Earth is experiencing unprecedented biodiversity loss. Amphibians are at the forefront of this biodiversity loss, with species declines estimated to be more severe than those of birds and mammals. Amphibian population declines and extinctions are driven by a number of factors including climate change, habitat destruction, contaminants and disease but...
Proceedings of Visible Possibilities: The Economics of Sustainable Fisheries, Aquaculture and Seafood Trade, the 16th Biennial Conference of the International Institute of Fisheries Economics & Trade, held July 16-20, 2012 in Dar es Salaam, Tanzania.
Anthropogenic and natural stressors often interact to affect organisms. Amphibian populations are undergoing unprecedented declines and extinctions with pesticides and emerging infectious diseases implicated as causal factors. Although these factors often co-occur, their effects on amphibians are usually examined in isolation. We hypothesized that exposure of larval and metamorphic amphibians...
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Amphibian Chytrid Fungus
Buck, J. C., Hua, J., Brogan III, W. R., Dang, T. D., Urbina, J., Bendis, R. J
Anthropogenic and natural stressors often interact to affect organisms. Amphibian populations are undergoing unprecedented declines and extinctions with pesticides and emerging infectious diseases implicated as causal factors. Although these factors often co-occur, their effects on amphibians are usually examined in isolation. We hypothesized that exposure of larval and metamorphic amphibians...
Vietnam is considered one of the most climate change-vulnerable countries due to its high dependence on agriculture and its coastal location. Increased atmospheric temperatures caused by climate change also significantly threaten one of Vietnam's most important cash crops, robusta coffee (Coffea canephora). Suitable cultivation sites of robusta, which comprises 97%...
Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, held July 11-15, 2016 at Aberdeen Exhibition and Conference Center (AECC), Aberdeen, Scotland, UK.
BACKGROUND: Within-host microbial communities and interactions among microbes are increasingly recognized as
important factors influencing host health and pathogen transmission. The microbial community associated with a
host is indeed influenced by a complex network of direct and indirect interactions between the host and the lineages
of microbes it harbors, but...
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Evolutionary Biology at Brown University.
TrangDang was a research technician in the Brisson lab. She is
BACKGROUND: Within-host microbial communities and interactions among microbes are increasingly recognized as
important factors influencing host health and pathogen transmission. The microbial community associated with a
host is indeed influenced by a complex network of direct and indirect interactions between the host and the lineages
of microbes it harbors, but...
Research on the population genetics of microbial organisms requires the use of specialized analyses designed for clonal organisms to avoid violating the assumptions of traditional population genetic models. The tools necessary for performing these analyses existed as a set of unrelated software with non-overlapping capabilities and did not cover all...
The ongoing worldwide loss of biodiversity has been described as a "biodiversity crisis," "the Anthropocene defaunation," and alternatively "an extinction spasm." More recently, many scientists have come to the conclusion that we are witnesses to Earth's sixth major mass extinction event, which has the potential to fundamentally alter basic ecological...
Soil nitrogen exists largely as organic matter, including plant liter, dead animal matter, and microbial necromass. About 90% of soil organic nitrogen is proteinaceous material that is too large for plants and microorganisms to assimilate directly. Protein depolymerization therefore plays a critical role in mobilizing this organic source of nitrogen,...
Species declines and extinctions have been recorded across taxa as evidence of an ongoing global biodiversity crisis. Amphibians are at the forefront of these declines with nearly one third of amphibian species estimated to be at risk of extinction. While many factors contribute to population declines and extinctions, the role...
Anthropogenic and natural stressors often interact to affect organisms. Amphibian populations are undergoing unprecedented declines and extinctions with pesticides and emerging infectious diseases implicated as causal factors. Although these factors often co-occur, their effects on amphibians are usually examined in isolation. We hypothesized that exposure of larval and metamorphic amphibians...
Due to threats of secondary salinization caused by increased saltwater intrusion upstream associated with climate change, this thesis examines how salinity affects the development and oviposition site selection habits of three Oregon coastal breeding amphibians, the Roughskin Newt (Taricha granulosa), the Northern Red-legged Frog (Rana aurora) and the Pacific Treefrog...
Biodiversity losses in terrestrial, freshwater, and marine systems are accelerating at a global scale and the most threatened vertebrate taxa are those associated with freshwater habitats. The causes of biodiversity losses are often complex and include synergistic effects of natural and human-induced stressors, such as habitat loss and fragmentation, urbanization,...
Coral reproduction is vital to the persistence of coral reefs. Decades of ecological studies have correlated environmental variables, such as temperature and light, to the timing of reproduction in anthozoan cnidarians, including corals and sea anemones. However, elevated temperatures associated with climate change impair reproductive success and threaten the resilience...
Understanding the impact of mitochondrial dysfunction on genome evolution has the potential not only to provide new insights on the basic evolutionary processes influencing mitochondrial and nuclear genomes, but may also reveal novel avenues for evolutionary adaptive recovery from harmful mutations. Aberrant mitochondrial activity is fundamental to the pathology of...
Mutualistic associations between corals and symbiotic microalgae of the genus Symbiodium power tropical reef ecosystems, hotspots of marine biodiversity that buffer coastlines, support tourism- and fisheries-based economies, and offer untapped potential for discovery of novel pharmaceutical compounds. However, reef ecosystems are declining at an alarming rate, in large part due...
BACKGROUND: Within-host microbial communities and interactions among microbes are increasingly recognized as important factors influencing host health and pathogen transmission. The microbial community associated with a host is indeed influenced by a complex network of direct and indirect interactions between the host and the lineages of microbes it harbors, but...
At a time when the biodiversity on Earth is being rapidly lost, new technologies and methods in genomic analysis are fortunately allowing scientists to catalog and explore the diversity that remains more efficiently and precisely. The studies in this dissertation investigate genomic diversity within the milkweed genus, Asclepias, at multiple...
Program book of Visible Possibilities: The Economics of Sustainable Fisheries, Aquaculture and Seafood Trade, the 16th Biennial Conference of the International Institute of Fisheries Economics & Trade, held July 16-20, 2012 in Dar es Salaam, Tanzania.
Using microRNA array analyses of in vitro HIV-1-infected CD4(+) cells, we find that several host microRNAs are significantly up- or downregulated around the time HIV-1 infection peaks in vitro. While microRNA-223 levels were significantly enriched in HIV-1-infected CD4(superscript+)CD8(superscript-) PBMCs, microRNA-29a/b, microRNA-155 and microRNA-21 levels were significantly reduced. Based on the...
Information about named entities (real-world objects) is usually harvested from different sources and organized as a multiple relational directed graph in Knowledge Bases (KBs). KBs play essential roles in many NLP modules including question answering, fact-checking, search engines, etc. KBs are big but still incomplete: relational information among entities is...
Most current models analyzing technology adoption are based on a function that assumes farmers make decisions upon utility maximization but ignores cultural or social factors. The traditional production systems of the Mekong Delta were based on floating rice varieties and fish harvested both from rivers and rice fields. Since 1980...
This dissertation presents a different approach to understanding how amphibians are responding to disease through ontogeny. Although numerous efforts have been conducted to understand host responses to the fungus Batrachochytrium dendrobatidis (Bd), studies have been restricted to distinct developmental stages. This dissertation provides information on host response to Bd across...
River basins provide essential services for both humans and ecosystems. Understanding the connections between ecosystems and society and their function has been at the heart of resilience studies and has become an increasing important endeavor in research and practice. In this dissertation, I define basin resilience as a river basin...
Unlike the North and the South where abundance of freshwater, the marine capture fisheries is underdeveloped, the Central Coast, especially South Central Coast with little freshwater fisheries resources, but high amount of shrimps, fishes at sea, thus local fishermen have exploited this resource for living early. Together with this living...
Animals can be naturally exposed simultaneously to multiple stressors. These include habitat changes, contaminants, diseases, invasive species, parasitism, and predation. Exposure to various combinations of biotic and abiotic stressors may induce behavioral changes that affect the way an individual interacts within its environment.Like other groups of organisms, amphibians are exposed...
This project discusses the topic of personal names and the cultures of different
peoples and their particularities, specifically in Vietnam and Denmark. The first part of
this paper gives a brief history of naming traditions (mostly relating to Western European
traditions). The second part of the paper compares two families...
This dissertation uses manipulative experiments to explore amphibian-Bd infection dynamics. Although there has been almost two decades research since the discovery of Bd, many questions still remain regarding what conditions mediate chytridiomycosis virulence. My research shows how certain host and pathogen factors can influence disease virulence. Identifying how host and...
The current rate of global biodiversity loss and extinctions is unparalleled and a major concern. Freshwater organisms are facing particularly rapid rates of biodiversity loss. Amphibians, which require an aquatic environment for part of their life cycle, are one of the most vulnerable vertebrate groups. Amphibians are experiencing population declines,...
Rapid rates of biodiversity loss have supported the notion that Earth is experiencing a sixth major extinction event. The causes of worldwide biodiversity loss are multifaceted and context dependent. One of the most prominent groups experiencing population declines and extinctions are amphibians. Several pathogens and their associated diseases are especially...
The long history of the van chai system of Vietnam began several centuries ago with their establishment mainly in the lower and middle reaches of rivers northern Vietnam and in coastal lagoons in Central Vietnam, whereas those in marine embayments, like Ha Long Bay, and in enclosed coastal areas, like...
Disease acts as a powerful selective force in natural systems, driving the rapid evolution of resistance in the host. In the face of a myriad of pathogenic challenges in natural systems, hosts must balance the energetic needs of maintenance and reproduction with costly resistance mechanisms. In this dissertation I will...
A global-scale three dimensional atmospheric transport and chemistry model was applied to simulate transpacific transport of Benzo[a]pyrene (BaP) emitted from Asia. The model results were compared with observations at six monitoring sites. The annual mean and seasonal variation of transport patterns and the contributions of different Asian source regions to...
This study employed ethnographic methodology to investigate and record the post-camp, pre-assimilation period of Laotian refugees.The primary goal was to document the special problems and experiences of the Laotian population as they attempted to adjust to new roles and expectations within mainstream North American society.Oral histories and biographical statements focused...
In supervised learning, label information can be provided at different levels of granularity. For small datasets, it is possible to acquire a label for each data instance. However, in the big-data regime, this fine granularity approach is prohibitively costly. For example, in semi-supervised learning, only a limited number of samples...