The World Health Organization (WHO) defines female genital cutting (FGC) as “all procedures that involve partial or total removal of the external female genitalia, or other injury to the female genital organs for non-medical reasons” (WHO, 2010). This practice has existed in Africa for thousands of years, but over the...
Food insecurity (FI) is a commonly understood issue in colleges including Oregon State University (OSU), yet examining FI yields deeper complexities of great interest. Food insecurity at OSU is a symptom in a greater complex of basic needs pressures experienced by students in the higher education system, including financial, social,...
In 2019, a multi-cohort population of the typically estuarine burrowing shrimp Neotrypaea sp., was discovered approximately 7 miles offshore of Newport, Oregon. Morphological analysis of the offshore population, microbial sediment sequencing, and species distribution modeling was conducted with this new offshore population. In order to identify Neotrypaea sp. to the...
Propose a sampling plan to determine Hg contamination in the Nanay river basin.
The sampling plan is for a feasibility pilot, to investigate whether it is possible to safely collect samples for Hg analyses. Future studies will build on these initial results.
Isolated approaches at signalized intersections with posted speed limits of 45 mph or greater generally experience large numbers of rear-end and angle collisions. A combination of less attentive drivers, high operating speeds, and less than ideal intersection characteristics can result in crash frequencies well above expected rates. A number of...
Rice (Oryza sativa) is a common crop found in various regions worldwide where it is considered a staple food. Though widespread, O. sativa plants' growth, development, and yield are affected by environmental/abiotic stresses including drought, salinity, flooding, cold, heat, etc. Particularly, salinity stress leads to dehydration, overwhelms potassium pumps, and...
In light of broadening racial/ethnic educational attainment gaps, growing diversity within young populations, and the increasingly critical relationship between higher education and outcomes in adulthood, understanding the factors that shape educational attainment is an especially important task for research. With this goal in mind, the current study examined how national...
Biogeochemical mechanisms employed by key organisms, or symbiotic associations of organisms, transform the function and structure of their environment through processes recognized as ecosystem engineering. This dissertation seeks to investigate organism-ecosystem interactions that serve globally significant ecological functions in marine systems and impact how systems respond to environmental change. Using...
Toughened ceramics, or bridging ceramics, are being developed in an attempt
to widen the application base of traditional ceramics, which are brittle and have low
resistance to crack extension. The crack growth resistance of these extrinsically
toughened ceramics has been shown to increase with crack length, and unlike
traditional ceramics,...
Described as one of the most destructive pathogens of agricultural crops and forest trees, Phytophthora is a genus of microorganisms containing over 100 known species. Phytophthora alni has caused collar and root disease in alders throughout Europe and a form of the species has recently been isolated in North America....
Slow moving earthflows (0.1 15 m/yr.) may constrict valley
floors and directly impinge on stream channels. Earthflows that
move laterally into channels deliver organic and inorganic material
to the stream from the earthflow toe. If the amount and particle
size of this material is too large to be removed by...
Ceratomyxa shasta is a myxozoan parasite that infects salmonid fishes causing the disease ceratomyxosis that is characterized by severe hemorrhage and necrosis of the intestine and death of the fish host. Ceratomyxa shasta is endemic to the Pacific Northwestern United States and Canada, where epizootics are reported for both wild...
Skeletal muscles provide several functions, including, yet not limited to, voluntary body movement and locomotion, posture and body position, and soft tissue support. Skeletal muscles also play a role in metabolism, requiring energy to facilitate contraction. Each skeletal muscle serves a different purpose despite seeming to perform the same task....
Previous research has shown that women are increasingly sexualized in a variety of media contexts. I conducted a content analysis of film trailers from 2018 and 2019 to examine the relationship between the sexualization and objectification of female-presenting characters to the popularity of the film and its trailer. A random...
Population trends and patterns in species distributions are the major currencies used to examine responses by biodiversity to changing environments. Effective conservation recommendations require that models of both distribution dynamics and population trends accurately reflect reality. However, identification of the appropriate temporal and spatial scales of animal response, and then...
Across the globe, Marine Protected Areas (MPAs) have been established to protect biodiversity, sustain fisheries, and preserve cultural resources. However, there exist broad differences among MPAs with respect to their establishment stage and protective regulations, making it difficult to quantify how much ocean protection is actually occurring. This thesis utilizes...
The geologic processes at work in American Samoa have long been a point of scientific debate. Of its numerous volcanic formations, few breach sea level, leaving an enormous proportion of their mass unavailable to traditional observation. This study aims to describe the deep sea geomorphology of American Samoa through compilation,...
Stratigraphy and chronology are essential to sedimentological study of Earth system histories. And, stratigraphy and chronology are often challenging and interesting problems themselves. The Quaternary (2.588 Ma - present) experienced paleoenvironmental and paleo-geomagnetic variability well outside the range of the recent instrumental record, providing the opportunity to place recent observations...
A stochastic process is given by a family of random variables indexed by elements of a set. We have considered stochastic processes of three different types, each involving an associated martingale structure. Martingale is a sequence of random variables for which the conditional expectation at a certain time point given...
Aromatic hydrocarbons represent a large class of environmental contaminants that have a broad range of structures, physicochemical properties, and toxicities. Arising from the burning of organic matter, particularly fossil fuels, they are both widespread and abundant in all environmental compartments. Both monoaromatic hydrocarbons (BTEX) and polycyclic aromatic hydrocarbons (PAHs) are...
Differential expression (DE) analysis is a key task in gene expression study, because it uncovers the association between expression levels of a gene and the covariates of interest. This dissertation pertains to two particular aspects of DE analysis—identifying stably expressed genes for count normalization and accounting for correlation between DE...
Structural engineered wood manufacturers need a quantitative measurement technique to determine the ratio of wood to adhesive failure in their shear specimens. Visual estimation of percent wood failure has long stood as an extremely subjective quality control approach according to ASTM D5266 – Standard Practice for Estimating the Percentage of...
Funk’s (1991) cockpit task management (CTM) theory is structurally consistent with cognitive multitasking models: it addresses managing multiple and concurrent tasks in three stages: situation awareness, response selection, and response execution. Based on CTM theory, Colvin, Funk and Braune (2005) hypothesized that the following six factors may affect task prioritization:...
Sclerotinia crown rot, caused by Sclerotinia minor and S. sclerotiorum,
is a disease of pyrethrum in Australia that may cause substantial decline
in plant density. The spatiotemporal characteristics of the disease
were quantified in 14 fields during three growing seasons. Fitting the
binary power law to disease incidence provided slope...
Questions:
Popular methods to analyse community–trait–environment relationships constrain community patterns by trait and environment relationships. What if some traits are strongly associated with community composition but unrelated to environmental variables and vice versa? We take a different approach, unconstrained by this assumption using non-parametric methods. We applied this technique to...
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environmental and fire
age gradients
Peter R. Nelson, Bruce McCune, Carl Roland & Sarah Stehn
Keywords
Alaska
We investigated habitat attributes related to the occupancy of the globally rare and endangered
epiphytic lichen, Erioderma pedicellatum, in a newly discovered (2009) population center in Denali National
Park and Preserve (DNPP), Alaska. We measured forest, tree and epiphytic lichen community
characteristics on eighty-five systematically selected plots in four study...
Oomycete and fungal pathogens threaten food, fiber, and forests around the world. With climate change, these pathogens are expected to emerge more frequently. Evolution can facilitate their emergence through mechanisms such as mutations that change or expand host range. Characterizing evolutionary mechanisms in plant pathogens will contribute to our ability...
Since the discovery of penicillin in 1928, the fungal kingdom has remained a fertile source for the discovery of new, biologically active, natural products. Further, as natural products continue to be discovered from fungi, a deeper understanding of the critical role of specialized metabolism in fungal ecology is afforded. The...
Ocean acidification is a global, long-term problem whose ultimate solution requires carbon dioxide reduction at a scope and
scale that will take decades to accomplish successfully. Until that is achieved, feasible and locally relevant adaptation and
mitigation measures are needed. To help to prioritize societal responses to ocean acidification, we...
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adaptation of US shellfisheries
to ocean acidification
Julia A. Ekstrom1*†, Lisa Suatoni2, Sarah R. Cooley3
Growing evidence indicates that disrupting the microbial community that comprises the intestinal tract, known as the gut microbiome, can contribute to the development or severity of disease. As a result, it is important to discern the agents responsible for microbiome disruption. While animals are frequently exposed to a diverse array...
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Restructuring of the Microbiome in Adult
Zebrafish
Christopher A. Gaulke1, Carrie L. Barton2,3, Sarah
Sea star wasting disease (SSWD) first appeared in Oregon in April 2014, and by June had spread to most of the coast. Although delayed compared to areas to the north and south, SSWD was initially most intense in north and central Oregon and spread southward. Up to 90% of individuals...
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, Angela Johnson¤, Jenna Sullivan,
Sarah Gravem, Francis Chan
Department of Integrative Biology, Oregon
Exposure to microbial pathogens is the primary concern of sanitary sewer overflows; however, sewage spills may also be a significant source of toxic metals, including methylmercury (MeHg). Between November 2015 and January 2017, after Hurricane Joaquin, surface water samples were collected routinely from three creeks in Columbia, SC. Routine sampling...
In Australia, pyrethrum (Tanacetum cinerariifolium) is affected by a foliar disease complex that can substantially reduce green leaf area and yield. Historically, the most important foliar disease of pyrethrum in Australia has been ray blight, caused by Stagonosporopsis tanaceti, and other fungi generally of minor importance. Temporal fluctuations in the...
To gain a better understanding of how rapidly microbial communities respond to different magnitudes of perturbation that mimic minor or catastrophic disturbances.
Two montane sites in the western Cascade Mountains of Oregon with adjacent areas of forest and meadow vegetation were studied. A reciprocal transplant experiment evaluated both minor (soil...
In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
We investigated intra-specific variation in the response of salmon to infection with the
myxozoan Ceratomyxa shasta by comparing the progress of parasite infection and measures of
host immune response in susceptible and resistant Chinook salmon Oncorhynchus tshawytscha at
days 12, 25 and 90 post exposure. There were no differences in...
Although field-collected recordings typically contain multiple simultaneously vocalizing birds of different species, acoustic species classification in this setting has received little study so far. This work formulates the problem of classifying the set of species present in an audio recording using the multi-instance multi-label (MIML) framework for machine learning, and...
Next-generation DNA sequencing (NGS) approaches are rapidly surpassing Sanger sequencing for characterizing the diversity of
natural microbial communities. Despite this rapid transition, few comparisons exist between Sanger sequences and the generally
much shorter reads of NGS. Operational taxonomic units (OTUs) derived from full-length (Sanger sequencing) and pyrotag (454
sequencing of...
This assessment outlines an enhanced planning approach for West Coast estuaries that incorporates an evaluation of the regional context for estuarine conservation and recommends an approach to site-scale planning with more focus on ecological processes and functions.
At a time of rapid global change, a socio-ecological system (SES) approach can provide a framework through which to quantify and communicate the risks and uncertainties of coupled human-natural systems. Islands, and tropical coral reef islands in particular, can be excellent models for SES research since they may be considered...
Toxoplasma gondii, the most common parasitic infection of human brain and eye, persists across lifetimes, can progressively damage sight, and is currently incurable. New, curative medicines are needed urgently. Herein, we develop novel models to facilitate drug development: EGS strain T. gondii forms cysts in vitro that induce oocysts in...
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,
Sarah Dovgin
2
, Louis Weiss
11
, Gael Brasseur
14
, Dyann Wirth
6,7
, Michael Kent
9
, Leroy
.................................................................................................. Sarah Ray, Winona Soward, Edna Smith
BLUE BELLS ............................................ Merle
Vineyard acreage in Oregon continues to increase at a rapid pace. In the past two years alone 1600 acres of new vineyard land have been planted (Rowley et al., 2000). Much of this has been on phylloxera-resistant rootstocks. This practice is strongly encouraged, since it is the only practical way...
We compiled existing data and information to characterize the condition and trends in high priority natural resources in Ebey’s Landing National Historical Reserve (EBLA, or "the Reserve"). We identified 29 indicators to evaluate seven major resource concerns. For each indicator we attempted to define reference conditions to which we could...
Published January 1916. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Despite ongoing initiatives and research efforts, the persistent underrepresentation of marginalized groups in Science, Technology, Engineering, and Math (STEM) disciplines in the U.S. has seen little improvement. This study posits that a fundamental change in teacher preparation can lead to more inclusive STEM learning environments. It centers on the development...
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Case Study H3 - Sarah
Hereditary variation is a vital component in the development of new and improved cultivars of landscape plants. Sources of hereditary variation include naturally occurring variation, recombination due to controlled crosses, artificial mutagenesis, and genetic modification via biotechnology. Here I explore all methods with the exception of genetic modification via biotechnology....
The role of science in marine policy, and environmental policy in general, is a debated topic. Currently, there is an increasing desire for transparent and participatory democracy that involves more input from local residents and other non-experts. These demands often conflict with the increasing complexity of problems and the real...
The COVID-19 pandemic became the deadliest epidemic since the Influenza pandemic in the early 1900s. (Centers for Disease Control and Prevention, 2023). Every government level across the United States had differing responses to COVID-19, and politicians have been the center of attention for their role in COVID policy support or...
The purpose of this study was to identify the most recent
trends in Clothing and Textiles, to find whether any relationship
existed between them, and whether there was difference of emphasis
between large and small schools.
The information about existing trends in Clothing and Textiles
was collected from literature published...
Fast, reliable internet access is shown to have numerous economic benefits, including contributing to growth, increasing GDP, decreasing unemployment and depopulation of rural areas, and encouraging competition. However, in the United States, there are large sections of the population that are left severely underserved – mostly rural, low-income, and minority...
This paper examines albedo perturbation and radiative forcing after a high-severity fire in a
mature forest in the Oregon Cascade Range. Correlations between postfire albedo and seedling, sapling,
and snag (standing dead tree) density were investigated across fire severity classes and seasons for years
4-15 after fire. Albedo perturbation was...
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partial mortality and scorched-crown plots, and dominated by small
diameter snags (Figure 2c). By the end
Restoration of exotic annual grass-invaded rangelands is needed to improve ecosystem function and services.
Increasing plant species richness is generally believed to increase resistance to invasion and increase desired
vegetation. However, the effects of species richness and individual plant life forms in seed mixes used to restore
rangelands invaded by...
Medusahead (Taeniatherum caput-medusae [L.] Nevski) is an exotic annual grass invading western rangelands. Successful
revegetation of invaded-plant communities can be prohibitively expensive because it often requires iterative applications of
integrated control and revegetation treatments. Prescribed burning has been used to control medusahead and prepare seedbeds
for revegetation, but burning has...
Wyoming big sagebrush (Artemisia tridentata ssp. wyomingensis [Beetle & A. Young] S.L. Welsh) plant communities with degraded native herbaceous understories occupy vast expanses of the western United States. Restoring the native herbaceous understory in these communities is needed to provide higher-quality wildlife habitat, decrease the risk of exotic plant invasion,...
For the first objective of this thesis, we attempt to understand the role of water flow and directionality in determining steelhead (Oncorhynchus mykiss) and spring/summer and fall Chinook (O. tschawytscha) migration patterns within the Columbia River Estuary and plume by integrating recent advances in biotelemetry and environmental observation and forecasting...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Wild populations of fish are faced with a multitude of stressors, which may include human interaction, toxins, and disease. Benzo(a)pyrene (BaP), a known carcinogen and immunotoxin, has been reported in the stomach contents of juvenile chinook salmon, Oncorhynchus tshawytscha, in urban waterways. We investigated the impact of chronic dietary exposure...
Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
To constrain the fluxes of methane (CH4) in the water column above the accretionary
wedge along the Cascadia continental margin, we measured methane and its stable carbon
isotope signature (δ¹³C-CH₄). The studies focused on Hydrate Ridge (HR), where
venting occurs in the presence of gas-hydrate-bearing sediments. The vent CH₄ has...
Altered skeletal muscle fat metabolism is linked to changes in skeletal muscle insulin sensitivity. Whereby the accumulation of bioactive signaling lipids (i.e., diacylglycerols and ceramides) within skeletal muscle are negatively associated with insulin sensitivity and the exercise-induced changes to fatty acid trafficking are related to improved skeletal muscle insulin action....
As the Internet has radically changed modern life, much attention has been paid to the outcomes produced by the diffusion of online access. In the modern economy, reliable Internet access is a crucial tool offering better access to information and opportunities, increasing work efficiency, and facilitating personal connection, leaving those...
Eighty-one microbial species isolated from seafoods and other marine sources were examined to determine the extent of interactions among these species. Spot-plates, cross-plates, and concurrent growth experiments at 7, 15, 20, and 30 C indicated that Lactobacillus species were capable of inhibiting other microorganisms. Lactobacillus species isolated from oysters and...
Type-2 diabetes (T2D) has become a pandemic. The main impairment in T2D is skeletal muscle insulin resistance (IR) and is often associated with obesity. Despite decades of study, the mechanisms of IR have not been fully resolved. Evidence has implicated mitochondrial dysfunction as a potential cause and/or consequence of IR....
The aggregation of 12 nm citrate-stabilized gold nanoparticles (cit-AuNPs) in the presence of four
different natural organic matter (NOM) isolates and a monovalent electrolyte (KCl) was evaluated using
time-resolved dynamic light scattering. All four NOM isolates stabilized the cit-AuNPs with respect to
aggregation. However, specific effects varied among the different...
High‐resolution surveys of oceanographic and atmospheric conditions made during the
winter over the inner shelf off northwest Australia are used to examine the coastal ocean
response to large outgoing heat and freshwater fluxes. Relatively cool, low‐humidity air
blows off the Australian continent out over the tropical continental shelf, resulting in...
Crown gall disease is caused by the ubiquitous soil bacterium Agrobacterium tumefaciens which transfers a portion if DNA (T-DNA) into the plant cell. Preventing infection by using the biocontrol strain Agrobacterium radiobacter K84 is currently the only defense for crown gall. Two different resistance strategies were examined in this work....
Google Earth has given internet users the power of a virtual globe at their fingertips. It is
a free, easy to use tool that avoids the need for technical training, and uses a simple,
intuitive interface. For this reason, Google Earth appeals to general and more specialized
users. This project...
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Heather Reiff, Sarah
Mikulak, Stephanie Ichien, and Neal McIntosh for their continued support and
The design of two 2.4GHz CMOS LC balanced oscillators in the 0.25μm National BiCMOS process for Bluetooth specifications is presented. These oscillators achieve low phase noise with low power consumption. At a frequency offset of 500KHz from the 2.11GHz carrier, the measured phase noise is -101.9dBc/Hz for the NMOS oscillator...
Habitat for wildlife species that depend on sagebrush ecosystems is of great management concern. Evaluating how management activities and climate change may affect the abundance of moderate and high-quality habitat necessitates the development of models that examine vegetation dynamics, but modeling tools for rangeland systems are limited. I developed state-and-transition...
Previous work introduced the GenderMag method, a software inspection method used to help software creators identify features within their software that are not gender-inclusive. Inclusiveness of software (gender or otherwise) matters because supporting diversity matters—it is well-known that the more diverse a group of problem-solvers, the higher the quality of...
The purpose of the study was to determine whether taking a
course of study about ethnic minorities and racial prejudice in the
United States would produce a statistically significant change in the
attitudes of white, middle-class high school students toward three
ethnic minorities i. e., Blacks, Native Americans, and Chicanos....
The intent of this thesis is to develop three creative non-fiction essays exploring the experience of being an undergraduate woman in a STEM field. The essays will all take on variations in form, humor, and perspectives. The purpose is to explore the position of women in STEM and the different...
The purpose of this thesis is to analyze an abrupt case of climate change in the past as a means to understand the mechanisms that force climate change. By looking to past analogs of climate change, we hopefully will gain an understanding of these events, which could be used to...
This study is an investigation into the roles of wildfire and changing agricultural practices in controlling the inter-decadal scale trends of suspended sediment production from semi-arid mountainous rivers. In the test case, a decreasing trend in suspended sediment concentrations was found in the lower Salinas River, California between 1967 and...
Wildfire is a largely terrestrial perturbation broadly recognized as an agent of disturbance and ecological change in forested biomes. Effects of post-fire conditions on biotic components of aquatic systems have been less well-documented, although hypothetically, the two are strongly connected. In fact, the influence of wildfire may be most profound...
As the threat of climate change becomes more imminent and the role of cities in climate adaptation becomes clearer, urban resilience, the ability of a city or urban system to withstand a wide array of shocks and stresses, has gained increasing attention in climate adaptation policy and planning. Critics of...
Soil organic matter (SOM) is the terrestrial biosphere's largest pool of organic carbon (C) and is an integral part of C cycling globally. Soil organic matter composition typically can be traced directly back to the type of detrital inputs; however, the stabilization of SOM results as a combination of chemical...
Transport phenomena specially the ones that occur in the various engineering disciplines such as tissue engineering and natural environment are often complex to analyze mostly due to the dynamic and geometric complexities; as such, they have been the subject of an active and intense area of research in past decades....
The contributions of Palestinian women have historically been discredited and delegitimized. This has occurred both due to societal patriarchy, and due to patriarchal norms being exacerbated by the conditions of living under the violent Israeli occupation and settler colonialism. Yet in actuality, Palestinian women have played many diverse roles in...
Feeding cows flaxseed rich in polyunsaturated fatty acids has been shown to decrease the proportion of saturated fatty acids and increase the proportion of n-3 polyunsaturated fatty acids (PUFAs) in milk. Consuming products enriched in n-3 PUFAs have beneficial effects to human health; thus, feeding cows flaxseed could potentially increase...
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%; Bypass Flaxseed: 0.292%; Figure 2C). Overall, the beneficial effect of rumen-bypass
processing of
Many nonmodel species exemplify important biological questions but lack the sequence resources required to study the genes and genomic regions underlying traits of interest. Reef-building corals are famously sensitive to rising seawater temperatures, motivating ongoing research into their stress responses and long-term prospects in a changing climate. A comprehensive understanding...
Rivers display temporal dependence in suspended sediment–water discharge relationships. Although most work has focused on multi-decadal trends, river sediment behavior often displays sub-decadal scale fluctuations that have received little attention. The objectives of this study were to identify inter-annual to decadal scale fluctuations in the suspended sediment–discharge relationship of a...