Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
The Toba Caldera Complex is the youngest resurgent caldera in the last 100 kyrs, formed from four overlapping eruptions starting 1.2 Myrs ago. The last caldera-forming eruption, the Youngest Toba Tuff eruption, occurred ~74 kyrs ago, emitting 2800 km3 of ash and pumice into the atmosphere and forming the caldera...
Supervolcanic eruptions are among the most catastrophic phenomena on Earth,
erupting 100s-1000s of cubic kilometers of magma, and producing devastating local effects and global climate perturbations. The largest supervolcanic eruption of the last 28 Ma was the 74 ka Youngest Toba Tuff (YTT) eruption from Sumatra, Indonesia, which erupted 2,800...
The composition of the continental crust is closely tied to subduction zone magmatism. Elevated oxygen fugacity (fO₂) plays a central role in fostering crystallization of oxide minerals and thereby aids in generating the calc-alkaline trend of iron depletion that characterizes the continents. Along continental margins, arc magmas erupt through continental...
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by a more expansive dataset by deHoog et al., (2004) who show that Fe-Ti oxides from Lascar
lie
The composition of the continental crust is closely tied to subduction zone magmatism. Elevated oxygen fugacity (fO₂) plays a central role in fostering crystallization of oxide minerals and thereby aids in generating the calc-alkaline trend of iron depletion that characterizes the continents. Along continental margins, arc magmas erupt through continental...
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and de Silva (1995).
gde Silva et al. (1993).
characterized samples, including lavas, pumice, and
Foliar fungi – pathogens, endophytes, epiphytes – form taxonomically diverse communities that affect plant health and productivity. The composition of foliar fungal communities is variable at spatial scales both small (e.g., individual plants) and large (e.g., continents). However, few studies have focused on how environmental factors and host plant traits...
Passive sampling devices (PSDs) were used to measure air vapor and water dissolved phase concentrations of polycyclic aromatic hydrocarbons (PAHs) and oxygenated PAHs (OPAHs) at two different environmentally contaminated sites. Environmental contaminates like PAHs and OPAHs are present in both the atmospheric and aqueous environmental compartments. It is known that...
Winter squash (Cucurbita maxima) grown in Oregon’s Willamette Valley for edible seed, frozen foods, and fresh markets is susceptible to an undiagnosed soilborne disease. Diseased squash fields exhibit symptoms of stunting, root and crown rot, vascular discoloration, and late-season wilt, which in extreme cases can lead to total crop failure....
Correction
5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Convergent evolution is common throughout the tree of life, but the molecular mechanisms
causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple
fungal clades, but the genetic causes and consequences of their evolutionary origins are
unknown. Here we show that the potential to develop yeast forms...
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. Davis7, Sharon L. Doty8, GSybrende Hoog9, B. Franz Lang10, Joseph W. Spatafora11,
Francis M. Martin12
Natural gas extraction, often referred to as “fracking,” has increased rapidly in the U.S. in recent years. To address potential health impacts, passive air samplers were deployed in a rural community heavily affected by the natural gas boom. Samplers were analyzed for 62 polycyclic aromatic hydrocarbons (PAHs). Results were grouped...
Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W....
The ascomycete Geosmithia morbida and the walnut twig beetle Pityophthorus juglandis are associated with thousand
cankers disease of Juglans (walnut) and Pterocarya (wingnut). The disease was first reported in the western United States
(USA) on several Juglans species, but has been found more recently in the eastern USA in the...
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study of 209 G. morbida isolates collected
from Juglans and Pterocarya from 17 geographic regions
The recovery of a 1.5 million yr long ice core from Antarctica represents a keystone of our understanding of Quaternary climate, the progression of glaciation over this time period and the role of greenhouse gas cycles in this progression. Here we tackle the question of where such ice may still...
Beauveria sinensis sp. nov. was isolated from a larva of Geometridae (Lepidoptera) collected from Tiantangzhai, Anhui province, China. It is characterized by elongated ellipsoidal to cylindrical conidia, solitary conidiogenous cells that are cylindrical or with slightly swollen bases, white to pale pink colony in culture, and small mycelial pellets consisting...
The fungi that cause mold and stain of freshly sawn lumber result in millions of dollars in losses to the forest products industry. Stain and mold are typically prevented by either kiln drying or by application of a topical fungicide. While these treatments are effective, kiln drying is costly and...
Cenococcum is a genus of ectomycorrhizal Ascomycota that has a broad host range and geographic distribution. It is not known to produce either meiotic or mitotic spores and is known to exist only in the form of hyphae, sclerotia and host-colonized ectomycorrhizal root tips. Due to its lack of sexual...
Subduction zone recycling of volatiles (H₂O, Cl, S, F) is controlled by the nature of subducted materials and the temperature-pressure profile of the downgoing slab. We investigate the variability in volatile and fluid-mobile trace element enrichment in the Sunda arc using melt inclusion data from Kawah Ijen and Tambora volcanoes,...
Fungi are capable of growth on a wide variety of carbon sources, both living and dead. They can produce an arsenal of enzymes and transporters for harvesting sugars, polysaccharides, amino acids, lipids and micronutrients from their environments [1]. Within the nucleus of a cell, transcription factors (TF) control whether genes...
Rhizopus microsporus is a globally ubiquitous opportunistic human and plant pathogen that is known to harbor endosymbiotic bacteria. Differences between populations of clinical and environmental R. microsporus isolates have yet to be assessed on a global scale. Whole-genome sequence data were used to explore fungal biology and to assess potential...
Gonadotropin-releasing hormone (GnRH) neurons are able to trigger the release of luteinizing hormone and follicle-stimulating hormone which control the maturation of oocytes and ovulation which is vital for reproduction. They are the most downstream neurons that project to the median eminence into the pituitary portal where they release GnRH. Modulation...
Resazurin (Raz) and its reaction product resorufin
(Rru) have increasingly been used as reactive tracers to quantify
metabolic activity and hyporheic exchange in streams.
Previous work has indicated that these compounds undergo
sorption in stream sediments. We present laboratory experiments
on Raz and Rru transport, sorption, and transformation,
consisting of...
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-transformed into the time domain by
the numerical method of DeHoog et al. (1982).
2.5 Parameter inference
Music is a global tradition. Different cultures around the word have different musical traditions and histories, but all people create music for the same reason: the love of music and expressing oneself. In the spring of 2011, the Oregon State University Music Department entered into a cultural exchange program with...
The primary goal of this study is to assess the impact of a subduction component
added to the mantle wedge beneath the Oregon Cascades to the composition and fO2 of
primitive Cascade basalts. Olivine-hosted melt inclusions from compositionally diverse
basalts across the Cascade arc (~100 km) are utilized in an...
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; Hedenquist and Lowenstern, 1994; Wallace, 2003; deHoog
et al., 2004; Wallace, 2005).
49
Magmatic
Published March 1989. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Molecular phylogenctic analyses indicate that the monophyletic classes Orbiliomycetes and Pezizomycetes are among the earliest diverging branches of Pezizomycotina, the largest subphylum of the Ascomycota. Although Orbiliomycetes is resolved as the most basal lineage in some analyses, molecular support for the node resolving the relationships between the two classes is...
My research has focused on understanding N and C cycling in soils at small scales. Isotope dilution methods commonly used to estimate gross rates of soil chemical transformations assume homogeneous distribution of label. I explored the effects of diffusion limitations on isotope dilution experiments in soil aggregates using spherical diffusion-reaction...
Mass transfer processes were evaluated in an artificial, non-uniform porous medium with a power law distribution of diffusion rate coefficients obtained from physical characterization of solute and porous medium. Breakthrough curves of several pulse experiments conducted at different velocities were compared (1) to analytical expressions for concentrations at mass transfer...
Torrubiella is a genus of entomopathogenic fungi in the Clavicipitaceae
(Ascomycota). Species of the genus produce superficial perithecia on a loose mat of
hyphae that forms directly on the host. The genus is estimated to contain about 70
species. Torrubiella is hypothesized to be a close relative of Cordyceps because...
The specific objectives of this dissertation are to determine subsurface flow
behaviors across different antecedent wetness conditions from a top-down perspective
and to mechanistically assess the hydrological controls on DOC and N transport at the
hillslope and catchment scale. The study area is a small catchment where hillslopes
issue directly...
A perithecial ascomycete, Spataporthe taylori gen. et sp. nov., represented by >70 sporocarps is preserved by
cellular permineralization in marine carbonate concretions dated at the Valanginian-Hauterivian boundary (Early
Cretaceous) from Vancouver Island, British Columbia, Canada. The spheroid perithecia with lumina 330–470 µm
wide and 220–320 µm high are densely distributed...
The primary goal of this study is to assess the impact of a subduction component
added to the mantle wedge beneath the Oregon Cascades to the composition and fO2 of
primitive Cascade basalts. Olivine-hosted melt inclusions from compositionally diverse
basalts across the Cascade arc (~100 km) are utilized in an...
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; Berlo et al., 2004). A
210
Pb excess and a large Li spike in
plagioclase feldspars (up to ~23 g/g
Cordyceps is a genus of perithecial ascomycetes. It includes over 400 species
that are pathogens of arthropods and parasites of the truffle genus Elaphomyces. Based
on the morphology of cylindrical asci, thickened ascus apices and filiform ascospores,
it is classified in the Clavicipitaceae (Hypocreales), which also includes endophytes
and epiphytes...
Fully efficient systolic arrays for the solution of Toeplitz
matrices using Schur algorithm [1] have been obtained. By applying
clustering mapping method [2], the complexity of the algorithm is
0(n) and it requires n/2 processing elements as opposed to n
processing elements developed elsewhere [1].
The motivation of this thesis...
This dissertation is concerned with the behavior of sulfur in intermediate-silicic arc magmas associated with subduction at convergent margins. In particular it focusses on oxidized, sulfur-rich magmas, the conditions at which they might reach sulfate saturation, and implications of sulfate saturation. It is divided into an investigation of natural samples...
Prior to cell cleavage, cytokinetic proteins are recruited into the nascent actomyosin contractile ring. Interactions between spindle microtubules and the cell cortex play a critical role in this recruitment. However, direct evidence for physical interaction between microtubules and the cortex has been lacking. Here we reveal the physical connection between...
Protein disulfide isomerase (PDI), a member of the thioredoxin superfamily, contains two domains with significant sequence homology to the active sites in thioredoxin. PDI facilitates the folding of nascent proteins in the endoplasmic reticulum (ER), binds hormones and Ca²⁺, catalyzes the glutathione dependent reduction of dehydroascorbate, serves as a major...
Black stain root disease (BSRD) is a vascular wilt disease of conifers caused by three varieties of the native, insect-vectored fungal pathogen, Leptographium wageneri (L. wageneri var. wageneri, L. wageneri var. ponderosum, and L. wageneri var. pseudotsugae). Although morphological, physiological, and ecological characteristics differ among the three varieties of L....
Many trace elements (e.g., Zn, Cd, Mo) are essential phytoplankton micronutrients, making them crucial to the marine ecosystem and ultimately the carbon cycle. Because of this association trace metals are also utilized in paleoceanographic studies (e.g., Mo, Cd). However, not much is known about what controls the cycling of these...
In recent years, our ecological knowledge of tropical dry forests has increased dramatically. However, whole components of the ecosystem, like lichenized fungi, remain mostly unknown. Crustose lichens in these forests are so abundant, that they are responsible for the characteristic appearance of a “white bark forest” during the dry season....
Lambic and other barrel-aged beer styles are gaining popularity in the United States and Europe and are often treated as a premium product that can command a premium price. However, these styles can be prone to spoilage during the barrel-aging process, which represents a significant time and product commitment by...
The Lecanoromycetes is the largest class of lichenized Fungi, and one of the most species-rich classes in the
kingdom. Here we provide a multigene phylogenetic synthesis (using three ribosomal RNA-coding and two
protein-coding genes) of the Lecanoromycetes based on 642 newly generated and 3329 publicly available
sequences representing 1139 taxa,...
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The faithful replication of DNA depends on the appropriate balance of DNA precursors. From studies conducted in bacteriophage T4, models for deoxyribonucleotide biosynthesis producing pools appropriate for DNA replication have made it possible to understand more complex systems. A portion of that body of evidence supports the concept that deoxyribonucleotide...
Ectomycorrhizal fungi (EmF) form symbioses with trees. These symbioses profoundly influence forest ecology. Certain EmF form specialized profusions of hyphae, known as ectomycorrhizal fungal mats (mats) which are visible to the naked eye, alter forest soil biogeochemistry, substantially contribute to soil microbial biomass/respiration and support unique microbial communities. Piloderma and...
The Hippo signaling pathway is an evolutionarily conserved regulator of cell growth, proliferation, and apoptosis. A key function of the pathway is to regulate the subcellular distribution and activity of Yorkie in Drosophila or Yes-associated protein (YAP) and transcription co-activator with PDZ-binding motif (TAZ) in mammals. The dysregulation of the...
Improvement behaviors, specifically double loop, have been linked to successful lean implementations. Although the lean literature supports individual cognitive transformation to double loop learning as an important element of lean success, there remains a strategic methodology to achieve sustainable double loop behavior. Perceptions toward behavior and employee satisfaction have been...
Graphium sp., a eukaryotic alkanotroph, is able to oxidize small-molecular weight gaseous n-alkanes, diethyl ether and the branched ether, methyl tert butyl ether
(MTBE). However, information regarding the biochemistry of fungal-mediated alkane and ether metabolism is limited, and questions regarding the identity of alkane oxidation catalysts and the genetic underpinnings...
The fungus Nothophaeocryptopus gaeumannii is the causative agent of Swiss needle cast (SNC), a foliar disease of Douglas-fir. Disease is characterized by premature loss of foliage and reduced growth resulting from the inhibition of photosynthesis due to the occlusion of stomata by the ascocarps of N. gaeumannii. Although the disease...
The primary goal of this study is to assess the impact of a subduction component
added to the mantle wedge beneath the Oregon Cascades to the composition and fO2 of
primitive Cascade basalts. Olivine-hosted melt inclusions from compositionally diverse
basalts across the Cascade arc (~100 km) are utilized in an...
Full Text:
) images of (A) SH304
groundmass, (B) MSH04MR_11_4 ash fragment (feldspar
Li concentration of 33.7 µg/g
There are many links between exposure to environmental pollution and risks to human health. While advances in the fields of toxicology, exposure science, and environmental chemistry have shown light on many of these links, many more research challenges remain. One major challenge is how to accurately characterize the toxicity of...
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4.2. ∑PAH in each participant’s wristband (ng/g) vs. distance from each participant’s
home or
In this dissertation, multi-rate array (MRA) architecture and its synthesis are proposed
and developed. Using multi-coordinate systems (MCS), a unified theory for mapping
algorithms from their original algorithmic specifications onto multi-rate arrays is
developed.
A multi-rate array is a grid of processors in which each interconnection may have its
own...
Increased global competition is forcing organizations to increase their use of group decision making today. Computerized group decision support aids (CGDSAs) are being developed to improve the efficiency of these groups and to improve decision quality. Even though the use of CGDSAs has increased, very little research has been done...
Fault zones are potential paths for release of radioactive nuclides from radioactive-waste
repositories in granitic rock. This research considers detailed maps of en echelon fault zones
at two sites in southern Sweden, as a basis for analyses of how their internal geometry can
influence groundwater flow and transport of radioactive...
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opportunities to work with Cliff Voss,
Pierre Glynn, Anders Wörman, Shulan Xu, Ghislain de Marsily, Ove