ABSTRACT
Eukaryotes produce functionally diverse classes of
small RNAs (20–25 nt). These include microRNAs
(miRNAs), which act as regulatory factors during
growth and development, and short-interfering
RNAs (siRNAs), which function in several epigenetic
and post-transcriptional silencing systems. The
Arabidopsis Small RNA Project (ASRP) seeks to characterize
and functionally analyze the...
Many Gram-negative bacteria use a type III secretion system (T3SS) to establish associations with their hosts. The T3SS is a conduit for direct injection of type-III effector proteins into host cells, where they manipulate the host for the benefit of the infecting bacterium. For plant-associated pathogens, the variations in number...
The acorn woodpecker is among the most common primary cavity nesting bird of the Oregon white oak woodlands. In most of
their range, acorn woodpeckers are dependent on granaries for acorn storage, yet little is known about their selection of granary
sites. We compared habitat characteristics within 12 m of...
Many cranberry growers on the Oregon coast are well aware that good pollination is necessary for quality fruit set. Multiple
visits to the flower deliver more pollen, which can increase the percentage fruit set, number of seeds per berry, and mature
berry weight. The better a bee is at delivering...
Myosins are actin-based molecular motors that may have specialized trafficking and contractile functions in cytoskeletal compartments that lack microtubules. The postsynaptic excitatory synapse is one such specialization, yet little is known about the spatial organization of myosin motor proteins in the mature brain. We used a proteomics approach to determine...
The sagebrush ecosystem, home to numerous plant and animal species including big sagebrush (Artemisia tridentata) and the endemic greater sage-grouse (Centrocercus urophasianus), has endured fragmentation and degradation of both quantity and quality due to the cumulative and synergistic relationships between an abundance of individual disturbances including grazing, invasive annuals and...
An experimental apparatus is modified to allow measurements of the Seebeck coefficient and resistivity to be taken simultaneously. This apparatus is designed for bulk and thin film samples between temperatures of 10 K and 300 K. The apparatus is constructed such that these simultaneous measurements do not interfere with each...
Background:
Very few closed genomes of the cyanobacteria that commonly produce toxic blooms in lakes and reservoirs are available, limiting our understanding of the properties of these organisms. A new anatoxin-a-producing member of the Nostocaceae, Anabaena sp. WA102, was isolated from a freshwater lake in Washington State, USA, in 2013...
Empirical evidence indicates that environmental fluctuations have important effects on fisheries production. However, existing analytical solutions of stochastic fisheries models have been produced only under highly simplified economic and biological conditions. The main contribution of this paper is to derive under general conditions a policy function for the management of...
This study estimates a supply of juniper from private lands to determine how much of the available juniper (Juniperus occidentalis Hook) can be economically supplied at alternative prices if a market was to develop for using juniper as a biomass source. While juniper is native to central Oregon, current land...
Contributing to the worldwide biodiversity crisis are emerging infectious diseases, which can lead to extirpations and extinctions of hosts. For example, the infectious fungal pathogen Batrachochytrium dendrobatidis (Bd) is associated with worldwide amphibian population declines and extinctions. Sensitivity to Bd varies with species, season, and life stage. However, there is...
Current compression perpendicular-to-grain (C-perpendicular to) design values for wood members are based on mean stress obtained from ASTM D143 specimen. The standard ASTM test with metal on wood bearing has limited applicability in modern construction assemblies with C-perpendicular to loading scenarios. Previous work has shown that end-bearing conditions and wood-on-wood...
Descriptions of the fire regime in the Douglas-fir/western hemlock region of the Pacific Northwest traditionally have emphasized infrequent, predominantly stand-replacement fires and an associated linear pathway of stand development, where all stands proceed along a common pathway until reset by the next fire. Although such a description may apply in...
This study characterizes the production of hypogeous sporocarps (broadly referred to as truffles) by ectomycorrhizal fungi within Douglas-fir dominated forests that are considered typical of those found on the west slopes of the central Cascade mountains in Oregon. Three aspects of sporocarp production are addressed: 1) the distribution of total...
Gene regulation by small RNA pathways is ubiquitous among eukaryotes, but little is known about small RNA pathways in the Stramenopile kingdom. Phytophthora a genus of filamentous oomycetes, contains many devastating plant pathogens, causing multibillion-dollar damage to crops, ornamental plants, and natural environments. The genomes of several oomycetes including Phytophthora...
Phytophthora pathogens secrete an array of specific effector proteins to manipulate host innate immunity to promote pathogen colonization. However, little is known about the host targets of effectors and the specific mechanisms by which effectors increase susceptibility. Here we report that the soybean pathogen Phytophthora sojae uses an essential effector...
From a screen of 36 plant-associated strains of Burkholderia spp., we identified 24 strains that suppressed leaf and pseudobulb necrosis of orchid caused by B. gladioli. To gain insights into the mechanisms of disease suppression, we generated a draft genome sequence from one suppressive strain, TC3.4.2R3. The genome is an...
Understanding the genetic basis of pathogen susceptibility in various crop plants is crucial to increasing the stability of food, feed, and fuel production. Varietal differences in defence responses provide insights into the mechanisms of resistance and are a key resource for plant breeders. To explore the role of salicylic acid...