The interaction of lecithin-cholesterol acyltransferase (LCAT) with apolipoprotein A-I (apoA-I) plays a critical role in highdensity lipoprotein (HDL) maturation.Wepreviously identified a highly solvent-exposed apoA-I loop domain (Leu¹⁵⁹–Leu¹⁷⁰) in nascent HDL, the so-called “solar flare” (SF) region, and proposed that it serves as an LCAT docking site (Wu, Z., Wagner, M....
The purpose of this study was to gather participant/ campus data, and to measure morale and teaching faculty participation in institutional governance on the 107 California public community college campuses to determine if collective bargaining faculty have statistically higher or lower morale and greater or lesser participation in institutional governance....
Despite an expansive selection of available thin-layer chromatography (TLC) stationary phases, almost none are well-suited for separation of polar, ionic analytes. This work demonstrated that a highly porous stationary phase layer comprised solely of nanostructured biosilica frustules, isolated from living Pinnularia sp. diatom microalgae, improved TLC separation of the polar,...
The objectives of the current study were to 1) investigate the effect a high-docosahexaenoic acid (C22:6 n-3, DHA) microalgae product (MAL), and choline dosage in diets containing MAL, on egg production performance, physical egg quality, and nutritional parameters, and 2) determine whether choline dosage influences hepatic lipid metabolism of...
In recent years, many studies have focused on the molecular and biochemical mechanisms regulating the development of wine grapes. The course of grape berry development is directed by genetic design and is mediated by phytohormones, which regulate grape berry growth and development by orchestrating a complex network of interacting genes,...
Fusarium solani is a chronic disease that causes root rot which affects bean production worldwide. Recently, a QTL map was generated which identified several SNPs which were found to be associated with resistance to the pathogen. To be useful in a breeding program, INDELs must be identified which co-seggregate with...
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-segregate with SNP associated with QTL for
Resistance to Fusarium solani in Phaselous vulgaris
JosephA
Fusarium solani is a chronic disease that causes root rot which affects bean production worldwide. Recently, a QTL map was generated which identified several SNPs which were found to be associated with resistance to the pathogen. To be useful in a breeding program, INDELs must be identified which co-seggregate with...
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Root Rot in Snap Bean (Phaseolus vulgaris)
Josepha Schmidt
Dr. James Myers, department of horticulture
Fusarium solani is a chronic disease that causes root rot which affects bean production worldwide. Recently, a QTL map was generated which identified several SNPs which were found to be associated with resistance to the pathogen. To be useful in a breeding program, INDELs must be identified which co-seggregate with...
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Bean (Phaseolus
vulgaris)
JOSEPHA SCHMIDT
DR. JAMES MYERS, DEPARTMENT OF HORTICULTURE
JOEL DAVIS
Laboratories around the world are using the zebrafish model for biomedical research and conducting investigations using morphological, physiological, behavioral, and genomic endpoints. All assays provide information, but physiological and behavioral endpoints or phenotypes are a fast way to understand how an animal is responding to its environment. We investigate the...
Fusarium solani is a chronic disease that causes root rot which affects bean production worldwide. Recently, a QTL map was generated which identified several SNPs which were found to be associated with resistance to the pathogen. To be useful in a breeding program, INDELs must be identified which co-seggregate with...
Energy consumption is one of the primary bottlenecks to both large and small scale modern compute platforms. Reducing the operating voltage of digital circuits to voltages where the supply voltage is near or below the threshold of the transistors has recently gained attention as a method to reduce the energy...
The effects of burial by tephra (volcanic aerial ejecta) on
forest understory plants were examined northeast of Mount St. Helens,
Washington, in the area where the 18 May 1980 eruption deposited
tephra but did not destroy canopy trees. At six sites along a tephra
depth gradient from 2-15 cm, understory...
A psychophysical bisectioning experiment was performed
to evaluate equal steps within tint progressions on a high
resolution graphics terminal. In the bisectioning
experiment each respondent partitioned a tint progression
by interactively defining colors that were perceptually
equidistant between two previously defined colors. Twenty
test subjects performed the test on the...
A Land Evaluation and Site Assessment (LESA) Model was
developed for the forested soils of Lane County, in western Oregon,
based on soil potential ratings and indexes of parcel size and
adjacent and surrounding land use conflict. Lane County's economy
is heavily dependent on resource production uses of land for...
Estimates of average annual precipitation (AAP) are-needed for hydrologic modeling at
Yucca Mtn., Nevada, site of a proposed, high-level nuclear waste repository. Historical
precipitation data and station elevation were obtained for stations in southern Nevada and
southeastern California. Elevations for 1,531 additional locations were obtained from
topographic maps. The sample...
In this thesis an introduction to simulation and object oriented programming discusses the need for the creation of several classes which directly support object oriented simulation. The author places no restrictions on the type of simulations that can be conducted and simulation practitioners will find that the classes provided lay...
A study of orientation and homing in brush rabbits, Sylvilagus
bachmani ubericolor (Miller), was conducted on the E. E. Wilson
Game Management Area 7 miles north of Corvallis, Oregon, between
July 1967 and April 1969. Sixty-seven individual rabbits were fitted
with radio-transmitters and returned to the field. Home ranges were...
Programmers spend a substantial fraction of their debugging time by navigating
through source code, yet little is known about how programmers navigate. With the
continuing growth in size and complexity of software, this fraction of time is likely to
increase, which presents challenges to those seeking both to understand and...
Professional software developers do not test code adequately, even though testing tools are widely available. Until developers realize the deficiencies in their tests, inadequate testing of software seems likely to remain a major problem. To support developers writing tests, industry and researchers have proposed systems that visualize “testedness” for end-user...
We sampled vegetation, bryophytes, lichens, environment, and stand dynamics in 56 plots in the Swan Valley, Montana in 1975-1978. The data include complete inventory of trees in 375 m2 plots, with whole-plot ocular estimates of plant cover by species, transect sampling of the ground layer bryophytes and lichens with microplots,...
Tenure has often been situated as a non-negotiable tenet of modern academia, a status granted after a probationary period and extensive review, and critical for academic freedom. However, the processes by which promotion and tenure (P&T) are vetted depart in practice from the meritocratic ideal that is frequently used to...
Tenure has often been situated as a non-negotiable tenet of modern academia, a status granted after a probationary period and extensive review, and critical for academic freedom. However, the processes by which promotion and tenure (P&T) are vetted depart in practice from the meritocratic ideal that is frequently used to...
Objectives: Parental pediatric vaccine decisions are influenced by parents' health provider networks. Complementary and alternative medical providers may be key influences in the networks of those parents who do not vaccinate their children. Methods: From March to July 2013, we conducted semi-structured interviews of Oregon complementary and alternative medical providers...
Premise of research. We sought to determine the role of flowering in recovery of understory herbs from a major disturbance and to determine the effects of plant and environmental factors on flowering patterns.
Methodology. We counted flowering and nonflowering shoots in permanent plots eight to 10 times over a 30-year period for...
The authors employ a social-ecological framework to aid our understanding of the complex array of factors in the immediate and broader environment that influence adolescent sexual development. Further, sexual development is viewed as normative and critical to positive growth. The authors provide an overview of the
Two-Cities Study, a multi-stage...
Gravity observations were made with the LaCoste-Romberg underwater
gravity meter during July and August 1962 at 149 stations
in an area 10 by 40 miles (44°10' to 44°50'N latitude and 124°
07' to 124°20'W longitude) off the north-central Oregon coast
from Heceta Head to Depoe Bay. The primary purpose of...
Many pharmaceuticals have negative effects on biota when released into the environment. For example, recent work has shown that the commonly prescribed antidiabetic drug, metformin (N,N-dimethylbiguanide), has endocrine disrupting effects on fish. However, effects of metformin on aquatic primary producers are poorly known. We exposed cultured isolates of a freshwater...
Laboratory investigations of physiological processes in phytoplankton require precise control of experimental conditions. Chemostats customized to control and maintain stable pH levels (pHstats) are ideally suited for investigations of the effects of pH on phytoplankton physiology, for example in context of ocean acidification. Here we designed and constructed a simple,...
We analyzed the sedimentological characteristics and magnetic properties of cores from the three basins of Clear Lake, California, USA, to assess the depositional response to a series of land use changes that occurred in the watershed over the 20th century. Results indicate that distinct and abrupt shifts in particle size,...
The maintenance of pH homeostasis is critical for a variety of cellular metabolic processes. Although ocean acidification is likely to influence cellular metabolism and energy balance, the degree to which intracellular pH in phytoplankton differs from the external environment under varying environmental pH levels is not well characterized. While there...
Ecological impacts of climate change in the Pacific Northwest may hinge on acclimation to drier summers, highlighting the importance of plant physiological studies in forests. Evaluating dominant forest plant species under old-growth and managed forest conditions is similarly important as timber harvest might change microclimates and alter drought effects on...
The influence of pH on phytoplankton physiology is an important facet of the body of research on ocean acidification. We provide data developed during the design and implementation of a novel pHstat system capable of maintaining both static and dynamic pH environments in a laboratory setting. These data both help...
Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing
an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed
the genome of M. osmundae, focusing on genes that may provide some insight into its
mode of pathogenicity and reproductive biology.
Mixia osmundae has the smallest plant pathogenic basidiomycete...
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al. 2011
Table S2
Table S2 List of confirmed avirulence genes in different plant pathogens (with a
Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing
an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed
the genome of M. osmundae, focusing on genes that may provide some insight into its
mode of pathogenicity and reproductive biology.
Mixia osmundae has the smallest plant pathogenic basidiomycete...
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beads followed by end-repair, phosphorylation and A-tailing. Fragments were
ligated with HiSeq
Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing
an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed
the genome of M. osmundae, focusing on genes that may provide some insight into its
mode of pathogenicity and reproductive biology.
Mixia osmundae has the smallest plant pathogenic basidiomycete...
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Toome, M., Ohm, R. A., Riley, R. W., James, T. Y., Lazarus, K. L., Henrissat, B.,
Albu, S., Boyd, A
Convergent evolution is common throughout the tree of life, but the molecular mechanisms
causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple
fungal clades, but the genetic causes and consequences of their evolutionary origins are
unknown. Here we show that the potential to develop yeast forms...
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only proteins that are members of a gene family with more than one
member. Note that 3383 orthogroups
Convergent evolution is common throughout the tree of life, but the molecular mechanisms
causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple
fungal clades, but the genetic causes and consequences of their evolutionary origins are
unknown. Here we show that the potential to develop yeast forms...
Full Text:
to gene families with > 1 proteins. Orthogroups containing a single protein and not showing
Convergent evolution is common throughout the tree of life, but the molecular mechanisms
causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple
fungal clades, but the genetic causes and consequences of their evolutionary origins are
unknown. Here we show that the potential to develop yeast forms...
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the
repeated emergence of yeasts
Nagy, L. G., Ohm, R. A., Kovács, G. M., Floudas, D., Riley, R
Inherent nanomaterial characteristics, composition,
surface chemistry, and primary particle size,
are known to impact particle stability, uptake, and
toxicity. Nanocomposites challenge our ability to predict
nanoparticle reactivity in biological systems if they
are composed of materials with contrasting relative
toxicities. We hypothesized that toxicity would be
dominated by the nanoparticle...
Inherent nanomaterial characteristics, composition,
surface chemistry, and primary particle size,
are known to impact particle stability, uptake, and
toxicity. Nanocomposites challenge our ability to predict
nanoparticle reactivity in biological systems if they
are composed of materials with contrasting relative
toxicities. We hypothesized that toxicity would be
dominated by the nanoparticle...
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toxicity of engineered silver
nanoparticles
Josephine A. Bonventre • Joseph B. Pryor •
Bryan J. Harper