Whole ecosystem carbon dioxide (CO₂) exchange estimated with the eddy covariance (EC) technique has been central to studies on the responses of terrestrial ecosystems to disturbance and intra‐annual and interannual variations in climate, but challenges exist in understanding and reducing the uncertainty in estimates of net ecosystem exchange (NEE) of...
Water conservation and water quality are rapidly increasing in importance in all areas of the world. The ability to accurately measure soil water content and salinity, over a wide variety of conditions, is key to meeting this need. A set of forward prediction models and waveform interpretation algorithms to extract...
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Phytophthora infestans is a destructive plant pathogen best known
for causing the disease that triggered the Irish potato famine and
remains the most costly potato pathogen to manage worldwide.
Identification of P. infestan’s elusive center of origin is critical to
understanding the mechanisms of repeated global emergence of
this pathogen....
The Chloroflexi CL500-11 clade contributes a large proportion of the bacterial biomass in the oxygenated hypolimnia of deep lakes worldwide, including the world's largest freshwater system, the Laurentian Great Lakes. Traits that allow CL500-11 to thrive and its biogeochemical role in these environments are currently unknown. Here, we found that...
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EC
A. Aerobic phosphorylation
Ga0063436_12234 NADH-quinone oxidoreductase, B subunit 1.6.5.3
The ubiquity of high quality video and proliferation of mobile devices has contributed to an unprecedented rise in video consumption. HTTP, in conjunction with adaptive streaming, has become the de facto mechanism for delivering the vast majority of video as it readily caters to heterogeneous networks and devices. This dissertation...
A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
Most fish stocks worldwide are not optimally exploited and are therefore are producing less in biologic and economic terms that what it could be obtained. MSY objective for all the stocks by 2015 is put forward by several countries as management target to be achieved, while other countries such as...
Cryptococcus, a major cause of disseminated infections in immunocompromised patients, kills over 600,000 people per year
worldwide. Genes involved in the virulence of the meningitis-causing fungus are being characterized at an increasing rate, and to
date, at least 648 Cryptococcus gene names have been published. However, these data are scattered...
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), 878-883. doi:10.1128/EC.00083-14
10.1128/EC.00083-14
American Society for Microbiology
Version of
This report presents tables of suspended-sediment data collected from 1956 to 1967 at 10 sites in the Umpqua River basin. Computations based on these data indicate that average annual suspended-sediment yields at these sites range from 137 to 822 tons per square mile.
Because available data for the Umpqua River...
Western diets can influence behavior and gut microbiome due to the excessive intake of high fat and sucrose. Altering the microbiome can also influence the brain and behavior. The hypothesis that was tested was that diet-induced changes in the microbiome cause changes in cognitive abilities. A previous study showed learning...
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The increased severity of Clostridium difficile infection is primarily attributed to the appearance of an epidemic strain characterized as PCR ribotype 027. The only report that identified epidemic C. difficile ribotype 027 in an American country outside of North America comes from Costa Rica, raising the possibility that strains 027...
Reprinted January 1979. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the Sea Grant Catalog: http://seagrant.oregonstate.edu/publications
“Cloche” (pronounced klōsh) is French for a bell jar or dish that is set over delicate plants to protect them from cold weather. The definition has expanded to include many types of portable and permanent structures that shelter plants from wind and cold, serving as mini-green houses. They have become...
This booklet doesn’t start where you might think a typical guide should. We won’t ask how many lamps you have in your house, or what kind of vehicle you drive, or whether you use paper, plastic, or cloth bags at the grocery store. All that—and more—comes later in the series....
Ornithology is an exciting field with novel research emerging everyday. Researchers in bioacoustics often spend hours within the wilderness recording bird calls to analyze later in their lab. The burden of sifting through hours of audio recordings from the field continues to remain a time-consuming and manual task, despite the...
Abstract:
Resource managers and policy face challenges in forecasting the demand for natural resources replenishment (where possible) of natural resources due to changes in human lifestyle, population change and economic development. The year 2020 demonstrated this challenge on several fronts, including the realm of natural resources. Additionally, much competition for...
Accurately predicting key combustion phenomena in reactive-flow simulations, e.g., lean blow-out, extinction/ignition limits and pollutant formation, necessitates the use of detailed chemical kinetics. The large size and high levels of numerical stiffness typically present in chemical kinetic models relevant to transportation/power-generation applications make the efficient evaluation/factorization of the chemical kinetic...
Haiti has suffered great losses from deforestation, with little forest cover remaining today. Current reforestation efforts focus on seedling quantity rather than quality. This study examined limitations to the production of high-quality seedlings of the endemic Hispaniolan pine (Pinus occidentalis Swartz). Recognizing the importance of applying sustainable development principles to...
Implementation of a small-scale irrigation project in southern Mauritania is analyzed in
this report. The main objective is to demonstrate that small-scale irrigation farming is
the best suited solution for Mauritania's agriculture. To reach this objective different
steps are taken in this study. The first step highlights the different aspects...
Published June 1980. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
We have developed VitisCyc, a grapevine-specific metabolic pathway database that allows
researchers to (i) search and browse the database for its various components such as
metabolic pathways, reactions, compounds, genes and proteins, (ii) compare grapevine
metabolic networks with other publicly available plant metabolic networks, and (iii)
upload, visualize and analyze...
Yearly revisions of Total Allowable Catch under EU policies for the management of North Sea fisheries come at
high management costs and capital adjustment costs. It is unclear whether current EU fisheries policy strikes the
right balance between the need to regularly adjust fish quota to new information on one...
Published January 1973. A more recent revision exists. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Traditional approaches to streaming H.264 video over a network typically rely on a single method of transport (i.e., reliable or unreliable) and/or use static values for parameters that can have a significant negative impact on the perceptual quality of the received video. This dissertation presents a dynamic method for wireless...
Escalating demand for organic blueberries has driven a significant expansion of northern highbush blueberry (NHB; Vaccinium corymbosum L.) production area. This expansion is particularly pronounced in regions of the Pacific Northwest where native soil conditions are sub-optimal for NHB, notably east of the Cascade Mountain Range of Oregon and Washington,...
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Table 2.3: Average differences in soil leachate pH and electrical conductivity (EC) of
Urban agriculture (UA) is defined as the production of food crops or livestock within urban areas. Despite its popularity in the United States, research into UA systems suffers from a general underrepresentation of commercial urban systems. As a result, urban growers often have unique technological needs that are unmet by...
Infestations of container nursery beds by Phytophthora spp. can be persistent and costly. One method of disinfestation that does not require the use of chemicals is soil solarization, which captures energy from the sun to heat soil and thermally inactivate target pathogens. In laboratory temperature gradient experiments, I investigated the...
Long field-life systems are those for which operational, as opposed to capital, expenditures dominate the life time cost of the system. In established product categories, operational experience and historical maintenance data allows engineers to make informed decisions influencing maintenance during the early design stages when design changes are at their...
We analyzed 7 years (2002–2008) of micrometeorological and concurrent biological
observations of carbon and water fluxes at a mature ponderosa pine forest in central
Oregon in a semiarid climate. We sought to evaluate the extent that gross primary
productivity, net ecosystem exchange, ecosystem respiration, net primary productivity, net
ecosystem productivity,...
Biological invasion potential can be strongly influenced by abiotic factors such as temperature, water availability, and solar radiation. Invasive species that possess phenotypically plastic traits can mediate impacts from these stressors, but may be unable to recognize and respond to dangerous levels in a novel environment. Understanding potential constraints on...
Transportation systems need to get better by moving ever more people while consuming ever fewer resources. To build better transportation systems, planners need an accurate understanding of how people exercise mobility and tools to apply that understanding to the transportation system. Such an understanding can come through the development of...
Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental...
Phylogenetic relationships of the Antiperyphanes Complex of the genus Bembidion are inferred using DNA
sequences from seven genes (two nuclear ribosomal, four nuclear protein coding, and one mitochondrial
protein coding). Redefined subgenera within the complex are each well-supported as monophyletic. Most
striking was the discovery that a small set of...
Published January 1995. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Chronic nitrogen (N) fertilization can greatly affect soil carbon (C) sequestration by altering biochemical interactions between plant detritus and soil microbes. In lignin-rich forest soils, chronic N additions tend to increase soil C content partly by decreasing the activity of lignin-degrading enzymes. In cellulose-rich grassland soils it is not clear...
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field (after 19 years of chronic nutrient additions) and their
substrate
Enzyme EC Substrate Final
Surface transient storage (STS) has functional significance in stream ecosystems because it increases solute interaction with sediments. After volume, mean residence time is the most important metric of STS, but it is unclear how this can be measured accurately or related to other timescales and field-measureable parameters. We studied mean...
Lifestyle factors are responsible for a considerable portion of cancer incidence worldwide, but credible estimates from the World Health Organization and the International Agency for Research on Cancer (IARC) suggest that the fraction of cancers attributable to toxic environmental exposures is between 7% and 19%. To explore the hypothesis that...
The eddy-covariance method often underestimates fluxes under stable, low-wind conditions at night when turbulence is not well developed. The most common approach to resolve the problem of nighttime flux underestimation is to identify and remove the deficit periods using friction-velocity (u*) threshold filters (u*[superscript Th]). This study modifies an accepted...
Pseudomonas is a diverse, ubiquitous, and widely studied genus of bacteria. As Pseudomonas species occupy a wide range of niches in the ecosystem, they have made remarkable biological impacts. Better understanding of Pseudomonas biology, genetic diversity, and functional interactions with other organisms and the environment will provide valuable insights into...
Nalidixic acid and its derivatives act through inhibition of
bacterial DNA gyrase activity. Recently there have been a series of
papers reporting the antibacterial activity against three different
types of bacteria (S. aureus, E. coli and P. aeruginosa) by a series
of 1,4-dihydro-4-oxoquinoline (or 1,8-naphthyridine) 3-carboxylic
acids. Consistent biological data...
Lobster (Homarus americanus) ranks first in Canada’s fisheries, but Quebec lobster represents only 6% of eastern Canada landings. During the peak of the fishing season in Quebec as elsewhere, supply is at its maximum and price is the lowest. For this reason, there has been considerable interest in Quebec in...
Despite years of research, females continue to have a higher incidence of non-contact ACL injuries. One of the major findings of this research is that males and females perform certain tasks, such as, cutting, landing, and single-leg squatting, differently. In particular, females tend to move the knee into a more...
Objectives: Parental pediatric vaccine decisions are influenced by parents' health provider networks. Complementary and alternative medical providers may be key influences in the networks of those parents who do not vaccinate their children. Methods: From March to July 2013, we conducted semi-structured interviews of Oregon complementary and alternative medical providers...
FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition...
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of metabolites. The enzymes with
Enzyme Commission (EC) number and associated coding genes
are
Ascorbic acid, or vitamin C, is well known as a co-factor for proline-hydroxylase and as an anti-oxidant. However, it is also capable of forming covalent bonds, particularly in the role of a nucleophile, henceforth termed 'ascorbylation'.
The ascorbylation of electrophiles can occur under physiological conditions. Furthermore, there are a number...
Accurately estimating evapotranspiration (ET) at large spatial scales is essential to our understanding of land-atmosphere coupling and the surface balance of water and energy. Comparisons between remote sensing-based ET models are difficult due to diversity in model formulation, parametrization and data requirements. The constituent components of ET have been shown...
Several lower tolerance limit procedures are compared with regard
to efficiency and robustness. The procedures include the nonparametric
based on a single order statistic and the maximum likelihood
estimates for complete and censored samples from parametric families
of distributions. Right-censoring is considered as an approach for
improving the robustness of...
The Lean process improvement philosophy has been proposed as a method for improving components of Higher Education (HE), including student learning outcomes; however, current lean applications to HE have focused on administrative operations or general institutional interventions. Comparatively little work has been performed applying lean to teaching. This work fills...
Seeds are an essential component of plant life histories, and seed endophytes have the potential to influence germination, seedling establishment and development. That said, seed endophytes are a relatively new area of study, both in the factors that influence which taxa are present and how these microbes alter plant function....
Apart from the traditional role of preventing progression from HIV to AIDS, antiretroviral drug therapy (ART) has an additional benefit of substantially reducing infectiousness, making them potentially an important strategy in the fight against HIV. Recent advances in drug therapy have also seen the use of antiretroviral drugs as a...
The seafood industry has a problem of underutilization of harvested and processed fish. Up to 60% of the weight of the fish is considered a byproduct that is typically made into fishmeal for livestock and aquaculture feed, a low-value and non-food grade product. Two species that make up major fisheries...
This thesis details my investigation of some pharmaceuticals and natural products on the transport of drugs which are substrates of P-glycoprotein (P-gp), such as cyclosporin A (CSA) and digoxin by using Caco-2 and MDCKII-MDR1 drug transport models. Three objectives were performed to address this goal. The first objective was to...
Western diets can influence behavior and gut microbiome due to the excessive intake of high fat and sucrose. Altering the microbiome can also influence the brain and behavior. The hypothesis that was tested was that diet-induced changes in the microbiome cause changes in cognitive abilities. A previous study showed learning...
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Wireless High Definition Video Transmission (WHDVT) over 802.11-based networks enjoys widespread deployment among today's multimedia solutions. Examples include Intel® Wireless Display and Apple Airplay®, to name a few. In these systems, peer-to-peer networks are established over which H.264-encoded video is transported wirelessly to be decoded and played back at the...
Revised November 1994. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Users curate music playlists based on emotion to focus or relax, so streaming services often create playlists of songs to aid this process. Prior research focuses on generating playlists of a single mood or genre, although a few studies work to construct automatic playlists that transition between the genres of...
Provides information on private Chinook, chum and coho salmon hatcheries in Oregon. Includes statistics and a map showing hatchery locations. Mentions the end of Oregon State University's involvement with the Whiskey Creek hatchery in Netarts Bay. "This report provides information on recent developments, progress in 1981, with summaries of production...
Flexible aerodynamic surfaces have been shown to favorably influence flight characteristics at low Reynolds numbers by increasing lift, angle of attack at stall, and resistance to perturbation. The objective of the research presented within this thesis is to investigate the influence of two aspects of flight observed in biological flyers,...
Reef building corals are the foundation of an entire ecosystem, but they are threatened primarily by rising ocean temperatures due to climate change. Corals depend on a thermally sensitive symbiosis with intracellular dinoflagellates. As oceans warm, this symbiosis is disrupted and results in coral mortality, declining populations and degraded reefs....
This report summarizes the results of our bay clam studies in 1984. Activities summarized include monitoring of the recreational and commercial clam fisheries, hatchery stock enhancement studies, natural recruitment studies, and miscellaneous other projects.
Published December 1980. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Hydrological and biogeochemical processes occurring throughout a watershed are typically reflected in stream water chemistry, including in coastal watersheds. While Oregon Coast Range streams have been studied in the past, there is a dearth of knowledge in terms of seasonal temporal trends and spatial variability that this study seeks to...
Variable area surveys are used in large geographic regions to estimate the density of birds distributed over a region. If some birds go undetected, a measure of the effective area surveyed, the amount of area occupied by the birds detected, is needed. The effective area surveyed is determined by observational,...
We compiled a lake-water clarity database using publically available, citizen volunteer observations made between 1938 and 2012 across eight states in the Upper Midwest, USA. Our objectives were to determine (1) whether temporal trends in lake-water clarity existed across this large geographic area and (2) whether trends were related to...
Published September 1979. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Gravity measurement program in Oregon / John V. Thiruvathukal and Joseph W. Berg, Jr. -- The principle of discovery and the problems arising therefrom / Raymond B. Holbrook.
Large amount of organic carbon is stored in high latitude soils. A substantial proportion of this carbon stock is vulnerable and may decompose rapidly due to temperature increases that are already greater than the global average. It is therefore crucial to quantify and understand carbon exchange between the atmosphere and...
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-Covariance (EC)-tower based CO2 measurements in the birch
forest revealed very variable C sink/source
Superwarfarins are anticoagulant rodenticides that are 100 times more potent and 15 times more persistent than warfarin. They have been used since the 1980s and cause over 10,000 cases of accidental and intentional poisonings per year. Apart from inducing uncontrollable bleeding, by inhibiting the vitamin K cycle, superwarfarins can disrupt...
Mullite-zirconia composites have been slated for use in a novel miniature ceramic turbine engine components developed for unmanned air vehicle (UAV) engine applications. Economically feasible production of these complex components requires the use of a near-net shape process such as powder injection molding (PIM). This thesis explores the development and...
In the Columbia Basin, pre-plant soil fumigation is commonly used in potato production for pest control, but fumigation can kill non-target organisms within the soil, result in unintended shifts in the microbial community, and disrupt long-term soil health. Cover crops have been shown to strongly influence the numbers and communities...
Dramatic declines of the native northeast Pacific mud shrimp, Upogebia pugettensis over the last three decades have occurred in response to intense infestations by the Asian bopyrid isopod parasite, Orthione griffenis, that was introduced in the 1980s. We report herein the arrival of the Asian mud shrimp, Upogebia major, in...
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
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://www.expasy.org/sprot/), KEGG (20), and KOG (21). KEGG hits were used to assign EC
numbers (http://www.expasy.org
Monitoring marine ambient sound using standardized methods supports assessments of ocean sound levels across widespread ecosystems. This thesis quantifies differences among coastal and deep-water marine soundscapes in the Atlantic and Pacific oceans. The sources of sound in a soundscape are compartmentalized into three components and compared over time and among...
Some evidence suggests a connection between outdoor recreation participation and
stronger environmental worldviews. This study finds little evidence supporting
participation in outdoor recreation activities and stronger environmental worldviews and
some evidence supporting a weak connection between appreciative outdoor recreation
and stronger environmental worldviews. Additionally, the study documents greater
participation in...
The lag phase, the specific growth rate, the minimum a [subscript w]
required for growth and the temperature characteristic of
Fsendomonas fluorescens, Brochothrix thermosphacta, Salmonella
typhlmurium, Streptococcus faecalis and, Staphylococcus aureus
have been studied in liquid model media under controlled temperature
and a [subscript w] conditions. The results show that...
One of the important ‘hallmarks’ of cancer is angiogenesis, which is the process of formation of new blood vessels that are necessary for tumor expansion, invasion and metastasis. Under normal physiological conditions, angiogenesis is well balanced and controlled by endogenous proangiogenic factors and antiangiogenic factors. However, factors produced by cancer...
Crops were grown at the experimental farms using accepted cultural practices (within the limits of experimentation) or trials were conducted on growers' fields. Most experiments were designed as randomized complete blocks with three to five replications. Herbicide treatments were applied uniformly with CO₂ precision plot sprayers. Unless otherwise indicated, preplant...
Myxozoans are microscopic parasites, related to corals and jellyfish. Most Myxozoa probably have two-host lifecycles that require a vertebrate (typically fish) and invertebrate (annelid or bryozoan). However no life cycle is known from the Sphaerospora lineage.
I hypothesized that the life cycle of Sphaerospora elegans, a myxozoan parasite of three-spined...