Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
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@science.oregonstate.edu, and
Luis A. Sayavedra-Soto, sayavedl@science.oregonstate.edu.
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Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
Full Text:
Address correspondence to Brett L. Mellbye, mellbyeb@science.oregonstate.edu,
or Luis A. Sayavedra-Soto
Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
The placement of ‘Pseudomonas butanovora’ in the genus Thauera was proposed previously, based on 16S rRNA gene sequence analysis, upon further studies of taxonomical characteristics. In this study, physiological characteristics and DNA–DNA reassociation data are presented and the transfer of ‘P. butanovora’ to the genus Thauera is proposed. The original...
Soluble butane monooxygenase (sBMO), a three-component di-iron monooxygenase complex
expressed by the C2–C9 alkane-utilizing bacterium Thauera butanivorans, was kinetically
characterized by measuring substrate specificities for C1–C5 alkanes and product inhibition
profiles. sBMO has high sequence homology with soluble methane monooxygenase (sMMO) and
shares a similar substrate range, including gaseous and...
Ammonia oxidation is the first and rate-limiting step in nitrification and is dominated by two distinct groups of microorganisms in soil: ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). AOA are often more abundant than AOB and dominate activity in acid soils. The mechanism of ammonia oxidation under acidic conditions has...
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. devanaterra’ and other AOA. A.
Tetranucleotide word frequency principal component analysis of AOA genomes
Ammonia oxidation is the first and rate-limiting step in nitrification and is dominated by two distinct groups of microorganisms in soil: ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). AOA are often more abundant than AOB and dominate activity in acid soils. The mechanism of ammonia oxidation under acidic conditions has...
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. Lehtovirta-Morley,a Luis A. Sayavedra-Soto,b Nicolas Gallois,c Stefan Schouten,d Lisa Y. Stein,e James I
Ammonia oxidation is the first and rate-limiting step in nitrification and is dominated by two distinct groups of microorganisms in soil: ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). AOA are often more abundant than AOB and dominate activity in acid soils. The mechanism of ammonia oxidation under acidic conditions has...
Agricultural land management, such as fertilization, liming, and tillage affects soil properties, including pH, organic matter content, nitrification rates, and the microbial community. Three different study sites were used to identify microorganisms that correlate with agricultural land use and to determine which factors regulate the relative abundance of the microbial...
When sulfur dioxide is used in commercial drying of fruits in
combination with low storage temperatures, browning and microbial spoilage
can be inhibited. However, the relationship between moisture level,
storage temperature, and sulfur dioxide content on the color of dried
fruit is not known; therefore the purpose of this research...
Inhibition of polyphenol oxidase (PPO) by sulfur dioxide (SO₂)
was studied using three different sources of PPO (banana, mushroom,
and pear). Several methods to detect PPO activity were tested due to
SO₂, interference in some of the assays. The method using
2-nitro-5-thiobenzoic acid (TNB) to react with the quinones was...
Ammonia (NH₃)-oxidizing bacteria (AOB) and thaumarchaea (AOA) co-occupy most soils, yet no short-term growth-independent method exists to determine their relative contributions to nitrification in situ. Microbial monooxygenases differ in their vulnerability to inactivation by aliphatic n-alkynes, and we found that NH₃ oxidation by the marine thaumarchaeon Nitrosopumilus maritimus was unaffected...
Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high...
This research asserts that flood risk perception of individuals living in floodplains influences their preparedness for taking actions to protect themselves from flood hazards. The results of this research are backed up by quantitative analysis of survey responses of individuals living in floodplains of Corvallis, OR in the USA. The...
Decline in cardiac pump function is a hallmark of aging where mitochondrial decay is an important underlying cause. Although certainly multifactorial in nature, both dysfunction of the machinery involved in the chemiosmotic process of energy transduction and lower capacity to maintain fatty acid-driven respiration are identified as intrinsic factors of...
Characterization of the determinants of economically important phenotypes
showing complex inheritance should lead to more effective use of genetic
resources. This study was conducted to determine the number, genome location and
effects of QTLs determining malting quality and agronomic traits in the two North
American barley quality standards. Using a...
A systematic study of highly branched isoprenoids (HBI) was carried out in
suspended particulate material (SPM) and Washington coastal sediments to determine
their origin and fate. SPM collected at 10 m depth was filtered through Nitex
membranes. C₂₅ HBI were found only in the 1.2-40 μm range over the shelf....
Many public opinion surveys indicate that patients desire an open dialogue on spirituality/religion with their physicians. What role does spirituality play in the physician/patient relationship and in what contexts do these conversations arise? What do physicians think about the appropriateness of such discussions? Because the role of spirituality in clinical...
The objectives of this research are to monitor tannin and anthocyanin changes during berry development and over several growing seasons to understand how the vintage effects wine composition. Specifically, the objectives of this research project are :
· Determine the effect of berry development on the composition of phenolics (tannins...