The California Current Large Marine Ecosystem (CCLME), located on the eastern boundary of the North Pacific Ocean, is highly dynamic, with variable conditions driven by seasonal upwelling, regional oceanography, and broad scale climate patterns. In the last decade, the northeast Pacific Ocean has experienced several marine heatwaves (MHWs), prolonged periods...
Most marine fishes experience high rates of mortality during their early life history stages with far reaching consequences for adult population dynamics. Within a few weeks of hatching, relatively small changes in larval growth and mortality rates can lead to orders of magnitude variability in year-class strength. Growth and survival...
Anthropogenic carbon dioxide emissions are causing ocean acidification (OA) and ocean warming, which have negative effects on the larvae of many marine invertebrates. Oregon pink shrimp (Pandalus jordani) currently encounter upwelling events that can result in pH values as low as 7.6, and, more recently, marine heat waves that raise...
The relationship between population characteristics and population productivity is fundamental to sustainable fisheries management, but predicting productivity remains a challenging task. Proposed mechanisms driving the variability in productivity at a given population size have included environmental and demographic factors related to the age structure of the population, but the broad-scale...
The aim of this dissertation is to construct a virtual element method (VEM) for models in magneto-hydrodynamics (MHD), an area that studies the behavior and properties of electrically conducting fluids such as a plasma. MHD models are a coupling of the Maxwell’s equations for electromagnetics and models for fluid flow....
Environmental injustices, defined as inequitable access to fair, safe, and healthy environmental outcomes, are often rooted in issues of land management, policy decision making, and sovereignty. This results from a series of processes, including loss of land ownership, exclusionary and discriminatory zoning, and structural barriers to participation. Black, Indigenous, Communities...
Dynamic seascapes, which are classified using a combination of remotely sensed data and model output, represent a potential tool for dynamic ecosystem-based management in marine systems. This work explores the utility of seascape classification in the context of marine resource management by examining two case studies: one involving biological relationships...
Fisheries management that is based on quantitative assessment has commonly relied on estimating the unfished biomass of a fished stock to compare current and historical population size. Developing predictive models for this requires many years of catch and abundance data. Smaller, new, or mainly recreational fisheries may not have the...
Anomaly detection aims at detecting the points that appear different than the majority of the data, such that they are suspected to be generated from a different distribution. Anomaly detectors have been applied in many different fields, such as detecting fraudulent behaviors in bank transaction, finding broken sensors in a...
Survival of marine fishes during their early life history stage is tightly related to prey availability and predation pressure. Yet, our understanding of how individual larvae to entire assemblages are constrained by these factors is limited. We integrated biological sampling of larval fishes with fine-scale in situ imaging to relate...
The role that anthropogenic and natural habitats in estuaries play in long-term population trends for Oregon’s nearshore marine fishes is poorly understood, in part due to limited temporal sampling. One important nearshore marine group is northeastern Pacific rockfishes (Sebastes spp.), which are highly diverse, with around 96 documented species, and...
Anatomically correct biota phantom creation has suffered from three primary weaknesses: the models take considerable time to make, are limited in detail by voxel size, and are created and simulated using proprietary software. Presented are trial runs of a new biota creation pipeline, FSOPhantom, that addresses these issues by creating...
Euphausiids are recognized as essential components of marine food webs throughout the world’s oceans due to their role as prey for many species including whales, seabirds, and commercial fishes. The Kitimat Fjord System is an important fisheries area and is the only fjord habitat on the British Columbia coast that...
In Oregon, commercial fishing is estimated to contribute $544 million in income and 10,000 jobs per year to coastal communities. However not all fisheries are reaching their allocated quotas for catch. In 2017, 187.6 million pounds of non-whiting groundfish trawl quota worth $67 million was not attained, nearly three times...
Ian Angell, in the New Barbarian Manifesto, said “A ‘brave new world’ is being forced upon unsuspecting societies by advances in information technology.” It would seem then, that technological advances happen automatically and have a life of their own. There is a logic to technological advancements that is outside human...
Biological invasions and climate change represent two preeminent threats to ecological communities and biodiversity, altering the distribution and abundance of species, disrupting existing species interactions and forming unprecedented ones, and creating novel ecological communities. Many of the most successful invasive species are also ecosystem engineers, species that physically modify the...
Arctic cod (Boreogadus saida) is an ecologically significant species that plays a critical role channeling energy throughout the Arctic marine food web. Arctic cod is uniquely adapted to occupy ice edge habitats, however, a basic understanding of its larval physiology and habitat requirements is lacking due to widespread sea ice...
Understanding connectivity among exploited populations is critical to their sustainable management and long-term viability. In the marine environment, estimates of connectivity often rely on the use of genetic markers, as dispersal primarily occurs during a planktonic larval phase which is difficult to track using direct methods. In this thesis, we...
The mouth of the Columbia River (MCR) is an intersection of more than a river and ocean, but also multiple economically valuable activities including dredging to maintain a deep draft shipping channel and an active Dungeness crab (Metacarcinus magister) fishery. More than three million cubic meters of sediment are annually...
Marine systems undergo changes in community composition over time as a result of a variety of environmental and anthropogenic factors. Understanding these community changes and the factors that drive them is critical for ecosystem management of marine resources. The Gulf of Alaska (GOA) is a large marine ecosystem that includes...