Plant-parasitic nematodes cause more than US $100 billion in annual agriculture loss worldwide. Thorough knowledge of their genetic diversity, and interactions with endosymbionts and environment have the potential to provide valuable insights into the basic biology of these animals, and assist future efforts aimed at management of these plant parasites....
Bacterial mutualists can modulate the biochemical capacity of animals. Highly coevolved nutritional mutualists do this by synthesizing nutrients missing from the host’s diet. Genomics tools have advanced the study of these partnerships. Here we examined the endosymbiont Xiphinematobacter (phylum Verrucomicrobia) from the dagger nematode Xiphinema americanum, a migratory ectoparasite of...
Symbiosis takes place across the domains of life. In the plant-parasitic nematode, Xiphinema americanum species complex, the bacterial endosymbiont, identified as Candidatus Xiphinematobacter americanum, lives in the gut epithelia of mature female nematodes and moves to the ovaries and uterus where it is transmitted to the eggs. This suggests that...
Here the diversity and phylogeny of the genus, Sthereus Motschulsky, 1845, and its nearest associates in the large subfamily Molytinae are explored through molecular and morphological characters. Sanger sequencing of five genes determined that Sthereus is not monophyletic. Instead, the one species in the genus Gastrotaphrus Buchanan 1936, G. barberi...
Bacterial mutualists can modulate the biochemical capacity of animals. Highly coevolved nutritional mutualists do this by synthesizing nutrients missing from the host’s diet. Genomics tools have advanced the study of these partnerships. Here we examined the endosymbiont Xiphinematobacter (phylum Verrucomicrobia) from the dagger nematode Xiphinema americanum, a migratory ectoparasite of...
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role for this endosymbiont much like
that found in distantly related endosymbionts from sap-
feeding
Bacterial mutualists can modulate the biochemical capacity of animals. Highly coevolved nutritional mutualists do this by synthesizing nutrients missing from the host’s diet. Genomics tools have advanced the study of these partnerships. Here we examined the endosymbiont Xiphinematobacter (phylum Verrucomicrobia) from the dagger nematode Xiphinema americanum, a migratory ectoparasite of...
Root-knot nematodes (Meloidogyne spp.) are one of the most important global plant pathogens. Recent innovations in molecular techniques have allowed increased study of this important pest, including the ability to investigate associated microbiomes. This study used 16S rDNA metagenomic sequencing to characterize the microbiome of Meloidogyne hapla, the northern root-knot...
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role in organismal lives
Previous studies have found endosymbionts in other nematodes, playing roles in
We report significant rates of dinitrogen (N₂) fixation in the central basins of the Gulf
of California (GC) during July–August 2005. Mixing model estimates based upon
δ¹⁵N values of particulate matter in the surface mixed layer indicate that N₂ fixation
provides as much as 35% to 48% of the phytoplankton-based...
Root-knot nematodes (Meloidogyne spp.) are one of the most important global plant pathogens. Recent innovations in molecular techniques have allowed increased study of this important pest, including the ability to investigate associated microbiomes. This study used 16S rDNA metagenomic sequencing to characterize the microbiome of Meloidogyne hapla, the northern root-knot...
Anthropogenic CO₂ emissions are shifting the global climate equilibrium, causing widespread losses in biodiversity. Anthozoan cnidarians are some of the species most vulnerable to environmental change. Environmental stress causes corals and sea anemones to expel their endosymbiotic algae, which constitute a primary source of nutrition for some Anthozoa. Carbonic anhydrase...
Anthropogenic CO₂ emissions are shifting the global climate equilibrium, causing widespread losses in biodiversity. Anthozoan cnidarians are some of the species most vulnerable to environmental change. Environmental stress causes corals and sea anemones to expel their endosymbiotic algae, which constitute a primary source of nutrition for some Anthozoa. Carbonic anhydrase...
Spotted wing drosophila, Drosophila suzukii, is a devastating invasive pest of small and stone fruits in the Americas and Europe. To better understand the population dynamics of D. suzukii, we reviewed recent work on juvenile development, adult reproduction, and seasonal variation in life history parameters including the abiotic/biotic factors that...
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Wolbachia endosymbionts can lower
fertility. Drosophila suzukii exhibit seasonal variation with
a darker
Spotted wing drosophila, Drosophila suzukii, is a devastating invasive pest of small and stone fruits in the Americas and Europe. To better understand the population dynamics of D. suzukii, we reviewed recent work on juvenile development, adult reproduction, and seasonal variation in life history parameters including the abiotic/biotic factors that...
Spotted wing drosophila, Drosophila suzukii, is a devastating invasive pest of small and stone fruits in the Americas and Europe. To better understand the population dynamics of D. suzukii, we reviewed recent work on juvenile development, adult reproduction, and seasonal variation in life history parameters including the abiotic/biotic factors that...
Xylona heveae has only been isolated as an endophyte of rubber trees. In an effort to understand the genetic basis of endophytism, we compared the genome contents of X. heveae and 36 other Ascomycota with diverse lifestyles and nutritional modes. We focused on genes that are known to be important...
Spotted wing drosophila, Drosophila suzukii, is a devastating invasive pest of small and stone fruits in the Americas and Europe. To better understand the population dynamics of D. suzukii, we reviewed recent work on juvenile development, adult reproduction, and seasonal variation in life history parameters including the abiotic/biotic factors that...
Previous studies of coral viruses have employed either microscopy or metagenomics, but few have attempted to comprehensively link the presence of a virus-like particle (VLP) to a genomic sequence. We conducted transmission electron microscopy imaging and virome analysis in tandem to characterize the most conspicuous viral types found within the...
Root-knot nematodes (Meloidogyne spp.) are one of the most important global plant pathogens. Recent innovations in molecular techniques have allowed increased study of this important pest, including the ability to investigate associated microbiomes. This study used 16S rDNA metagenomic sequencing to characterize the microbiome of Meloidogyne hapla, the northern root-knot...
MOCNESS plankton tows, sediment traps and sedimentary material are used to determine
the linkage between bio-physical forcing and foraminiferal response over a range of time
scales from the event scale to the glacial interglacial cycle. The annually averaged planktic
foraminiferal fauna of the modem California Current is a diverse community...
Cnidarians and their symbiotic dinoflagellates form a productive mutualism that shapes marine environments. In this symbiosis, dinoflagellate species from the family Symbiodiniacea reside within cnidarian host gastrodermal cells and provide the host with photosynthetically fixed carbon in exchange for host metabolites. This nutritional exchange allows both partners to thrive in...
Rhizopus microsporus is a globally ubiquitous opportunistic human and plant pathogen that is known to harbor endosymbiotic bacteria. Differences between populations of clinical and environmental R. microsporus isolates have yet to be assessed on a global scale. Whole-genome sequence data were used to explore fungal biology and to assess potential...
A year-long, bench-scale treatability study was performed to assess whether an activated sludge sequencing batch reactor could be used to treat an influent stream of 50/50 (v/v) municipal wastewater and landfill leachate to discharge standards established by the Oregon Department of Environmental Quality. One primary obstacle that was exposed during...
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Bacteroidetes Cytophagia Cytophagales Amoebophilaceae Candidatus Cardinium Cardinium endosymbiont of Encarsia
Deep-sea chemosynthetic ecosystems remain a frontier in marine science. Essential to their role in the ocean ecosystem are endosymbiotic bacteria which support larger megafauna, including the widespread symbiont-bearing Vesicomyid clams. The diversity and characteristics of these symbionts in these clams is only just beginning to be understood with technological advances...
As coral reefs continue to experience decline from human-related stressors, the countless species that depend upon them for food and shelter are likely to follow, constituting a loss of one of the most biodiverse ecosystems on the planet. Though laboratory studies of corals remain difficult, promising model organisms may hold...
Coral reefs have become vulnerable to climate change, with mass bleaching events, the loss of symbiotic algae (Symbiodiniaceae), increasing in both frequency and severity. As climate change continues to threaten the persistence and existence of coral reefs around the world, the biggest question posed for coral reefs is “can they...
As important ecological cornerstones, coral reefs face threats from a myriad of sources, such as global climate change, and importantly, disease, the latter often as a result of microbial pathogens. An understudied group of major corals, fire corals, and their even less understood microbiome present an opportunity to learn more...
Experimental manipulation of the symbiosis between cnidarians and photosynthetic dinoflagellates (Symbiodinium spp.) is crucial to advancing the understanding of the cellular mechanisms involved in host-symbiont interactions, and overall coral reef ecology. The anemone Aiptasia sp. is a model for cnidarian-dinoflagellate symbiosis, and notably it can be rendered aposymbiotic (i.e. dinoflagellate-free)...
The “9th Okazaki Biology Conference: Marine Biology II” held at the National Institute for Basic Biology (NIBB) in
Okazaki, Japan and at the Okinawa Institute of Science and Technology (OIST) in Okinawa, Japan (14–19 October
2012) bridged the fields of EvoDevo, symbiosis and coral reef ecology.
Symbiotic relationships of bacteria with higher organisms are
commonly observed in nature; however, the functional role of these
relationships is only rarely understood. This is particularly evident in
epibiotic bacterial associations in the marine environment where the bacteria
are often a diverse ensemble of microorganisms, thus complicating the
identification of...
In September of 1989, the site of an active seafloor methane vent was confirmed
approximately 20 km off the coast of Oregon in shelf waters 135 m deep. The location of
the vent had been described to Oregon State University oceanographers by a local
commercial fisherman. Preliminary observations in 1989...
Torrubiella is a genus of entomopathogenic fungi in the Clavicipitaceae
(Ascomycota). Species of the genus produce superficial perithecia on a loose mat of
hyphae that forms directly on the host. The genus is estimated to contain about 70
species. Torrubiella is hypothesized to be a close relative of Cordyceps because...
Coral reefs, found in tropical regions, are renowned for their rich biodiversity and their contributions to ecological, cultural, and economic aspects worldwide. The success of coral reefs hinges on the symbiotic partnership between corals and their dinoflagellate algae, from the family Symbiodiniaceae. The algae reside within the coral host’s gastrodermal...
Coral reefs form vast ecosystems in tropical oceans that are hotspots for biodiversity and are economically valuable. The ecological success of coral reefs is made possible by the symbiotic relationship between corals and dinoflagellate algae from the family Symbiodiniaceae. In this symbiosis, the algae are found within host gastrodermal cells...
Reef building corals are the foundation of an entire ecosystem, but they are threatened primarily by rising ocean temperatures due to climate change. Corals depend on a thermally sensitive symbiosis with intracellular dinoflagellates. As oceans warm, this symbiosis is disrupted and results in coral mortality, declining populations and degraded reefs....
The sea anemone Anthopleura elegantissima is a model organism for the study of temperate symbiosis. Anthopleura elegantissima can engage in symbiosis with two different algal symbionts: the dinoflagellate Breviolum muscatinei and the chlorophyte Elliptochloris marina. One host enzyme that has been shown to be important in cnidarian-algal symbioses is carbonic...
Complex symbioses between animal or plant hosts and their associated microbiotas can involve thousands of species and millions of genes. Because of the number of interacting partners, it is often impractical to study all organisms or genes in these host-microbe symbioses individually. Yet new phylogenetic predictive methods can use the...
Here we document introns in two Symbiodinium clades that were most likely gained following divergence of this genus
from other peridinin-containing dinoflagellate lineages. Soluble peridinin-chlorophyll a-proteins (sPCP) occur in short and
long forms in different species. Duplication and fusion of short sPCP genes produced long sPCP genes. All short and...
The modern world has presented many threats to the health and stability of ecosystems worldwide. One of the most biodiverse ecosystems, coral reefs, faces particularly strong pressures, and is already declining rapidly in complexity and area. Although the stressors that affect reefs are diverse, ranging from nutrient pollution to overfishing,...
The relative role of cospeciation and host switching in the phylogenetic history of
ascomycete foliar symbionts is addressed in the orders Leotiales and Rhytismatales, fungi
associated predominantly with Pinaceae (Coniferales). Emphasis is placed on comparing
the evolution of the sister genera Pseudotsuga and Larix (Pinaceae) with that of the
pathogenic...
Intertidal herbivores, such as isopods, help regulate and contribute to nutrient cycling and organic carbon flow through the trophic levels in estuaries and coastal ecosystems. Though much is known about the microbiomes of macrophyte leaves that serve as the primary food source for isopods, and (to a lesser extent) the...
Proteinaceous compounds are abundant forms of organic nitrogen in soil and aquatic ecosystems, and the rate of protein depolymerization, which is accomplished by a diverse range of microbial secreted peptidases, often limits nitrogen turnover in the environment. To determine if the distribution of secreted peptidases reflects the ecological and evolutionary...
Vibrio tubiashii has been linked to disease outbreaks in molluscan species, including oysters, geoducks, and clams. In particular, oyster hatcheries in the Pacific Northwest have been plagued by intermittent vibriosis since 2006. Accurate detection of vibrios, including V. tubiashii, is critical to the hatcheries in order to allow for rapid...
Cnidarians, such as anemones and corals, engage in an intracellular symbiosis with
photosynthetic dinoflagellates. Corals form both the trophic and structural foundation of
reef ecosystems. Despite their environmental importance, little is known about the
molecular basis of this symbiosis. In this dissertation we explored the cnidariandinoflagellate symbiosis from two perspectives:...
Knot Theory: In Imitation of Lewis Thomas is a collection of 14, 1200-word essays written in the style of Lewis Thomas, a physician who regularly contributed to The New England Journal of Medicine. His 1200-word column, "Notes of a Biology Watcher," ran from 1971 - 1980. The resulting compilations collectively...
Coral reef ecosystems continue to be significantly altered by disease epizootics, but why some host populations remain resistant while others succumb to outbreaks remains unknown. Research across diverse animal and plant host systems has revealed that disease severity is strongly influenced by host genetics and by environmental influences on both...
The intracellular mutualism between cnidarians and photosynthetic dinoflagellates (genus Symbiodinium) is responsible for the physical and trophic structure of diverse coral reef ecosystems. This relationship, based on nutrient exchange, allows for high productivity in tropical waters, which are generally nutrient-poor environments. Numerous environmental stressors currently threaten the health of corals,...
Over the last several decades, potato production has increased globally as it has been recognized as an important component to improving food security. However, potato production has been continuously challenged by pests. Current pest management practices rely heavily on chemical pesticides. Unfortunately, the overuse of pesticides can be harmful to...
Mycobacterium avium subspecies paratuberculosis (MAP) is the causative agent of Johne’s disease, a chronic granulomatous enteritis that plagues domestic and wild ruminants globally. During the silent stages of Johne’s disease, infected animals intermittently shed bacteria for years prior to clinical diagnosis during advanced disease stages. This strategy allows MAP to...
