Systems biology is a powerful approach which considers and sheds light on all of the puzzle pieces which make up complex biological processes, and is an effective alternative to unraveling these processes using traditional molecular approaches alone. It is a natural companion approach for computational biology, which leverages the power...
Given high levels of uncertainty associated with fish stocks, predetermined access rights to the fishery may not deliver the most efficient outcome. Real time monitoring of the fishery could allow effort to be expanded or decreased in accordance with a set of performance indicators. The potential for using real time...
The primary purpose of this study was to (1) develop methods for the analysis of and (2) provide information on the chemical nature of reducing ends in typical cellulose substrates used for the study of cellulolytic enzymes. The studies were designed such that values obtained for cellulose substrates were compared...
Wheat (Triticum aestivum) is a globally traded staple food crop. The diverse and pleasing nature of wheat-derived products is a result of the complex interactions of the polymeric components from the wheat endosperm. Changes in the functionality of these polymeric components, as a result of changes in growing conditions or...
Wheat is a globally traded staple crop. Wheat is important in human diets because of its agronomic adaptability, physical characteristics, functionality for the production of leavened products and nutritional value. Two significant characteristics make wheat an important staple food-crop. First, the proteins present in wheat endosperm have attributes that enable...
The introduction of non-native species can negatively impact native species through reduced genetic fitness resulting from hybridization. The lack of spatiotemporal data of hybrids occurrences makes assessing hybridization risk difficult. Here, I developed a spatially-explicit GIS Hybridization Risk Model (HRM) between native ESA-listed Bull Trout and introduced Brook Trout by...
The efficacy of a new broad-spectrum anthelmintic, Netobimin[subscript R]
(coded SCH 32481-Schering Corporation) was evaluated in two trials
conducted during either the spring or fall grazing seasons of 1984 in
Western Oregon using 20 cross-bred yearling beef heifers and 30
cross-bred spring lambs, respectively. Percent efficacies were
determined in both...
Women’s history is often not included in K-12 classes. However, women are an essential part of American history and should be better represented in the K-12 curricula and classrooms. The purpose of this thesis is to both acknowledge that women’s history is often missing in K-12 classrooms and to provide...
Mental health among student athletes has gotten much more attention in the world of sport today. However, there has been a lack of research focusing on how the socioeconomic backgrounds of Division 1 student athletes can play a role in their mental health and their desire to seek out help...
We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
Using network architecture to describe a biological system is an effective organizational method. The utility of this approach, which generally applies to qualitative models, is enhanced by the addition of quantitative models characterizing the interactions between network nodes. A chromatophore-based signal transduction network is developed, and the highly interconnected major...
Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
Drawing on Deborah Brandt’s “literacy sponsorship,” this thesis examines ways English language learners (ELLs) in the Corvallis Multicultural Literacy Center (CMLC) act as literacy sponsors, sharing their expertise in language, textiles, and cooking, based on nine in-depth interviews with ELLs at the center. The findings of this thesis are presented...
The Hippo signaling pathway is an evolutionarily conserved regulator of cell growth, proliferation, and apoptosis. A key function of the pathway is to regulate the subcellular distribution and activity of Yorkie in Drosophila or Yes-associated protein (YAP) and transcription co-activator with PDZ-binding motif (TAZ) in mammals. The dysregulation of the...
The protagonists in the fiction of Paule Marshall, Alice Walker, and Toni
Morrison illuminate American cultural perceptions of black women and illustrate how the
creators of these characters hope to change those perceptions. I studied Paule Marshall's
Daughters, Alice Walker's Meridian and The Color Purple, and Toni Morrison's The
Bluest...
Seventy-two species of Blennocampinae in 21 genera and six tribes
are known from the Nearctic region. The adults and known larvae of
all species and genera are keyed, described and illistrated. A
definition of the subfamily, a review of previous work, a table of
host-plant associations, and a discussion of...
Maintenance of one's self and one's people in a free
society requires educational, cultural, and economic
literacy. This is fully as imperative in a democracy as the
maintenance of ignorance of slaves is required in an
oppressive society. The requisite skills needed both to
sustain one's self and become a...
Since at least the 1970s, rural areas in the western United States, as elsewhere across the country and world, have been subject to social, economic, and political forces that have resulted in novel demographic and land tenure trends when compared to previous decades. Collectively, these processes of restructuring have created...
It is necessary to evaluate and compare the characteristics of
various methods of accessing data-files in order to utilize economically
both the hardware and the software (Space and Time) supported
by the digital on-line system. The purpose of this paper is to
describe and evaluate the structure and use of...