The integration of satellite image data with forest inventory plot data is a popular approach for mapping forest vegetation over large regions. Several methodological choices regarding spatial scale, mostly related to spatial resolution or grain, can profoundly influence forest maps developed from plot and imagery data. Yet often the consequences...
Prevention of wellbore CO₂ leakage is a critical component of any successful carbon capture, utilization, and storage program. Sporosarcina pasteurii is a bacterium that has demonstrated the potential ability to seal a compromised wellbore through the enzymatic precipitation of CaCO₃. Here we investigate the growth of S. pasteurii in a...
Extensive first-pass metabolism of ingested bisphenol A (BPA) in the gastro-intestinal tract and liver restricts blood concentrations of bioactive BPA to < 1% of total BPA in humans and non-human primates. Absorption of ingested BPA through non-metabolizing tissues of the oral cavity, recently demonstrated in dogs, could lead to the...
By inverting EarthScope long-period magnetotelluric (MT) data from the southeastern United States (SEUS), we obtain electrical conductivity images that provides key insights into the geodynamics of this region. Significantly, we resolve a highly electrically resistive block that extends to mantle depths beneath the modern Piedmont and Coastal Plain physiographic provinces....
A table containing data from random sampling plots in 87 randomly located aspen stands in northern Yellowstone, repeating measurements by Painter et al. (2014). Stands were relocated using GPS coordinates from 2012. Each stand contained one plot 2x30 m, extending from the live, dead or fallen tree nearest the GPS...
Historical forest harvesting practices were reviewed in the original Alsea Watershed Study where they found increased energy
loading to the stream and produced higher stream temperatures. This was an important early research site that led to the
development of contemporary forest management practices to protect water quality and fish habitat...
This dataset contains records of identified benthic and aquatic emergent invertebrates from pre-timber harvest, post-timber harvest, and reference (no harvest) collection sites in the Hinkle Creek watershed. A variety of fish-bearing tributaries, fishless tributaries, and mainstem creek sites were sampled. Benthic invertebrates were collected using Serber nets and emergent adults...
This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent toluene/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
This data contains results from direct numerical simulations of premixed, three-dimensional, turbulent n-heptane/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated...
This data contains results from direct numerical simulations of premixed, two-dimensional unsteady and three-dimensional, turbulent hydrogen/air flames, using the multicomponent and mixture-averaged diffusion models. In particular, this dataset contains information about diffusion flux angles and magnitudes. We performed the simulations using the finite-difference code NGA; simulation details are described completely...
These datasets document observations of pronghorn crossing structures in the Greater Yellowstone Ecosystem between 2011 and 2014. These datasets include information about the probability of pronghorn crossing the structures and their behaviors around the structures themselves (e.g., sustained vigilance, stress).
In vitro propagation is important for rapid multiplication of a wide range of nursery crops, including
red raspberries. The genetic variation of the many red raspberry cultivars makes it difficult to use one
growth medium for all. Although some cultivars grow well on Murashige and Skoog (1962) medium
(MS), others...
The Willamette Valley, bounded on the west by the Coast Range and on the east by the Cascade Mountains, is the largest river valley completely confined to Oregon. The fertile valley soils combined with a temperate, marine climate create ideal agronomic conditions for seed production. Historically, seed cropping systems in...
This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the mixture-averaged diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
This repository contains the data associated with the paper "A Hierarchy of Models for Simulating Experimental Results from a 3D Heterogeneous Porous Medium" to be published in Advances in Water Resources and currently available as a preprint on arXiv (https://arxiv.org/abs/1802.01978). These data include the information required to reproduce the results...
The content of this Technical Report is related to: Peachey, E., Doohan, D., & Koch, T. (2012). Selectivity of fomesafen based systems for preemergence weed control in cucurbit crops. Crop Protection, 40, 91-97. doi: 10.1016/j.cropro.2012.04.003.
These data set includes calibrated predictions of Depth, Velocity and Shear Stress for seven discharges (0.4 to 3.4m^3, equivalent to 0.12 Qbf to Qbf) at Oak Creek using the Flow and Sediment Transport with Morphological Evolution of Channels (FaSTMECH).
This data contains results from direct numerical simulations of three-dimensional, premixed, hydrogen/air flames, using the multicomponent diffusion model. We performed the simulations using the finite-difference code NGA; simulation details are described completely in the associated article.
This data contains large supplementary tables for the PhD dissertation of Dariia Vyshenska. Title of the Dissertation: "Identification of Cervical Cancer Key Regulators using Network Biology Approach"
The dataset contains data from two types of research.
Research #1: Identification of bacterial regulators of cervical cancer gene expression. It contains microbial...
Cytochrome B sequence data (FASTA format) from the paper “Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics”. The data was generated from a sample of 2534 unknown, field collected late-larval and juvenile rockfishes from the Pacific...
This dataset consists of vascular plant species cover estimates collected from 12, 1x1-m quadrats, nested within 15x15-m plots that excluded and were open to wild ungulate access. The wild ungulate exclusion experiment was conducted in young forest plantations (<6 years old), each randomly assigned to one of 3 silvicultural herbicide...
Koi herpesvirus (KHV) is highly pathogenic to Cyprinus carpio. KHV can also become latent in recovered fish and reactivate from latency under stressful conditions. Understanding KHV latency is important for development of strategies against herpesvirus latent infection. Our previous studies found KHV ORF6 mRNA is detectable during latent infection. In...
We propose a mathematical formulation for strategic relay network design and dispatching method selection for full truckload transportation. The proposed model minimizes total transportation and installation costs of a mixed fleet dispatching system combining relay network and point-to-point dispatching. Operational constraints such as maximum driver tour length and load circuity...
The relationship between annual growth in the catches of fishing nations and the quality of the institutions of those nations is analyzed. Catch volumes are used as a proxy for development, since economic performance indicators based on a common set of definitions do not exist. 49 major fishing nations were...
This paper reports the feasibility of using surface mount adhesives to produce low temperature microchannel arrays in a wide variety of metals. Sheet metal embossing and chemical etching processes have been used to produce sealing bosses that eliminate channel laminae, resulting in approximately 50% material savings over traditional methods. An...
OBJECTIVES: Despite documented efficacy of injury prevention programs (IPPs) to reduce sport-related lower extremity injury risk, there is evidence of a lack of widespread IPP adoption by high school coaches. This study identified factors related to non-adoption of IPPs by assessing coaches’ knowledge, attitudes, and behaviors related to prevention programs...
Pyrodinium bahamense Plate 1906 is a tropical to subtropical dinoflagellate that can cause paralytic shellfish poisoning (PSP). Based on differences in the morphology of the motile stage, as well as geographic distribution, this species was separated into two varieties, the toxic var. compressum and the non-toxic var. bahamense by Steidinger...
This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by Elsevier and can be found at: https://doi.org/10.1016/j.elspec.2012.12.004
Rubus seed has a deep double dormancy that restricts germination due to seed coat structure and chemical composition. Improved germination of diverse Rubus species required for breeding improved blackberry and raspberry cultivars is partly dependent on the seed coat structure. This study evaluated the seed coat structure of three species...
The Pacific Northwest region of the United States is known for quality production of blueberries, blackberries, and red raspberries. However, as the climate shifts to warmer, drier, and more extreme summers, growing these water intensive berry crops is becoming increasingly difficult. Furthermore, water regulations within agriculture are becoming more prevalent...
Aniba rosaeodora commonly known as rosewood is a tree species of great socio-economic value in the Amazon because it is harvested for the extraction of its essential oil, which is used in the production of cosmetics. Since rosewood is a wild species included on the Convention on International Trade in...
This study was to determine whether postharvest hydrogen sulfide (H2S) fumigation effected surface pitting development of 'Lapins' and 'Regina' cherries after cold storage, and if so, how it minimizes surface pitting injury and its relation to cell wall metabolism. Fruit were exposed to H2S gas released from an aqueous solution...
Arbuscular mycorrhizal fungi (AMF) may exert profound influences on ecosystem resilience and invasion resistance in western North American sagebrush steppe and other arid rangeland plant communities. Maintenance of plant community structure through ecological feedbacks such as facilitation of nutrient cycling and uptake by host plants, physical and chemical contributions to...
Oregon produces 99% US hazelnuts (Corylus avellana L.), occupying 3% world production. To ensure the quality and food safety of hazelnuts (inshells or kernels), industry and federal standards require freshly harvested nuts to be cleaned and dried to reach a final moisture content (MC) of inshells < 10%, MC of...
Recalcitrance to transformation makes genetic engineering of many valuable plants infeasible for practical use. Transitory host modification during transformation using transgenes offers a possible means of overcoming this obstacle. In prior work in our laboratory, the genes GA20ox7 and EBB1 were found to increase regeneration in vitro. In this project,...
Full Text:
. Scientia Horticulturae, 119(4), 362-370.
doi:10.1016/j.scienta.2008.08.034.
Lacroix, B., Jianxiong, L
Six Ca(NO3)(2) sprays at 0.3% and 0.6% from pit hardening (PH) to 1 week before harvest (1WBH) most effectively increased Ca uptake in sweet cherry (Prunus avium). Low concentration (< 0.3%) did not affect the absorption of Ca; high concentration (> 1.6%) caused burning of leaf margins. Fruit treated with...
Previous studies indicated that fertigating with nitrogen (N) was more effective than using granular N fertilizers in production of northern highbush blueberry (Vaccinium corymbosum L.). To build on these findings, four studies were conducted in western Oregon to determine whether fertigation was also an effective method for applying other nutrients,...
Escalating demand for organic blueberries has driven a significant expansion of northern highbush blueberry (NHB; Vaccinium corymbosum L.) production area. This expansion is particularly pronounced in regions of the Pacific Northwest where native soil conditions are sub-optimal for NHB, notably east of the Cascade Mountain Range of Oregon and Washington,...
To optimize storage quality of 'd'Anjou' pears (Pyrus communis L.) produced in the US Pacific Northwest regions, the recommended harvest maturity as indicated by flesh pressure is 67 to 58 N. Over-mature pears are more susceptible to superficial scald and inferior eating quality after storage. However, a significant portion of...
Polycentric networks of formal organizations and informal stakeholder groups, as opposed to centralized institutional hierarchies, can be critically important for strengthening the capacity of governance systems to adapt to unexpected social and biophysical change. Adaptive governance is one type of environmental governance characterized by the emergence of networks that stimulate...
Nursery and greenhouse products are economically important agricultural commodities for Oregon and Washington. Nursery crops including tree seedlings can be damaged or killed by soilborne plant pathogens, which can be challenging to manage because of their persistence in soil and limited options for control. Soil solarization is a pre-planting soil...
Transformation is a major bottleneck for genetic engineering and gene editing in forest tree species. This includes most genotypes of Populus and Eucalyptus, which are some of the world’s most widely-cultivated genera of plantation forest trees. To provide new tools for transformation, I tested the transcription factor-protein chimera consisting of...
Most blackberry and raspberry (Rubus) seed exhibit delayed or poor germination because of a deep double dormancy. The objective of this study was to improve seed scarification and germination protocols for the diverse Rubus species in two subgenera often used for breeding improved cultivars. We also defined the germination potential...
In recent years, many studies have focused on the molecular and biochemical mechanisms regulating the development of wine grapes. The course of grape berry development is directed by genetic design and is mediated by phytohormones, which regulate grape berry growth and development by orchestrating a complex network of interacting genes,...
An Expert Panel convened by the National Lipid Association previously developed a consensus set of recommendations for the patient-centered management of dyslipidemia in clinical medicine (part 1). These were guided by the principle that reducing elevated levels of atherogenic cholesterol (non–high-density lipoprotein cholesterol and low-density lipoprotein cholesterol) reduces the risk...
Full Text:
: Part 2’’ James A. Underberg,
DOI of original article: http://dx.doi.org/10.1016/j.jacl.2015.09.002
Bacterial blight (Xanthomonas arboricola pv. corylina) (Xac) of hazelnut (Corylus avellana L.) was described first in Oregon in 1915 and is now recognized as a damaging disease of young hazelnut trees worldwide. Stressed hazelnut trees in conditions such as planting on marginal sites, and trees between 1 and 4-years-old are...
Grapevine red blotch virus (GRBV) is a single-stranded DNA virus that causes grapevine red blotch disease (GRBD). Symptoms of GRBD include red discoloring of leaf margins and red veins on the underside of the leaves. GRBD affects the plant's metabolism and photosynthetic pathways, and disrupts carbon translocation and chlorophyll concentrations....
To survive winter, many perennial plants become endodormant, a state of suspended growth maintained even in favorable growing environments. To understand vegetative bud endodormancy, we collected paradormant, endodormant, and ecodormant axillary buds from Populus trees growing under natural conditions. Of 44,441 Populus gene models analyzed using NimbleGen microarrays, we found...
Oregon strawberries are known for their high quality, intense flavor, sweetness, and rich red color. With optimal weather conditions, including rainy and mild seasons, Oregon has one of the best strawberry farming environments. Amongst the factors for a suitable strawberry farming environment, soil significantly influences strawberry growth and quality. The...
Hop, Humulus lupulus L. is a dioecious perennial species. The female hop plant produces flowers that mature into ‘cones’ which are used as a raw material in the beer brewing process to impart bitterness, flavor, and aroma. The craft beer industry in the current global beer market continues to experience...