Identification of critical habitat for all life stages of commercially exploited fish populations is critical for effective management. Despite a clear need for basic biological information on juvenile rockfish life history, there have been very few efforts to describe distribution and habitat of this life stage, particularly along the Oregon...
Marine Team is a student effort to examine spatial and temporal variation of fish species within Yaquina Bay. Marine Team was developed at OSU as a seminar course with a field sampling component, to help students of marine ecology get “hands on” experience with data collection and analysis. We set...
There are two objectives of this experiment. The first is to test the effectiveness of various soil treatments on cheatgrass (Bromus tectorum) canopy cover. The second is to compare the two treatment types side by side to evaluate their relative effectiveness in treating cheatgrass. The treatments we selected are easily...
The Taskforce on Interdisciplinary Graduate Education Programs was given the mission to examine interdisciplinary graduate education programs at a range of institutions around the US, and to identify successful models that could inform the revitalization of interdisciplinary graduate education at Oregon State University. The taskforce examined programs at 29 universities...
Public agencies need information on the value of
recreational activities to assist in managing fish and
wildlife species. Over the past two decades economists have
developed and applied techniques to measure the value of such
non-marketed commodities.
The contingent valuation method (CVM) is one technique
used by economists to measure...
Phytophthora sojae is an oomycete pathogen of soybean. As a result of its economic importance, P. sojae has become a model for the study of oomycete genetics, physiology and pathology. The lack of efficient techniques for targeted mutagenesis and gene replacement have long hampered genetic studies of pathogenicity in Phytophthora species....
Structured estuarine habitats, such as salt marshes, seagrass beds, and oyster reefs, are recognized as critical nurseries for juvenile fish and crustaceans. Estuarine habitat usage by fish, including juvenile Pacific salmon Oncorhynchus spp., was characterized by sampling with a modified tow net in Willapa Bay, Washington, where 20% of the...
Structured estuarine habitats, such as salt marshes, seagrass beds, and oyster reefs, are recognized as critical nurseries for juvenile fish and crustaceans. Estuarine habitat usage by fish, including juvenile Pacific salmon Oncorhynchus spp., was characterized by sampling with a modified tow net in Willapa Bay, Washington, where 20% of the...
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Pacific
Estuary
Dumbauld, B. R., Hosack, G. R., & Bosley, K. M. (2015). Association of Juvenile
Salmon
Structured estuarine habitats, such as salt marshes, seagrass beds, and oyster reefs, are recognized as critical nurseries for juvenile fish and crustaceans. Estuarine habitat usage by fish, including juvenile Pacific salmon Oncorhynchus spp., was characterized by sampling with a modified tow net in Willapa Bay, Washington, where 20% of the...
Modulation of gene expression through RNA interference is well conserved in eukaryotes and is involved in many cellular processes. In the oomycete Phytophthora, research on the small RNA machinery and function has started to reveal potential roles in the pathogen, but much is still unknown. We examined Argonaute (AGO) homologs...
Gene regulation by small RNA pathways is ubiquitous among eukaryotes, but little is known about small RNA pathways in the Stramenopile kingdom. Phytophthora a genus of filamentous oomycetes, contains many devastating plant pathogens, causing multibillion-dollar damage to crops, ornamental plants, and natural environments. The genomes of several oomycetes including Phytophthora...
Two species of burrowing shrimp occur in high densities in US West Coast estuaries, the ghost shrimp, Neotrypaea californiensis, and the blue mud shrimp, Upogebia pugettensis. Both species of shrimp are considered ecosystem engineers as they bioturbate and irrigate extensive galleries within the sediment. While their burrows comprise a dominant...
BACKGROUND: Basic leucine zipper (bZIP) transcription factors are present exclusively in eukaryotes and constitute
one of the largest and most diverse transcription factor families. The proteins are responsible for central
developmental and physiological processes in plants, animals, and fungi, including the pathogenicity of fungal
plant pathogens. However, there is limited...
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transcription factor family in
Phytophthora sojae
Wenwu Ye1, Yang Wang1, Suomeng Dong1, BrettM Tyler2 and
BACKGROUND: Basic leucine zipper (bZIP) transcription factors are present exclusively in eukaryotes and constitute
one of the largest and most diverse transcription factor families. The proteins are responsible for central
developmental and physiological processes in plants, animals, and fungi, including the pathogenicity of fungal
plant pathogens. However, there is limited...
Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent
greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change.
Biological CH₄ production or methanogenesis is mostly performed by methanogens, a
group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂
plus...
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:2001133 (P) PMID:9371433|PMID: 8631705|PMID: 8932317|PMID:11073950 IDA methylthiol:coenzyme M
Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent
greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change.
Biological CH₄ production or methanogenesis is mostly performed by methanogens, a
group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂
plus...
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, Jane Lomax2, João C. Setubal3,4, BrettM. Tyler4,5 and
Biswarup Mukhopadhyay1,4,6*
1 Department of
Methane (CH₄) is a valuable fuel, constituting 70–95% of natural gas, and a potent
greenhouse gas. Release of CH₄ into the atmosphere contributes to climate change.
Biological CH₄ production or methanogenesis is mostly performed by methanogens, a
group of strictly anaerobic archaea. The direct substrates for methanogenesis are H₂
plus...
Dramatic increases in research in the area of microbial biofuel production coupled with
high-throughput data generation on bioenergy-related microbes has led to a deluge of
information in the scientific literature and in databases. Consolidating this information and
making it easily accessible requires a unified vocabulary. The Gene Ontology (GO) fulfills...
BACKGROUND: Basic leucine zipper (bZIP) transcription factors are present exclusively in eukaryotes and constitute one of the largest and most diverse transcription factor families. The proteins are responsible for central developmental and physiological processes in plants, animals, and fungi, including the pathogenicity of fungal plant pathogens. However, there is limited...
Understanding the genetic basis of pathogen susceptibility in various crop plants is crucial to increasing the stability of food, feed, and fuel production. Varietal differences in defence responses provide insights into the mechanisms of resistance and are a key resource for plant breeders. To explore the role of salicylic acid...