from...
Monitoring marine ambient sound using standardized methods supports assessments of ocean sound levels across widespread ecosystems. This thesis quantifies differences among coastal and deep-water marine soundscapes in the Atlantic and Pacific oceans. The sources of sound in a soundscape are compartmentalized into three components and compared over time and among...
Located on the central Oregon coast, the Umpqua Eden site (35D083) yielded an artifact assemblage which is one of the five largest assemblages from the Oregon coast. The first aspect of the site that I looked at is the people who lived at the site, the ancestors of the Confederated...
Diversity literary awards and other sources were used to create a list of high-quality titles written by and about underrepresented groups. This list was used to assess the diversity and inclusiveness of the library collections of a land-grant university. Gaps in the collection and acquisition processes were identified and will...
Focus on Forestry is published by Oregon State University College of Forestry. Our goal is to keep Forestry alumni, friends, faculty, staff, and students informed about the College of Forestry and its many activities and programs.
Besides enabling an enhanced mobile broadband access, fifth-generation (5G) wireless mobile networks are envisioned to support the connectivity of massive, heterogeneous Internet of Things (IoT) devices. Connecting these devices through 5G systems and providing them with their needed data rates require huge amounts of spectrum and power resources, thus calling...
This dissertation focuses on the development of ultra-compact optical devices for free-space modulation. We propose a surface-normal modulator using metallic photonic crystals for free-space optical interconnects. The active control of light intensity is achieved by engineering the Fano resonances in metallic photonic crystals. Both thermo-optic modulation and electro-optic modulation of...
Machine learning systems are generally trained offline using ground truth data that has been labeled by experts. However, these batch training methods are not a good fit for many applications, especially in the cases where complete ground truth data is not available for offline training. In addition, batch methods do...
Measurements of a fresh surface anomaly (fresh lens) produced by rainfall during a westerly wind burst have been analyzed. The measurements were made in December 1992 as part of the Coupled Ocean–Atmosphere Response Experiment in the western equatorial Pacific (2°S, 156°E). Measurements included radar estimates of rainfall, upper-ocean temperature (T),...
Published September 1973. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
The ability to move towards favorable environmental conditions, called chemotaxis, is common among motile bacteria. In particular aerotaxis has been extensively studied in Escherichia coli. Three putative aer gene homologs were identified in the V. cholerae genome designated VCAer-1 (VC0512) VCAer-2 (VCA0658), and VCAer-3 (VCA0988). Deletion analyses indicated that only...
Oregon Biography Index is intended to serve primarily as a starting point in locating biographies of Oregonians. We have indexed 47 historical volumes which are either entirely devoted to biographies or have large self-contained biographical sections. The profiles in the books vary widely in accuracy and detail. Birth dates of...
A central challenge for ecology is to understand the dynamic nature of species interactions. A classic approach to community ecology assumes that individuals within a species are functionally identical and that consumer-resource dynamics can be predicted solely by using species abundances. However, one species can consist of multiple functional groups,...
Includes 1922 Summer School Graduates.
In the following pages the information, so far as it has been possible to obtain it, is given in the following order for each alumnus: Name, year in which the degree was conferred, degree, course, present occupation, and present mailing address.
Fungi in the genus Tolypocladium are diverse in their host associations, but the predominant ecologies include parasites of the ectomycorrhizal genus Elaphomyces and pathogens of insects. The aim of this dissertation research is to examine the evolution of these fungi and their host associations. To accomplish this several lines of...
Advances in mobile autonomous vehicles for oceanographic sensing provide new opportunities for passive acoustic monitoring of marine mammals. Acoustically equipped mobile autonomous platforms, including gliders, deep-water profiling floats, and drifting surface buoys can survey for a variety of marine mammal species over intermediate spatiotemporal scales. Additionally, such mobile platforms may...
In this thesis, we introduce a novel Explanation Neural Network (XNN) to explain the predictions made by a deep network. The XNN works by embedding a high-dimensional activation vector of a deep network layer non-linearly into a low-dimensional explanation space while retaining faithfulness i.e., the original deep learning predictions can...
The long-term goal of this research project is the development of solution-based inorganic dielectric and semiconductor materials for inkjet printed electronics. The main focus of this thesis involves testing of the materials and devices under development. A new solution-based inorganic dielectric material (HfOSO₄), given the name hafsox, is developed and...
Anthropogenic induced climate change is predicted to alter distribution of existing plant populations. As plants migrate over space and time, populations often fragment and contract, affecting basic elements of population dynamics (e.g., population size, gene flow, genetic diversity, etc.). Little is known, however, how these impacts on plant species will...
Purpose of the Study
The purpose of this study was to determine the exposure and
influence of recruitment techniques and influential sources and factors
which influenced student selection of vocational-technical education.
Procedures
The data for this study were obtained through the use of a student
questionnaire. The questionnaire was administered...
Laboratory scale microcosm studies were conducted using site specific groundwater and aquifer solids to assess the feasibility of stimulating indigenous microorganisms in-situ to biologically transform Trichloroethylene (TCE) and its lesser chlorinated daughter products dichloroethylene (DCE) and vinyl chloride (VC). Three different treatments were conducted to determine the best approach for...
A distributed system is a network of multiple autonomous computational nodes designed primarily for performance scalability and robustness. The performance of a distributed system depends critically on how tasks and resources are distributed among the nodes. Thus, a main thrust in distributed system research is to design schemes for distributing...
The Columbia River Gillnetter is the pilot of the Lower Columbia River commercial fishing industry, keeping fishermen and the public in touch with today's important issues.
Here the diversity and phylogeny of the genus, Sthereus Motschulsky, 1845, and its nearest associates in the large subfamily Molytinae are explored through molecular and morphological characters. Sanger sequencing of five genes determined that Sthereus is not monophyletic. Instead, the one species in the genus Gastrotaphrus Buchanan 1936, G. barberi...
This thesis will cover work that I have completed relating to the field of terahertz (THz) science. My work has consisted of generating tunable, narrowband THz pulses in a table-top optical setup and using both narrow- and broadband THz pulses to study various material systems. Broadband THz pulses were used...
Published January 1968. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
The ability of northern goshawks (Accipiter gentilis) to persist in intensively
managed and selectively harvested forest habitats is largely unknown. To address the
concern that populations of northern goshawks in eastern Oregon may be declining in
response to habitat alteration, I studied occupancy rates and habitat relationships of
nesting goshawks...
Ferrites have been used for various high frequency applications as bulk
materials. These applications, however, are limited to large dimension devices. In
this thesis, thin film ferrites were deposited from a low temperature solution-based
deposition process that is suitable for micro-scale high frequency applications. The
low temperature nature of this...
Machine learning models for natural language processing have traditionally relied on large numbers of discrete features, built up from atomic categories such as word forms and part-of-speech labels, which are considered completely distinct from each other. Recently however, the advent of dense feature representations coupled with deep learning techniques has...
Gall-associated phytopathogens have unique evolutionary histories that haveshaped both their modes of infection and genomic structures. Pathogenicity of the gall-associated plant pathogens of the Rhodococcus, Agrobacterium, and Rathayibactergenera is mediated by horizontally acquired virulence loci. The relative ease of gainand loss of the virulence loci has confounded accurate characterization of...