Many highly exploited ecosystems are managed on the basis of single-species demographic information. This management approach can exacerbate tensions among stakeholders with competing interests who in turn rely on data with notoriously high variance. In this case study, an application of diet and dive survey data was used to describe...
Juvenile steelhead are known to associate with shiner groups, though they also compete for food. Steelhead form dominance hierarchies within cohorts and aggressively defend feeding territories against all other fish. This study focused on the differential effect of shiner competition on steelhead of different social standing.
Survival of subordinate juvenile...
The lingcod (Ophiodon elongatus) is an important groundfish species in both recreational and commercial fisheries of the Northeastern Pacific. It is a large, fast-growing, generalist predator of invertebrates and fishes. In response to concerns that lingcod may limit populations of rockfishes (Sebastes spp.), I compared the diets of 375 adult...
Water quality problems have been identified in the Chehalis River in the vicinity of Centralia and Chehalis since the 1960's. In 1992, the Washington State Department of Ecology listed four Chehalis River segments, three segments of the Newaukum River, two segments of the Wynoochee River, and three other tributaries -...
A case study was performed in 2000 and 2001 to characterize the thermal pattern of four morphologically similar eastern Oregon streams and to identify the physical and environmental factors that expressed significant and functionally viable relationships with stream temperature (daily maximum, daily minimum and daily rate of heating). Stream and...
Since the early twentieth century, manufacturers of toxic products have attempted
to discredit research linking their product with disease. At the same time they have manufactured their own science designed to minimize risks associated with their products. Much of this activity has been conducted by or through corporate attorneys, endeavors...
Over one third of the earth’s land surface has been modified to some extent for agricultural purposes. The large global footprint of agriculture, combined with the knowledge that existing reserve networks are likely insufficient for long-term conservation of native biodiversity, has necessitated that agricultural systems contribute to conservation of native...
Relatively recent increases in ponderosa pine abundance have effected unprecedented changes to ecosystem structure and function. Efforts to restore ponderosa pine systems are often focused on the manipulation of tree structure and the re-introduction of a more natural fire regime. Successful restoration should also incorporate understory components but information addressing...
Ergovaline is an ergot alkaloid produced by the symbiotic endophyte Epichloë coenophiala which can colonize varieties of the cool-season grass tall fescue (Festuca arundinacea). It is the principle toxicant responsible for the vasoconstrictive and reproductive sequelae seen in “fescue toxicosis” in livestock which consume forage exceeding the threshold of toxicity...
Perennial ryegrass (Lolium perenne) hay is an important source of forage for a variety of livestock species, and is most common in cool, coastal climates such as the Pacific Northwest. An endophyte fungus called Neotyphodium lolii frequently colonizes this grass to promote insect resistance, drought tolerance, and growth enhancement without...
Perennial ryegrass (Lolium perenne) hay is an important source of forage for a variety of livestock species, and is most common in cool, coastal climates such as the Pacific Northwest. An endophyte fungus called Neotyphodium lolii frequently colonizes this grass to promote insect resistance, drought tolerance, and growth enhancement without...
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Cattle Consuming Perennial Ryegrass Straw over 56 Days
Persia Neumann,1 Jennifer M. Duringer,1 A. Morrie
Serotonin regulates many intestinal motor and sensory functions. Altered serotonergic metabolism has been described in human gastrointestinal diseases. The objective of our study was to compare expression of several components of the serotonergic system [serotonin (5-HT), serotonin reuptake transporter protein (SERT), tryptophan hydroxylase-1 (TPH-1), 5-HT receptor[subscript 2B] (5-HT[subscript 2B])] and...
Perennial ryegrass (Lolium perenne) hay is an important source of forage for a variety of livestock species, and is most common in cool, coastal climates such as the Pacific Northwest. An endophyte fungus called Neotyphodium lolii frequently colonizes this grass to promote insect resistance, drought tolerance, and growth enhancement without...
This file includes tidal wetland soils data for 14 sampling areas at 5 sites on the Oregon coast. The sites are Blind Slough (tidal swamp) in the lower Columbia River estuary , Coal Creek (tidal swamp) in the Nehalem estuary, Millport Slough (high marsh) and Siletz Keys (low marsh) in...
This file includes tidal wetland soils data for 14 sampling areas at 5 sites on the Oregon coast. The sites are Blind Slough (tidal swamp) in the lower Columbia River estuary , Coal Creek (tidal swamp) in the Nehalem estuary, Millport Slough (high marsh) and Siletz Keys (low marsh) in...
The objective of this study was to investigate the effects of a flaxseed-supplemented diet on archaeal abundance and gene
expression of methanogens in the rumen of dairy cows. In all, 11 non-lactating dairy cows were randomly divided into two
groups: group A (five cows) and B (six cows). The two...
Cold seep communities with distinctive chemoautotrophic fauna occur where hydrocarbon-rich fluids escape from the seabed. We describe community composition, population densities, spatial extent, and within-region variability of epifaunal communities at methane-rich cold seep sites on the Hikurangi Margin, New Zealand. Using data from towed camera transects, we match observations to...
The manufacturing processes of royal demolition explosive (RDX), or hexahydro-1,3,5-trinitro-1,3,5-triazine, have resulted in
serious water contamination. As a potential carcinogen, RDX can cause a broad range of harmful effects to humans and
animals. The ovine rumen is capable of rapid degradation of nitroaromatic compounds, including RDX. While ruminal RDX-degrading
bacteria...
The manufacturing processes of royal demolition explosive (RDX), or hexahydro-1,3,5-trinitro-1,3,5-triazine, have resulted in
serious water contamination. As a potential carcinogen, RDX can cause a broad range of harmful effects to humans and
animals. The ovine rumen is capable of rapid degradation of nitroaromatic compounds, including RDX. While ruminal RDX-degrading
bacteria...
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, Weizhong Li3, Jennifer M. Duringer4, A. Morrie Craig2*
1 United States Department of Agriculture
Polycentric networks of formal organizations and informal stakeholder groups, as opposed to centralized institutional hierarchies, can be critically important for strengthening the capacity of governance systems to adapt to unexpected social and biophysical change. Adaptive governance is one type of environmental governance characterized by the emergence of networks that stimulate...
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B.C. Chaffin, A.S. Garmestani, H. Gosnell, R.K. Craig
Polycentric networks of formal organizations and informal stakeholder groups, as opposed to centralized institutional hierarchies, can be critically important for strengthening the capacity of governance systems to adapt to unexpected social and biophysical change. Adaptive governance is one type of environmental governance characterized by the emergence of networks that stimulate...
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, USA
B.C. Chaffin a,*, A.S. Garmestani b, H. Gosnell c, R.K. Craig d
a College of Forestry
Polycentric networks of formal organizations and informal stakeholder groups, as opposed to centralized institutional hierarchies, can be critically important for strengthening the capacity of governance systems to adapt to unexpected social and biophysical change. Adaptive governance is one type of environmental governance characterized by the emergence of networks that stimulate...
The manufacturing processes of royal demolition explosive (RDX), or hexahydro-1,3,5-trinitro-1,3,5-triazine, have resulted in
serious water contamination. As a potential carcinogen, RDX can cause a broad range of harmful effects to humans and
animals. The ovine rumen is capable of rapid degradation of nitroaromatic compounds, including RDX. While ruminal RDX-degrading
bacteria...
The ability of ruminal microbes to degrade the explosive compound hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in ovine whole rumen fluid (WRF) and as 24 bacterial isolates was examined under anaerobic conditions. Compound degradation was monitored by high performance liquid chromatography (HPLC) analysis, followed by liquid chromatography tandem mass spectrometry (LC-MS/MS) identification of metabolites....
A simple, fast liquid-liquid extraction method was developed for studying hexahydro-1,3,5-trinitro-1,3,5 triazine (RDX) biodegradation using small sample volumes. The method was tested
in vitro with anaerobic incubations of RDX with whole rumen fluid (WRF) and a commercial S.
acetigenes strain in methanogenic media for RDX. Additionally, validation experiments were
conducted...
While environmental stressors such as hypoxia (low dissolved oxygen) are perceived as a threat to the productivity
of coastal ecosystems, policy makers have little information about the economic consequences for fisheries. Prior
studies based on data aggregated at relatively large spatial (e.g.,1000s km) and temporal (e.g., annual) scales have
typically...
Sediments associated with hydrothermal venting, methane seepage and large organic falls such as whale, wood and plant detritus create deep-sea networks of soft-sediment habitats fueled, at least in part, by the oxidation of reduced chemicals. Biological studies at deep-sea vents, seeps and organic falls have looked at macrofaunal taxa, but...
Published August 2007. A more recent revision exists. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Proper irrigation, despite being one of the most important factors in maintaining a healthy lawn, is the most often overlooked variable in lawn care. This publication describes common turfgrass species, soil water holding capacity, irrigation scheduling, and management practices to optimize irrigation efficiency.
Published May 1980. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Vailulu’u seamount is an active underwater volcano that marks the end of the Samoan hotspot trail (Hart et al., 2000). Vailulu’u has a simple conical morphology (Figure 1) with a largely enclosed volcanic crater at relatively shallow water depths, ranging from 590 m (highest point on the crater rim) to...
Wind stress variability over the Benguela upwelling system is considered using 16 months (01 August 1999 to 29 November 2000) of satellite-derived QuikSCAT wind data. Variability is investigated using a type of artificial neural network, the self-organizing map (SOM), and a wavelet analysis. The SOM and wavelet analysis are applied...
Blood levels of the egg yolk precursor vi-
tellogenin (VTG) can be used as a definitive marker for
the onset and progress of maturation in female teleosts.
In the present study, an enzyme-linked immunosorbent
assay (ELISA) was developed to measure VTG in blood
plasma from three species of temperate basses....
Lō`ihi Seamount defines the volcanically active, leading edge in the Hawaiian hotspot chain. It is located on the submarine flank of Mauna Loa, 30 km south of the island of Hawai`i. Lō`ihi’s summit is at 975-m water depth (Pisces Peak), and the seamount has a pronounced southern rift that extends...
We compiled a lake-water clarity database using publically available, citizen volunteer observations made between 1938 and 2012 across eight states in the Upper Midwest, USA. Our objectives were to determine (1) whether temporal trends in lake-water clarity existed across this large geographic area and (2) whether trends were related to...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
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), Durham, NH.
This User’s Guide is part of a larger report, which is available at http
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
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:
Development of a reference conditions database and a
temperature sensor method for detecting tidal
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
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tidal wetland soils. Appendix 8 in
Brophy, L.S., C.E. Cornu, P.R. Adamus, J.A. Christy, A. Gray, M.A
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
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Invertebrates at CICEET Study Sites. Appendix 11 in
Brophy, L.S., C.E. Cornu, P.R. Adamus, J.A. Christy, A
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
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quantify a range of parameters including tidal and groundwater hydrology,
elevation, water quality, soils
Full-depth velocity and density profiles taken along the 3000-m isobath characterize the semidiurnal
internal tide and bottom-intensified turbulence along the Hawaiian Ridge. Observations reveal baroclinic
energy fluxes of 21 ± 5 kW m⁻¹ radiating from French Frigate Shoals, 17 ± 2.5 kW m⁻¹ from Kauai
Channel west of Oahu, and...
Desde hace muchos años, los jardineros han usado
el compost para mejorar la tierra. Hoy en día también
es una manera importante de reducir la cantidad de
basura que se quema o se añade a los vertederos
públicos. Los desperdicios de jardín y cocina
constituyen hasta el 20 por ciento...
“Perennial ryegrass staggers” is a neurological condition characterized by muscular tremors and ataxia in livestock that ingest the indole diterpene lolitrem B from endophyte-infected perennial ryegrass. While the neurotoxic mechanism of action of ryegrass staggers has been defined, little is known about metabolic and other molecular processes that lolitrem B...
To evaluate the impact of hypoxia (< 2 mg O₂ l⁻¹) on habitat quality of pelagic prey fishes in the northern Gulf of Mexico, we used a spatially explicit, bioenergetics-based growth rate potential (GRP) model to develop indices of habitat quality. Our focus was on the pelagic bay anchovy Anchoa...
In 2014, Oregon State University (OSU) initiated a multi-year project to study humpback whale (Megaptera novaeangliae) migrations in the North Pacific Ocean using satellite tracking technology in combination with genetic and photo-identification (photo-ID) analyses. The study is highly relevant to management, given the need for new information arising from the...
RNA sequencing (RNA-seq) and genotyping-by-sequencing (GBS) were used for single nucleotide polymorphism (SNP) identification from two economically important obligate plant pathogens, Pseudoperonospora cubensis and P. humuli. Twenty isolates of P. cubensis and 19 isolates of P. humuli were genotyped using RNA-seq and GBS. Principle components analysis (PCA) of each data...
The bivalve Pacific geoduck (Panopea generosa) has been used in the eastern North Pacific Ocean to create proxies for environmental factors such as temperature and oceanographic conditions. This type of research depends upon accurate age determination of Pacific geoducks, which historically was based on shell growth-increment counts. A recent study...
Between 2007 and 2009, researchers from Green Point Consulting, Oregon State University, and the South Slough National Estuarine Research Reserve collected data on ecological and physical characteristics at five high-quality “least disturbed” tidal wetland sites in four Oregon estuaries.
The reference sites included in this project are (1) Blind Slough...
Next-generation DNA sequencing (NGS) approaches are rapidly surpassing Sanger sequencing for characterizing the diversity of
natural microbial communities. Despite this rapid transition, few comparisons exist between Sanger sequences and the generally
much shorter reads of NGS. Operational taxonomic units (OTUs) derived from full-length (Sanger sequencing) and pyrotag (454
sequencing of...
The Gulf Stream is a major conduit of warm surface water from the tropics to the subpolar North Atlantic. Here we observe and simulate a submesoscale (<20 km) mechanism by which the Gulf Stream exchanges water with subpolar water to the north. Along isopycnals, the front has a sharp compensated...
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea...
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea...
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previously as A. pallida and A. pulchella, respectively, recent global genotyping has 7
found two
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea...
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The genome of Aiptasia, a sea anemone model for
coral
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea...
Laser-based spectroscopic techniques, such as cavity ring-down spectroscopy (CRDS), provide a new, cost effective and more widely available approach to measure the oxygen isotope ratio in water molecules, H₂¹⁸O/H₂¹⁶O (δ¹⁸O), and are used increasingly to measure δ¹⁸O in the world's oceans. Here, we present results from an interlaboratory comparison designed...
From mid-May to August 2011, extreme runoff in the Columbia River ranged from 14,000 to over 17,000 m³/s, more than two standard deviations above the mean for this period. The extreme runoff was the direct result of both melting of anomalously high snowpack and rainfall associated with the 2010–2011 La Niña....
Although there are considerable site-based data for individual or groups of ecosystems, these datasets are widely scattered, have different data formats and conventions, and often have limited accessibility. At the broader scale, national datasets exist for a large number of geospatial features of land, water, and air that are needed...
The cotton bollworm, Helicoverpa armigera (Hubner) is one of the most serious insect pest species to evolve resistance against many insecticides from different chemical classes. This species has evolved resistance to the pyrethroid insecticides across its native range and is becoming a truly global pest after establishing in South America...
To meet societal needs, modern estuarine science needs to be interdisciplinary and collaborative, combine discovery with hypotheses testing, and be responsive to issues facing both regional and global stakeholders. Such an approach is best conducted with the benefit of data-rich environments, where information from sensors and models is openly accessible...
The authors present inferences of diapycnal diffusivity from a compilation of over 5200 microstructure
profiles. As microstructure observations are sparse, these are supplemented with indirect measurements of
mixing obtained from (i) Thorpe-scale overturns from moored profilers, a finescale parameterization applied to
(ii) shipboard observations of upper-ocean shear, (iii) strain as...
We live in an exciting time for biology. Technological advances have made data collection easier and cheaper than we could ever have imagined just 10 years ago. We can now synthesize and analyze large data sets containing genomes, transcriptomes, proteomes, and multivariate phenotypes. At the same time, society's need for...
The carbon system of the western Arctic Ocean is undergoing a rapid transition as sea ice extent and thickness decline. These processes are dynamically forcing the region, with unknown consequences for CO2 fluxes and carbonate mineral saturation states, particularly in the coastal regions where sensitive ecosystems are already under threat...
Submersible exploration of the Samoan hotspot revealed a new, 300-m-tall, volcanic cone, named Nafanua, in the summit crater of Vailulu’u seamount. Nafanua grew from the 1,000-m-deep crater floor in <4 years and could reach the sea surface within decades. Vents fill Vailulu’u crater with a thick suspension of particulates and...
Endogenous small RNAs (endo-siRNAs) interact with Argonaute (AGO) proteins to mediate
sequence-specific regulation of diverse biological processes. Here, we combine deep-sequencing and
genetic approaches to explore the biogenesis and function of endo-siRNAs in C. elegans. We describe
conditional alleles of the dicer-related helicase, drh-3, that abrogate both RNA interference and...
Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen
concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global
assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
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-Llodra17, Michael Rex18, Henry A. Ruhl6, Craig R. Smith19,
Andrew K. Sweetman20, Andrew R. Thurber21
Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen
concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global
assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
Lateral stirring is a basic oceanographic phenomenon affecting the distribution of physical, chemical, and biological fields. Eddy stirring at scales on the order of 100 km (the mesoscale) is fairly well understood and explicitly represented in modern eddy-resolving numerical models of global ocean circulation. The same cannot be said for...
Lateral stirring is a basic oceanographic phenomenon affecting the distribution of physical, chemical, and biological fields. Eddy stirring at scales on the order of 100 km (the mesoscale) is fairly well understood and explicitly represented in modern eddy-resolving numerical models of global ocean circulation. The same cannot be said for...
Lateral stirring is a basic oceanographic phenomenon affecting the distribution of physical, chemical, and biological fields. Eddy stirring at scales on the order of 100 km (the mesoscale) is fairly well understood and explicitly represented in modern eddy-resolving numerical models of global ocean circulation. The same cannot be said for...
The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon¹⁻³. With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental...