Background: The owl limpet (Lottia gigantea) is an ectothermic invertebrate that inhabits
the rocky intertidal zone where it territorially defends home ranges and grazes algae growing
on the rocks. Among endothermic species, home range scales isometrically with body mass.
Hypothesis: Home range area scales isometrically (scaling exponent ∼1.0) across individuals...
Long-term data sets that quantitatively confirm basic ecological theory are rare for field
populations. Highly variable recruitment often causes wide temporal variation in population
age distribution and basic theory for adaptive sex ratio often predicts ‘sex ratio tracking’ to
match the fluctuating age distribution. Using sex-changing shrimp as a model...
Question: Are there general life-history rules for exploitation-caused extinction of mammal populations?
Mathematical methods: A population of size N faced with the added mortality of human exploitation will deterministically go extinct if its per-capita birth rate can no longer match its per-capita mortality rate as N approaches zero. We develop...
The development of several sub-fields of general economics, including those of bounded rationality, institutional economics and the evolutionary economics, has expanded the scope and intensity of the dialogue both within economics, as well as between economists and other scientists. One of the more important preoccupations of early evolutionary economics was...
The term "interaction" in evolutionary biology and ecology
describes the relationships among variables in two classes of causal
models. In the first, "interaction" refers to the influence of a
single putatively causal variable on a variable of interest. In the
second class of models, the term applies when a third...
Calow (1983) realized that differences between parasites and their free-living
relatives can be explained by the differences in nutrient richness. I
propose a model that is based on Calow's idea which identifies the relative
position of different trophic strategies (e.g. predation, grazing, parasitism and
others) based on (1) the differences...
Caenorhabditis elegans is arguably the best understood animal on the planet.
Used for over 50 years to study development, we have a vast amount of knowledge of
the inner workings of this worm. Our knowledge is incomplete, however, without
placing this organism in its evolutionary and ecological context. In this...
Forest fires contribute a significant amount of CO₂ to the atmosphere each year, and CO₂ emissions from fires are likely to increase under projected conditions of global climate change. In addition to volatilizing aboveground biomass and litter layers, forest fires have a profound effect on belowground carbon (C) pools and...
We live in an exciting time for biology. Technological advances have made data collection easier and cheaper than we could ever have imagined just 10 years ago. We can now synthesize and analyze large data sets containing genomes, transcriptomes, proteomes, and multivariate phenotypes. At the same time, society's need for...
Natural selection, in its most basic form, is described as a process in which traitsincrease or decrease in frequency depending on their fitness, and only the trait withthe highest fitness will remain in the population. Yet, populations rarely have asingle `optimal' trait. The way natural selection maintains this observed variationwithin...
Identifying the ecological and evolutionary mechanisms that determine biological diversity is a central question in ecology. In microbial ecology, phylogenetic diversity is an increasingly common and relevant means of quantifying community diversity, particularly given the challenges in defining unambiguous species units from environmental sequence data. We explore patterns of phylogenetic...
Tensegrity structures are composed of pure compressional elements that are connected via a network of pure tensional elements. The concept of tensegrity promises numerous advantages to the field of robotics. Tensegrity robots are, however, notoriously difficult to control due to their oscillatory nature and nonlinear interaction between the components. Multiagent...
Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental...
The quantity and characteristics of coarse woody debris (CWD) were examined in four distinct pine ecosystems of north-western (NW) Spain, NW Russia and the NW USA. The average CWD volume and biomass ranged from 3.76 m³ ha⁻¹, 1.55 Mg ha⁻¹ in pine plantations in NW Spain to 24.86 m3 ha⁻¹,...
"After a brief description of the setting of the Yaquina Estuary, estuarine dynamics and classification, and estuarine chemistry are presented. Then, temperature-salinity relations are reviewed using the Rattray-Officer model in simulating variable distributions reported by Callaway and Specht (1982) and Callaway (1991). Finally, the numerical models DynHyd and WASP are...
A study of the phyletic relationships among five species of
tragopans and an outgroup, the Blood Pheasant (Ithaginis cruentus), was
conducted from 1987 to 1991. Biochemical, behavioral, and external
morphologic characteristics were compared. A cladistic approach was
used to compare the behavioral, biochemical, and external morphologic
data collectively, as different...
We describe concepts, rationale, and analytical procedures for characterizing physical habitat in wadeable streams based on raw data generated from methods similar or equal to those of Kaufmann and Robison (in PB99-139156). We provide guidance for calculating measures or indices of stream size and gradient, sinuosity, substrate size and stability,...
Reintroduction programs are used to re-establish species back into their historical habitat. Most reintroduction programs have failed and few papers have evaluated factors that may be important to Pacific salmon. The 158 meter tall Cougar Dam has blocked Chinook salmon (Oncorhynchus tshawytscha) from accessing 40 kilometers of historical spawning and...
Limnanthes floccosa ssp. floccosa and L. floccosa ssp. grandiflora are two of five subspecies of Limnanthes floccosa endemic to vernal pools in southern Oregon and northern California. Three seasons of monitoring natural populations have quantified that L. floccosa ssp. grandiflora is always found growing sympatrically with L. floccosa ssp. floccosa...
Plant-parasitic nematodes cause more than US $100 billion in annual agriculture loss worldwide. Thorough knowledge of their genetic diversity, and interactions with endosymbionts and environment have the potential to provide valuable insights into the basic biology of these animals, and assist future efforts aimed at management of these plant parasites....
Measurements of physical tree crown dimensions were of subjective character in the past, even though they can be considered important for the management of many silvicultural operations, such as timing of thinning operations. In our study we investigated if and how measures of physical crown dimensions of trees differed when...
Wave Energy Converters (WECs) promise to be a viable alternative to current electrical generation methods. However, these WECs must become more efficient before wide-scale industrial use can become cost-effective. The efficiency of a WEC is primarily dependent upon its geometry and ballast configuration which are both difficult to evaluate, due...
Cooperative multiagent systems are used as solution concepts in many application domains including air traffic control, satellite communications, and extra planetary exploration. As systems become more distributed and complex, we observe three phenomena. First, these systems cannot be accurately modeled, rendering traditional model based control methods inadequate. Second, system parameters...
Western juniper (Juniperus occidentalis) encroachment has been associated with increased soil loss and reduced infiltration resulting in the loss of native herbaceous plant communities and the bird and animal species that rely on them. Hydrologically, however, change in water yield has been linked with the amount of annual precipitation a...
Quaking aspen (Populus tremuloides Michx) is a species with high phenotypic plasticity and a broad distribution that, in the last decade, has experienced climate stress-induced mortality called Sudden Aspen Decline (SAD). In order to help mitigate the effects of SAD in the future, we need a better understanding of aspen’s...
The cultivated strawberry, Fragaria Xananassa, is one of the youngest domesticated plants. Its 18th century origin via hybridization in Europe between the North American F. virginiana and the South American F. chiloensis was documented by the botanist Antoine Nicolas Duchesne. His 1766 “Natural History of Strawberries” is an extraordinary work...
Forecasts of the impacts of climate change have traditionally focused on individual species and their phenotypes, phenology, or distribution. However, shifts in species distributions and the resulting reorganization of community composition represent an important violation to the assumption of species acting in isolation. Whereas species may respond individualistically to climate...
The metabolic theory of ecology (MTE) predicts the effects of body size and temperature on metabolism through considerations of vascular distribution networks and biochemical kinetics. MTE has also been extended to characterise processes from cellular to global levels. MTE has generated both enthusiasm and controversy across a broad range of...
Many of Earth’s terrestrial large carnivore species are threatened with extinction. As a result, some of the ecological effects associated with these species may be lost. With the goal of furthering large carnivore conservation research, I conduct three global scale analyses involving these species. First, I explore prey depletion as...
Expansion of Juniperus occidentalis into the sagebrush steppe has resulted in significant changes in understory composition. A consequence of increased J. occidentalis dominance may be a depletion of the seed bank. The potential for depletion is problematic because a reduction in the amount of species available from the seed bank...
The goal of this dissertation is to examine the effectiveness of high intensity-short duration goat browsing for the control of Himalayan blackberry (Rubus armeniacus) and English ivy (Hedera helix), two widespread noxious weeds in the Pacific Northwest.
The effects of goat browsing on Himalayan blackberry vigor, as quantified by densities...
Sequence data from nrITS and cpDNA have failed to fully resolve phylogenetic relationships among Pinus species. Four low‐copy nuclear genes, developed from the screening of 73 mapped conifer anchor loci, were sequenced from 12 species representing all subsections. Individual loci do not uniformly support either the nrITS or cpDNA hypotheses...
Crested wheatgrass (Agropyron cristatum (L.) Gaertn.) is a nonindigenous perennial grass that was introduced to North America to improve the condition of degraded rangelands. It has proven to be a successful revegetation species due to its superior ease of establishment, strong competitive ability, and ability to tolerate grazing. However, crested...
Thirteen different habitat parameters were measured either quantitatively or
qualitatively around seven different Salix (willow) species on a defined reach of stream
on the southwestern slope of Steens Mountain in southeastern Oregon in order to both
broaden the current information base of riparian ecology and inform future willow
plantings aimed...
Prescribed fire can release herbaceous forages from woody plant competition thus promoting increased forage plant production, vigor, and accessibility. Prescribe fire also consumes standing litter thereby improving forage quality and palatability. Consequently, prescribed fire is commonly considered an effective tool for manipulating livestock distribution on rangelands. Efficacy of this tool...
Craterellus tubaeformis is a small to medium-sized forest mushroom that is fairly common in the Douglas-fir/western hemlock forests of the Pacific Northwestern United States and is most often associated with decayed coarse woody debris. In this study, the mycorrhizae of Craterellus tubaeformis in western Oregon is identified by DNA analysis...
Biology of Scaptomyza apicalis Hardy (Diptera: Drosophilidae) was studied in
relation to its host, meadowfoam, Limnanthes alba, a recent oil seed crop grown in the
Willamette Valley, Oregon. Populations of flies and larvae were monitored weekly over
three consecutive crop-years beginning in 1996. Yellow sticky traps gave relative
population estimates...
Reproductive tactics and migratory strategies in Pacific and Atlantic salmonines are inextricably linked through the effects of migration (or lack thereof) on age and size at maturity. In this review, we focus on the ecological and evolutionary patterns of freshwater maturation in salmonines, a key process resulting in the diversification...
An approach to understanding and managing anadromous salmon, steelhead,
and sea-run cutthroat trout (Oncorhynchus spp.) based on life history and
evolutionary adaptive capacities of species and stocks is presented. Species, stocks,
and local populations are viewed as systems that are continuously adapting to
changing environmental conditions. They have the potential...
Fires set by Native Americans were important in shaping and maintaining Willamette Valley prairie plant communities. With fire exclusion after Euro-American settlement in the 1840's, composition of the remaining prairies shifted toward shrub and tree dominance with a concomitant decline in endemic prairie plant populations. I hypothesize that by restoring...
The effects of fire severity on post-fire succession and shrub demography were quantified in shrub-steppe grasslands and subalpine forests in the Hells Canyon of the Payette National Forest, Idaho. Following the 1988 Eagle Bar Fire, species frequency, community diversity, fire adaptations, and stand ages were quantified at 12 plots in...
Since free riders in P2P network reduce the system's performance, how to maintain and encourage the nodes' cooperation is an important aspect of P2P related research. In this thesis, a P2P system is modeled based on two games: stag hunt game and snowdrift game. To relate the model to the...
North Atlantic right whales were instrumented with suction-cup mounted, time-depth recorders (TDR) during the summers of 2000 and 2001 to examine their diving and foraging behavior. Simultaneous observations of temperature, salinity and the vertical distribution of their principal prey, Calanus finmarchicus stage 5 copepodites (C5), were obtained alon
g each...
In theory, evolutionary modularity allows anatomical structures to respond differently to selective regimes, thus promoting morphological diversification. These differences can then influence the rate and direction of phenotypic evolution among structures. Here we use geometric morphometrics and phenotypic matrix statistics to compare rates of craniofacial evolution and estimate evolvability in...