The survival, growth, foliar nutrient status, ectomycorrhiza (EM) colonization,
and associative N-fixation of ponderosa pine seedlings (Pinus ponderosa var. ponderosa
Doug!. ex Laws.) were studied under different gap sizes in forest canopy during the first growing season. Seedling performance variables were assessed relative to gap size of the forest canopy...
This dissertation describes patterns in epiphytic macrolichen community composition along a nitrogen deposition gradient in the Yosemite region of the Sierra Nevada in California. This region is part of the largest federal air quality Class 1 designated air-shed in the western United States, covering the entire crest of the Sierra...
The in vitro effects of cortisol in regulating salmonid B cell functions were
investigated. B cells at three distinct stages of differentiation were examined for
cortisol sensitivity. B lymphocyte responses were examined 1) during the early stage
of the precursor, 2) during the intermediate stage of differentiation associated with
clonal...
Letters included were sent to request increased funding for the Titles I and II of the Tribally Controlled College or University Assistance Act. Another letter to the director of Indian Health Services expresses concern over funding delays to the tribes for diabetes.
Anthropogenic nitrogen (N) deposition has had substantial impacts on forests of North America. Managers seek to monitor deposition to identify areas of concern and establish critical loads, which define the amount of deposition that can be tolerated by ecosystems without causing substantial harm. We present a new monitoring approach that...
This report shows results from the developmental evaluation of phases B-D of the Lucy Student Pipeline Accelerator and Competency Enabler (L’SPACE) Program. The STEM Research Center at Oregon State University led an external evaluation for the program. This evaluation focuses on program development and success by analyzing student outcomes and...
The objective of this study was to characterize an unknown agent associated with decline in black raspberry (Rubus occidentalis) in Oregon. A virus was found consistently associated with decline symptoms of black raspberries and was named Black raspberry decline associated virus (BRDaV). Double stranded RNA extraction from BRDaV-infected black raspberry...
Many wind-power facilities in the United States have established effective monitoring programs to determine turbine-caused fatality rates of birds and bats, but estimating the number of fatalities of rare species poses special difficulties. The loss of even small numbers of individuals may adversely affect fragile populations, but typically, few (if...
Ontogenetic changes in resource use often delimit transitions between life stages. Ecological and individual factors can cause variation in the timing and consistency of these transitions, ultimately affecting community and population dynamics through changes in growth and survival. Therefore, it is important to document and understand behavioral and life history...
Research on grief has been studied for nearly a century to understand its many facets, expressiveness, and timing. In the field of counseling, many changes in theories, models, and the lenses through which loss is responded to have been accomplished. However, one constant in the U.S. culture is that definitions...
Prostate cancer is the second most common cancer in men and the fourth most common cancer overall, causing an estimated 307,000 deaths in 2012. Prostate cancer is distinct from other cancers in that there are numerous treatment options, yet very few guarantees in relation to outcome. The most common treatments...
The western purple martin (Progne subis arboricola) is a species of conservation concern throughout the Pacific Northwest. In western Oregon, the purple martin nests in three major ecosystem types: inland open-water, coastal, and upland forest. The availability of suitable breeding habitat is a major limiting factor for western purple martin...
As XML becomes more and more popular, easy-to-use and powerful XML query languages are in great need. Xing is a visual query and restructuring language for XML documents. The objective of this project is to develop a basic version of Xing, including a user-oriented XML query interface and a simple...
In this thesis I present the choice calculus, a formal language for representing variation in software and other structured artifacts. The choice calculus is intended to support variation research in a way similar to the lambda calculus in programming language research. Specifically, it provides a simple formal basis for presenting,...
The history of a software project plays a vital role in the software development process. Version control systems enable users of a software repository to look at the evolution of the source code, and see the changes that led to newer versions. Currently, version control systems provide commands that can...
XML is a very versatile data format that has been used to represent many different kinds of data, including web pages, books, business and accounting data, programming interfaces, vector graphics, system logs, and games. In a short span of time, it has gained wide acceptance as the document and data...
Topological results are applied to boundary value problems modeling nonlinear
beams and dry friction. A classical continuation theorem is used to prove
existence results for nonlinear beams. Unified proofs, where possible, are given for
all the physically relevant boundary conditions. Integration techniques and various
integral inequalities are used to prove...
Software maintenance accounts for a large portion of the software development cost, particularly the process of updating programs either to adapt for requirement change or to enhance design or efficiency. Currently, program updates are generally performed manually by programmers using text editors. This is an unreliable
method because syntax and...
Functional programming is concerned with referential transparency, that is, given a certain function and its parameter, that the result will always be the same. However, it seems that this is violated in applications involving uncertainty, such as rolling a dice. This thesis defines the background of probabilistic programming and domain-specific...
Social behavior leading to the production of common goods is prone to exploitation. One such behavior in Pseudomonas aeruginosa is quorum sensing (QS), by which the bacteria produce signals to regulate extracellular common goods. Exploitation comes in the form of cheaters which have a mutation in the central quorum sensing...
An experimental study has been made of the local natural convective
heat transfer coefficient around the circumference of a heated
horizontal cylinder oscillating vertically in water. The heat transfer
surface consisted of a 1 3/8-inch diameter cylinder with a small test
section imbedded in its surface. This enabled data to...
As a young adult, I have been able to witness first hand just how drastically social media is changing our culture and the way that we look at things. As social media continues to become more vastly used by its members who are in many different phases of life and...
Energy expenditures, perceived family well being, and energy
conservation actions were analyzed by family composition and level of
income. Data were from a three state subsample (Arizona, Colorado,
and Oregon; N = 2,633) of a larger stratified random sample of
households in the Western United States. Data were collected in...
BoGL is a programming language created for the purpose of computer science education that is specific to the domain of board games. Although there is a language grammar and an existing implementation that is currently used by students, a complete and formal language standard does not yet exist. In the...
An interdisciplinary study into the theory of design decisions has yielded a model for tracking design changes in hardware/software systems, but it still needs to be applied to a larger system to test its efficiency at tracking important data. This thesis creates an implementation of PLEXIL, a language in development...
The opportunistic pathogen Pseudomonas aeruginosa possesses two LuxR-LuxI
type quorum-sensing systems that use diffusible acyl-homoserine lactone molecules to
autoinduce and coordinate expression of multiple virulence factors. We conducted a highthroughput
screen for mutants deficient in skim-milk proteolysis—a quorum-sensing
dependent phenotype—using a nonredundant transposon-insertion library representing
most nonessential genes in P....
Research was conducted on the Keating rangelands in north-eastern Oregon to determine the food habits of deer and cattle and
similarity of their diets, and to estimate deer and cattle months of
grazing on both a quantitative and nutritional basis. Data were
collected during the winters of 1978-1979, 1979-1980 and...
Efforts to manage stocks of salmonids in Pacific Northwest stream systems are complicated by the occurrence of several runs of a species thought to represent races rearing sympatrically as juveniles. In order to collect the population statistics needed to properly manage these stocks, managers need a method of identifying juvenile...
Sexual maturation and sex differentiation comprise facets of a
common theme: reproduction. The endocrine system regulates many
of the critical physiological processes necessary for reproduction and
offers a framework within which technologies can be developed for
controlling sexual maturation and sex differentiation. The studies
described in this thesis were undertaken...
The study of the question of why Shakespeare's Hamlet delays killing
Claudius in revenge for his father's murder is examined in light of the major
critical theories from neo-classical to modern scholarship. An expanded
treatment of the works of Fredson Bowers, Eleanor Prosser, Bertram Joseph,
and Roland Frye, is provided...
The purpose of this study is to investigate the role of the
source of the external trade statistics in measuring the price
responsiveness of foreign demands and relative price competitiveness
of the major exporting countries in trade of agricultural commodities
in international markets. In particular, the papers included in this...
During Leg 168 of the Ocean Drilling Program, basalts were recovered by drilling and subsurface water was collected with a water sampling tool at Hole 1026B on the east flank of Juan de Fuca Ridge. Microorganisms were found in both types of samples. The microorganisms in the basalt appear to...
The majority of the Earth's shallow crust is composed of basalt that erupted on the seafloor and was subsequently altered by chemical exchange with seawater. One aspect of this alteration is the replacement of glass by secondary minerals, including clays. Petrographic thin sections from ODP Holes 504B and 896A revealed...
Spreadsheets are a pervasive technology throughout personal and industrial use. Often times, the user is not the author, contributing to a lack of understanding of the purpose and functionality of a spreadsheet. Furthermore, the lack of understanding is a major reason for mistakes in the use and maintenance of spreadsheets....
Correctness and efficiency are important properties of programs. However, to support maintenance and debugging, the programs should also be understandable. Program explanations also play a vital role in educational settings, enhancing the understanding of programs among students.
Proof trees provide a sound basis for generating dynamic explanations of programs. But...
The problem of supporting more advanced selective undo operations has received a lot of attention. However, selective undo is generally missing in commonly used editors. Moreover, partial selective undo, the ability of undoing just part of some edit so that other edits may be undone, is not supported at all....
Appropriate representations of variational software simplify the analysis of their properties.This thesis proposes tailored representations of two kinds variational softwares: difference files of merge commits in Git and feature models. For the former, we use the Choice Edit Model, which is based on the choice calculus, to represent changes introduced...
The code reuse problem is a common software engineering problem in scientific computing. As a prevailing programming language in many scientific fields, Fortran does not provide support to address this problem. One particular reason is that Fortran lacks the support for generic programming. By applying program-generation techniques, we developed two...
Teaching CS is a challenging task, especially for those without prior programming experience. Even for veteran educators, having to learn CS concepts while also trying to teach those same concepts is difficult; as is the case for many K-12 CS instructors. Unfortunately, there is often no formalized order with CS...
The use of board games for teaching introductory computer science is a promising recent avenue of research. The goal is to introduce computing concepts through their use in the implementations of simple games, thereby keeping students engaged through their learning process. However, there is a gap between students' algorithmic descriptions...
In an increasingly computation-driven world, algorithms and mathematical models significantly impact decision making across various fields. To foster trust and understanding, it is crucial to provide users with clear and concise explanations of the reasoning behind the results produced by computational tools, especially when recommendations appear counterintuitive. Legal frameworks in...
Pseudomonas aeruginosa is an opportunistic human pathogen that infects immunocompromised individuals such as those suffering from burns or the genetic disorder cystic fibrosis. This organism utilizes a cell-cell communication mechanism known as quorum sensing (QS) to coordinate virulence gene expression and biofilm formation. It has three interconnected QS systems, namely...
The quorum sensing regulatory pathway has been extensively studied for its impact on the virulence of Pseudomonas aeruginosa, an opportunistic pathogen that causes acute and chronic infections in immunocompromised individuals such as those suffering from the genetic disorder cystic fibrosis. Part of the quorum sensing pathway that has not been...
Partial programming is a field of study where users specify an outline or skeleton of a program, but leave various parts undefined. The undefined parts are then completed by an external mechanism to form a complete program. Adaptation-Based Programming (ABP) is a method of partial programming that utilizes techniques from...
Pseudomonas aeruginosa is a ubiquitous environmental microbe, opportunistic pathogen, and a highly social organism. P. aeruginosa utilizes a wide array of cooperative behaviors to adapt to the environmental conditions around it. These behaviors include quorum sensing (QS), a form a cell-to-cell signaling that coordinates the expression of secreted products in...