Lactic acid bacteria (LAB) play a significant role in the production of several food products for human consumption. Humans exploit and maximize the various benefits from LAB characteristics, especially in foods such as cheese, yogurt and other fermented products. More recently, research discovered that certain LAB, such as Lactococcus species,...
Full Text:
Production in Lactococcus Roberto A. Garcia III Mentor: Dr. Janine Trempy Oregon State University;Department
Lactic acid bacteria (LAB) play a significant role in the production of several food products for human consumption. Humans exploit and maximize the various benefits from LAB characteristics, especially in foods such as cheese, yogurt and other fermented products. More recently, research discovered that certain LAB, such as Lactococcus species,...
Full Text:
Lactococcus
Roberto A. Garcia III Mentor: Dr. Janine Trempy
Oregon State University; Department of
Lactic acid bacteria (LAB) play a significant role in the production of several food products for human consumption. Humans exploit and maximize the various benefits from LAB characteristics, especially in foods such as cheese, yogurt and other fermented products. More recently, research discovered that certain LAB, such as Lactococcus species,...
Lactic Acid Bacteria (LAB), an important group of organisms in modern food production, are known to secrete a unique compound called exopolysaccharide (EPS). EPS is economically important because it enhances functional properties in food and may confer beneficial health effects to consumers. Novel strains of Lactococcus lactis, Streptococcus thermophilus, and...
Through passive adaptation to incidental flow, flexible aerodynamic surfaces exploit effects of increased lift, delayed stall and disturbance rejection. Wings of birds, bats, and insects exhibit these passive effects, and at the same time through the use of structural state feedback sensed from the loads on the wing, active control...
The purpose of this qualitative study was to research the experience of six Hispanic students who were interviewed in depth regarding their persistence in school and success at a community college. The students reported on their educational experiences prior to college and how that related to attendance at the college;...
Frost injury is one of the major factors limiting potato production in many parts
of the world. It would be desirable to transfer the frost-tolerance traits from the hardy
relatives to the cultivated potato, however, progress has been very slow. Since Solanum
commersonii has been the major source of frost...
We present student perceptions of a new first-year engineering programming class that was designed by informed research practices. While the College of Engineering at Oregon State University saw a lot of major switching in the first year, there were not many students switching into computer science (CS). This could have...
Today nano scale materials are being used for wide range of applications. One promising topic in nano scale materials is using them for reinforcement of different polymeric materials to reach desirable stiffness properties. The stiffness of these materials is mostly found experimentally because the nanocomposite community lacks a decent analytical...
Multiobjective decision analysis (MDA) is a useful assessment method when fishery managers need a systematic investigation of the trade-offs involved in the selection of alternative policy options. An important class of techniques within MDA is vector optimization, consisting of mathematical programming models with vector valued objective functions. From the management...
Propose a sampling plan to determine Hg contamination in the Nanay river basin.
The sampling plan is for a feasibility pilot, to investigate whether it is possible to safely collect samples for Hg analyses. Future studies will build on these initial results.
Coverage algorithms for deployment of WiFO - a hybrid femtocell architecture based on WiFi and Free Space Optical (FSO) technologies are studied to significantly increase wireless throughput of existing WiFi networks. In contrast with existing WiFi networks, WiFO incorporates small cell size, line of sight transmissions, and the Gaussian attenuation...
For the last 30 years, the population of Mexico has grappled with overweight, obesity, and associated chronic diseases, such as type-2 diabetes and hypertension. To standardize care among healthcare providers and dietitians, an official nutritional guideline was published in the early 2000s, which included a non-modifiable food-based dietary guideline in...
The US Department of Agriculture, Agricultural Research Service, National Clonal Germplasm Repository in Corvallis, Oregon, preserves more than 800 accessions of hazelnut (Corylus), including C. avellana cultivars and representatives of 10 other recognized shrub and tree species. Characterization and study of genetic diversity in this collection require cross-transferable markers, such...
Engineers have long been inspired by nature's flyers. Such animals navigate complex environments gracefully and efficiently by using a variety of evolutionary adaptations for high-performance flight. Biologists have discovered a variety of sensory adaptations that provide flow state feedback and allow flying animals to feel their way through flight. A...
The Global Earthquake Model (GEM) aims to develop uniform, openly available, standards, datasets and tools for worldwide seismic risk assessment through global collaboration, transparent communication and adapting state-of-the-art science. GEM Faulted Earth (GFE) is one of GEM’s global hazard module projects. This paper describes GFE’s development of a modern neotectonic...
Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen
concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global
assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
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Chen1, Mark Collier8, Roberto Danovaro9, Andrew J. Gooday6, Benjamin M. Grupe10,
Paul R. Halloran11,12
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
As early as 1491 in an Act of Parliament during the reign of Henry VII of England, overfishing and
the capture of juveniles were recognized as root causes of declining fish catches, and since then,
minimum capture sizes, closed seasons and areas, and gear restrictions have been implemented to
address...
The Conference Program for IIFET, held July 10-14 in Corvallis, Oregon. Program lists the sessions by date and time and includes the session titles, speakers and paper titles.
During the Colonial Period, in Mexico there was no rational
forest development policy and, as a result, forest resources were
squandered and to a considerable extent destroyed. During the
Nineteenth Century, a rational forest policy began to be promoted, but
in the end, it was translated into a policy of...
Building institutional and human capacity for integrated coastal zone management (ICZM) is
increasingly recognized as critical to the future of sustainable development in coastal states.
Agenda 21 of the UNCED conference has underscored the urgency of capacity building for
ICZM as have other international bodies such as the North American...
Background: Although some previous research has found ways to find inclusivity bugs (biases in software that introduce inequities among cognitively diverse individuals), little attention has been paid to how to go about fixing such bugs. We hypothesized that Information Architecture (IA)--the way information is organized, structured and labeled--may provide the...
The human senses can be used as analytical tools to evaluate many different aspects of our daily lives. The use of our senses through organoleptic methods offers unique and powerful insights into the characteristics of different stimuli. Due to the unique function of the different sensory organs we use to...
This study examined water scarcity and vulnerability in Quintana Roo, along the northern Caribbean coast of Mexico where rapid growth of tourism in the past 40 years has limited the ability of rural and urban communities to obtain safe, reliable, and equitable access to water services and critical water infrastructure...
Brewers' spent grain (BSG), the byproduct from beermaking, is a good source of protein and dietary fiber and may be utilized as a functional ingredient for food applications such as bakery goods. Starch-based film is well-known for its safety, edibility, and renewability. Starch films with the incorporation of cellulose nanofiber...
Recognizing human actions in videos is a long-standing problem in computer vision with a wide range of applications including video surveillance, content retrieval, and sports analysis. This thesis focuses on addressing efficiency and robustness of video classification in unconstrained real-world settings. The thesis work can be broadly divided into four...
This dissertation has focused on lignin byproducts that result from the alkali processing of wheat straw. The first study evaluated the application of “standard” lignin quantification methods for summative analyses of alkali-based processes. Mass closure during NaOH processing at 25, 50, and 75°C of wheat straw was evaluated using the...
Bacterial contamination of food poses a great risk to human health worldwide. A
chromatophore cell-based biosensor, utilizing B. splendens erythrophore cells, is an
emerging technology that has shown potential to detect bacterial toxicity based on
function-dependent mechanisms. Previous studies have investigated the response of
erythrophore cells to foodborne pathogens, pesticides,...
Searching for suitable measures to solve internal economic problems and
promote economic development, many third world countries have switched from
competitive to government-controlled trade of their agricultural staples. Such
government intervention has failed in many LDCs and researchers have
formulated models and made suggestions to alleviate the resulting distortions.
Modelling...
This project discusses the topic of personal names and the cultures of different
peoples and their particularities, specifically in Vietnam and Denmark. The first part of
this paper gives a brief history of naming traditions (mostly relating to Western European
traditions). The second part of the paper compares two families...
In 2008, the US Department of Energy’s (DOE) Wind and Water Power Program issued a funding opportunity announcement to establish university-‐led National Marine Renewable Energy Centers. Oregon State University and the University of Washington combined their capabilities in wave and tidal energy to establish the Northwest National Marine Renewable Energy...
There is an ever growing number of Latinas/os who reside and have settled permanently in rural America. Unbeknownst to most, rural Latinas/os face adversities unfamiliar to those living outside of this scope. As it stands, the barriers urban Latinas/os students face when transitioning to college has been well documented. However,...
As modern systems continue to increase in size and complexity, they pose significant safety and risk management challenges. System engineers and much of the government research efforts are focused on understanding the attributes and characteristics that emerge from the interactions of components and subsystems. As a result, the objective of...
Intensifications in seasonal temperature variation, attributed to increased greenhouse gas concentrations, are having an adverse effect on the forest composition of the northeastern United States. New York’s temperate broadleaf forests are undergoing alterations including a decline of the native sugar maple (Acer saccharum), as the species’ population begins to decrease...
When contributing to a software system, developers need to understand the rationale for previous design decisions so that they can adhere to the system’s design. Not doing so can lead to erosion of the overall design quality of the system. However, discussions embedded in a large volume of communication on...
Current protein immobilization techniques lack defined control over protein orientation. Protein orientation is important for making biosensors and biomaterials that are sensitive and efficient and can be crucial for designing some devices such as immunosensors or direct electron transferring biocells. A new method of protein immobilization is proposed that takes...
Some authors defending the "hereditarian" hypothesis with respect to differences in average IQ scores between populations have argued that the sorts of environmental variation hypothesized by some researchers rejecting the hereditarian position should leave discoverable statistical traces, namely changes in the overall variance of scores or in variance-covariance relating scores...
Conventional wastewater treatment facilities using activated sludge, secondary clarifiers, and chlorine disinfection comprise a large portion of urban wastewater treatment practices in the United States. While highly adept at removing chemical, physical, and numerous biological contaminants, these treatment methods are ineffective at removing contaminants of emerging concern, such as antibiotics...
Detection of both biological and chemical environmental toxicants is essential in the assessment of risk to human health. Cell-based biosensors are capable of activity- based detection of toxicity. Chromatophore cells, responsible for the pigmentation of poikilothermic animal, have shown immense potential as cell-based biosensors in the detection of a broad...
Social and human services employees are on the forefront of social justice issues in the United States through their direct work with a wide array of oppressed and vulnerable people. As a field, these workers are proximal to people most acutely impacted by injustices. In Oregon, the principal agency for...
The Goose Lake Basin, situated on the border of Oregon and California, USA, faces significant challenges from drought, wildfire, and other environmental stressors. This region hosts numerous endemic fish species such as the Goose Lake redband trout (Oncorhynchus mykiss newberri), Goose Lake lamprey (Entosphenus sp.), Goose Lake tui chub (Siphateles...
Diversity literary awards and other sources were used to create a list of high-quality titles written by and about underrepresented groups. This list was used to assess the diversity and inclusiveness of the library collections of a land-grant university. Gaps in the collection and acquisition processes were identified and will...
Anthropogenic land-cover change and climate change are the major drivers of the steep loss of avian biodiversity in past decades. Loss of avian biodiversity is predicted to result in the reduction of ecosystem services and ecological functions. Identifying avian population changes and the drivers of these trajectories is essential for...
Increased sales of surimi seafood, with the majority as crabstick in the United States indicates that surimi based products are becoming more popular. With growing popularity, there is increased competition for market share. Under these circumstances, some companies may be willing to sacrifice product quality in order to facilitate manufacture...
Transportation systems are facing safety and operational challenges with a cost of billions of dollars annually in lost production time and wasted fuel. Infrastructure expansion, previously held as a panacea to most transportation challenges has lost its appeal due to financial, land-use and environmental constraints. Interest is surging in intelligent...
Offshore wind and wave energy have the potential to be significant sources of future global electricity production, reduce carbon emissions, decrease dependence on energy importation, and stimulate economic growth in coastal and remote areas. Fixed-foundation and floating offshore wind and wave energy technologies are at different stages of development, but...
The dissertation focuses on the engineering of light-matter interaction using plasmonic nanoparticles and metamaterials to achieve enhanced luminescence and based on which to improve the performance of biosensing and light-emitting technologies. We designed and fabricated a spectrum of nanostructures to exhibit particular dispersion relations capable of controlling the spontaneous emission...
Methods for obtaining accurate, spatially explicit estimates of biomass density in tropical forests are required to reduce uncertainties in the global carbon cycle, and to support international climate agreements and emerging carbon markets. Three-dimensional (3-D) remote sensing techniques sensitive to the vertical structure of vegetation provide a unique opportunity for...
The distribution of anthocyanin pigments and polyphenolics of sweet (Prunus avium) and sour cherries (Prunus cerasus) were determined by Ultraviolet- Visible (UV-Visible) spectrophotometry and High Performance Liquid Chromatography with photodiode array detector (HPLC-DAD). Their antioxidant properties were determined by Oxygen Radical Absorbance Capacity (ORAC) and Ferric Reducing Antioxidant Power (FRAP)....
Since the 1952 Bolivian agrarian reform, farmer unions have sought to establish themselves as producers for regional markets. Development strategies led by the World Bank and IMF have largely jeopardized small farmers, and challenged farmers to meet market demands. At present, a new agrarian revolution is being implemented and is...
Alcohol is a widely consumed, nonessential, bioactive nutrient with end-organ effects on the skeleton. Moderate levels of alcohol consumption are generally associated with increased bone mineral density (BMD), whereas higher intake levels result in reduced bone formation, bone loss, and increased risk for osteoporotic fracture. Given the negative impact of...
The yeast Brettanomyces bruxellensis is the most important wines spoilage yeast encountered during winemaking as it can survive in wine for long periods, requires minimal nutrients for growth, and can be difficult to control. Brettanomyces produces two major spoilage products, the volatile phenols 4-ethylphenol (Band-Aid, medicinal smell) and 4-ethylguaiacol (smoke,...
Peptide-phosphorodiamidate morpholino oligomers (PPMOs) are synthetic DNA mimics that bind and silence gene targets. Through designing PPMOs that silence essential or resistance genes in pathogens, these antisense oligomers could be utilized as novel antimicrobials. Towards this end, my thesis employed minimum inhibitory concentration assays (MICs) to identify PPMOs capable of...
Exploration and production of oil in the Gulf of Mexico has seen an astonishing increase since the first well was drilled in 1936. Much of the current exploration is occurring in waters greater than 5000 feet. The largest and most unprecedented oil spill in the United States occurred on April...
Software systems are becoming an essential part of the lives of both individuals and organizations, and as a consequence, these systems are getting bigger and more complex. Because of this, the tasks of maintaining the quality in these complex software systems are becoming increasingly difficult. Furthermore, these systems are subject...
Anthropogenic induced climate change is predicted to alter distribution of existing plant populations. As plants migrate over space and time, populations often fragment and contract, affecting basic elements of population dynamics (e.g., population size, gene flow, genetic diversity, etc.). Little is known, however, how these impacts on plant species will...
In this thesis, we introduce a novel Explanation Neural Network (XNN) to explain the predictions made by a deep network. The XNN works by embedding a high-dimensional activation vector of a deep network layer non-linearly into a low-dimensional explanation space while retaining faithfulness i.e., the original deep learning predictions can...
This study helps to answer the broader question of why Latino students
across the U.S. persistently drop out of school at the highest rates compared to
students of other racial groups by focusing on the institutional workings of the
various levels of the Oregon school system. Latino students have the...
Transport phenomena specially the ones that occur in the various engineering disciplines such as tissue engineering and natural environment are often complex to analyze mostly due to the dynamic and geometric complexities; as such, they have been the subject of an active and intense area of research in past decades....
This research project is an historical case study of the conflict
which evolved from the deliberations and subsequent implementation
of bilingual education in Central School District 13J, Independence,
Oregon. The time period under consideration spans 35 months,
beginning in August 1974, when district officials first proposed bilingual
education, and ending...
1S801 is a transposable element isolated from Pseudomonas syringae pathovar
(pv.) phaseolicola, the causal agent of halo blight of bean. Fragments of the element are
present in multiple copies on an indigenous plasmid, pMMC7105, of strain LR781, and
have been implicated as sites of homologous recombination leading to imprecise
excision...
Researchers rely on bioeconomic models to guide research and generate fishery management advice for commercial fisheries. Due partly to a paradigm shift towards ecosystem based fishery management, increasing complexity in the characteristics of the problems has meant that bioeconomic simulation models are becoming more prevalent in the fisheries literature. However...
Rhizopogon is a large genus of ectomycorrhizal (EM) fungi that grows in association with host trees of the family Pinaceae. We have conducted a series of studies investigating the ecology and evolutionary biology of the EM symbiosis shared between R. subgenus Villosuli and trees of the genus Pseudotsuga. Two members...
Ph.D. candidate Qi Wei's thesis consists of two projects: Chemotherapy Project: a study based on the research paper "Predicting chemotherapy response of various cancer types using a variational auto-encoder approach" submitted to the bioRxiv preprint archive and accepted by the BMC bioinformatics; and Wound Monitor Project: implementing and assessing analytics...
The popularity of hop-forward American craft beers has had a profound impact on the use of hops as an ingredient; where hops were once thought of as the “spice” of beer, they may now be considered the primary driver of flavor in beer styles such as American India Pale Ales....
This dissertation is divided into two major chapters. The first chapter covers the geologyof the Encuentro deposit with emphasis in the intrusion sequence, vein mineral assemblages and distribution, and age of mineralization. The data used for this section includes field mapping, petrography, elemental analysis of biotite, and isotopic geochronology. The...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Most of today’s Internet of Things (IoT) applications assume that data will be moved offdevices into centralized cloud platforms. While existing IoT systems leverage cloud-based analytics for meaningful data reasoning, the assumption that data should always be moved off the devices is problematic. The amount of data to be moved...
Advances in sensor technology are greatly expanding the range of quantities that can be measured while simultaneously reducing the cost. However, deployed sensors drift out of calibration and fail, so every sensor network requires quality control procedures to promptly detect these failures. To address these problems, we propose a two-level...
To users, mobile touchscreen devices have appealing characteristics; among these characteristics is intuitiveness, which leads to mobile devices being used almost everywhere by almost everyone to accomplish almost anything. This statement, to some degree, holds for children too. Despite touchscreen devices’ intuitiveness and popularity, we don’t know much about how...
Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that...
Viruses and other selfish genetic elements are dominant entities in the biosphere, with respect to both physical abundance and genetic diversity. Various selfish elements parasitize on all cellular life forms. The relative abundances of different classes of viruses are dramatically different between prokaryotes and eukaryotes. In prokaryotes, the great majority...
At the May 19, 1982 meeting of the Governing Council of the
United Nations Environment Program, Kenya President Daniel Arap
Moi summarized a growing international feeling that there is a
need for non-governmental organizations (NGOs) to get more
involved in international conservation efforts with the following
statement:
"The issue before...
Enzymatic hydrolysis is a critical process in the conversion of lignocellulosic biomass into biofuels and biochemicals. Achieving high efficiencies and productivity during the enzymatic hydrolysis of biomass is the key for the commercially viable process. Downstream processing challenges require high product titers which in turn require the use of high...
Fungi in the genus Tolypocladium are diverse in their host associations, but the predominant ecologies include parasites of the ectomycorrhizal genus Elaphomyces and pathogens of insects. The aim of this dissertation research is to examine the evolution of these fungi and their host associations. To accomplish this several lines of...
This is a listing of both PhD and Master's· theses relating to the areas of forestry issued during the period from July 1976 to June 1981. The
list is arranged first by state, then by college or university within each state. Authors of theses are arranged alphabetically under each of...
Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
The climate of the Pacific Northwest is in flux, and existing forest ecosystems are stressed and poised to shift in fundamental ways, with or without human intervention. This dissertation probes the nature of forest responses to environmental change through investigations of morphology and genetics of three species of alder co-occurring...
This dissertation investigated potential ecological limitations to seedling regeneration in young, seasonally dry, evergreen forest restoration plantations in northern Thailand. We explored whether recruitment of colonizing tree species in the restoration plantations can be attributed to seed dispersal mode (i.e. abiotic or animal dispersal) and seed size. We did this...
Cell migration is fundamental for physiological processes such as immune re-sponses, wound healing and development. It is also a critical characteristic of metastatic cancer cells. An extensive amount of studies have focused on 2D sub-strates in order to understand the mechanism of cancer metastasis. However, much less is known about...
New materials with superior mechanical properties, such as increased strength and hardness, have been developed to allow for new and improved products. However, the mechanical properties that make these materials useful also makes them difficult to process using conventional methods. New machining processes need to be developed to generate products...
In this dissertation, a series of studies in the field of terahertz (THz) science are presented, specifically using nonlinear THz spectroscopy. We exploit huge field enhancement and subwavelength confinement in plasmonic structures. There are three distinct projects which will be discussed: nonlinear THz spectroscopy using plasmonic induced transparency (PIT), THz-triggered...
This multiple case study explores issues of equity in science education through an examination of how teachers' reasoning patterns compare with students' reasoning patterns during inquiry-based lessons. It also examines the ways in which teachers utilize students' cultural and linguistic resources, or funds of knowledge, during inquiry-based lessons and the...
This is a bibliography of doctoral dissertations and masters' theses in forestry and related topics issued during the period from July 1981 through June 1990. The colleges and universities included are all accredited by the Society of American Foresters. The actual listings were supplied by the individual institutions. Topics covered...
Over time, Open Source Software (OSS) has become indispensable in the creation and upkeep of software products, serving as the fundamental building block for widely used solutions in our daily lives, including applications that enable communication, entertainment, and productivity. A sustainable OSS ecosystem is one that attracts and retains a...
A method based on fatty acid (FA) analysis is used to profile microbial community structure (MCS). Various extraction protocols are available, which alter the types of FAs extracted from soils. The more time consuming but widely used protocol extracts only FAs from phospholipids (PLFA). This technique is desirable because PLFAs...
It is desirable for complex engineered systems to perform missions efficiently and economically, even when these missions' complex, variable, long-term operational profiles make it likely for hazards to arise. It is thus important to design these systems to be resilient so that they will actively prevent and recover from hazards...