Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
Alcohol is a widely consumed, nonessential, bioactive nutrient with end-organ effects on the skeleton. Moderate levels of alcohol consumption are generally associated with increased bone mineral density (BMD), whereas higher intake levels result in reduced bone formation, bone loss, and increased risk for osteoporotic fracture. Given the negative impact of...
The South Pole ice core (SPC14), drilled in the field seasons of 2014/2015 and 2015/2016, is an intermediate length, 1,751-m ice core which preserves a 54,000-year record of past climate and atmospheric composition. The SPC14 ice core adds to the spatial grid of ice cores in Antarctica extending into the...
Developers frequently change the type of a program element and update all its references for performance, security, concurrency, library migration, or better maintainability. Despite type changes being a common program transformation, it is the least automated and the least studied. Manually performing type changes is tedious since the programmers have...
The wetting of a surface by a liquid is a crucial part of many natural and industrial processes. Despite numerous existing studies, some elements of wetting-dewetting such as contact angle variation are still poorly understood. Knowledge of contact angle behavior during the flow is necessary for modeling fluid displacements in...
Medical professionals experience higher rates of burnout than other professions due to the highly stressful nature of their environment. In 2018, 94 percent of physicians reported experiencing burnout – characterized by emotional fatigue, and feelings of depersonalization and low personal accomplishment – at some point in their careers. As emotional...
Building software systems that adapt to the changing environment is challenging. Developers cannot anticipate all the changes in advance, and even if they could, the effort required to handle such situations is too onerous for practical purposes. Self Adaptive Software (SAS) adapts itself as per changing environment. The area of...
There is growing commercial interest in the use of multiagent systems in real world applications. Some examples include inventory management in warehouses, smart homes, planetary exploration, search and rescue, air-traffic management and autonomous transportation systems. However, multiagent coordination is an extremely challenging problem. First, information relevant for coordination is often...
Fungi from the genus Chlorociboria are known for their production of the blue-green quinonic pigment xylindein. Extracted xylindein has been the subject of investigations ranging from fabric dying to use a coloring agent in paint, and shows potential as an organic semiconductor in organic photovoltaics (OPVs) and other technologies. However,...
Soil nitrogen exists largely as organic matter, including plant liter, dead animal matter, and microbial necromass. About 90% of soil organic nitrogen is proteinaceous material that is too large for plants and microorganisms to assimilate directly. Protein depolymerization therefore plays a critical role in mobilizing this organic source of nitrogen,...
Marine sediments are vast sources and reservoirs of methane, a potent greenhouse gas. Most of this methane is anaerobically oxidized by archaea before it can reach the overlying ocean, though the efficiency of this process often depends on methane fluxes and mechanisms of fluid transport. Anaerobic methanotrophic archaea, or ANME,...
Resilient water, food, and energy management strategies for an ever-growing population and changing environment depends on our understanding of water and carbon cycles from local to global scales. Fluxes of water and carbon are coupled by photosynthesis and plant transpiration cycles the largest fraction of terrestrial water from the land...
On social media platforms and on blog sites, disordered behavior as a lifestyle choice is a growing trend that supports and promotes behaviors related to self-harm and anorexia. Web content advocating self-harm and anorexia can be found easily through search engines or can be concealed in the social media sphere...
Private set intersection (PSI) allows two parties, who each hold a set of items, to compute the intersection of those sets without revealing anything about other items. Recent advances in PSI have significantly improved its performance for the case of semi-honest security, making semi-honest PSI a practical alternative to insecure...
This thesis consists of two major components. The first part is concerned with video object instance segmentation (VOS), which is the task of assigning per-pixel labels perframe of a video sequence to indicate foreground object instance membership, given the first frame ground truth mask. VOS has myriad applications, from video...
Cancer cell migration in three-dimensional extracellular matrix is a major cause of death for cancer patients. Although extensive studies have elucidated detailed mechanism of single cell 3D invasion and cell-ECM interaction, 3D collective cancer invasion is still poorly understood. 3D collective migration models have unveiled unexpected degrees of diversity and...
Anomaly detection is the task of identifying observations (points) that differ from the majority of other points, which requires some measure of difference, or distance. Many anomaly detection methods rely on “implicit distance” measures: rather than directly calculating an explicitly defined distance, these approaches quantify a point’s “abnormality” by examining...
Soils have a critical role in global carbon (C) cycling, containing one of the largest fast-cycling carbon stocks on earth. Robust representation of soil organic matter dynamics in Earth System Models is critical for future climate prediction. Current C cycling models assume that all C cycling in non-hydric (i.e. ‘upland’)...
The fact that measuring a quantum system reduces it to apparently classical behavior, eliminating the interference patterns that are a hallmark of quantumness, cries out for an explanation. That explanation has been provided by the recognition of decoherence,whereby the interference is destroyed by the very interaction that acquires information.We begin...
DNA is often described as the “blueprint for life”. In eukaryotes this information is contained within linear chromosomes of varying size and number. During cell division, the chromosomes must be faithfully segregated into each daughter cell to avoid disease and sustain life. This process is carried out by the kinetochore...
Adolescence is a developmental stage marked by crystallization in individuals’ sense of identity (Erikson, 1994; Harter, 1999). Research on positive youth development stresses the ways in which thriving trajectories during adolescence contribute to positive lifelong outcomes (Lerner & Overton, 2008; Scales, Benson, & Roehlkepartain, 2011) A symbolic interactionism perspective (Mead,...
The study of motivation in second language acquisition has been a matter of interest for many years. The research objective of this project was to conduct a study that would determine the motivation level of students of Spanish 113 during Spring term 2016 at Oregon State University, and how their...
The Linn and Benton County Gleaner network has helped the low-income families of urban and rural Oregon reclaim moral, social and cultural capital that is lost in the act of being poor in America. Rather than participating solely in government safety nets, these people reject “hand-outs” in favor of exchanging...
This dissertation serves a threefold purpose: 1. identify the principles, practices and assumptions implicated in an academic theory of social justice; 2. continue moving towards articulating a theory of social justice judgment and decision making; and 3. develop a model of social justice judgment and decision making that will assist...
Rural students have lagged behind non-rural students in matriculation into higher education, as well as in completion of four-year degrees. The current studies sought to investigate academic readiness, academic performance, and psychological differences between rural and non-rural students at Oregon State University. Rural and non-rural students were compared during spring...
Background: Prenatal care (PNC) is an important preventive health service that can influence the health of the four million women who give birth annually in the United States, and the health their infants. Despite efforts to increase women’s access to PNC services, significant disparities in PNC utilization and maternal/child health...
Invasive plants have the capacity to transform landscapes and alter ecosystem function, causing significant economic and ecological damage. These effects include displacement and reduction of native flora and fauna, altered fire regimes, modification of biotic and abiotic soil properties, as well as local, regional, and global economic impacts. With such...
Understanding the processes controlling organic matter (OM) stocks in upland soils, and the ability to management them, is crucial for maintaining soil fertility and carbon (C) storage as well as projecting change with time. OM inputs are balanced by the mineralization (oxidation) rate, with the difference determining whether the system...
In many regions of the world, a significant portion of the surface water originates in mountain headwaters where the timing and magnitude of streamflow is largely dictated by the seasonal storage of precipitation as snowpack and long-term storage as glaciers. Accumulation, persistence, and melt of snow and ice are functions...
Secure multi-party computation (MPC) is a conceptual framework in cryptography. It allows distrusting parties engage in a protocol to perform a computational task while still maintain some secure properties. Most existing approaches are required to interpret functions as a boolean circuit. With the recent state-of-art circuit garbling scheme, the performance...
The preceding empirical research examines the traditional and evolutionary research surrounding youth deviance. Deviance is routinely discussed as an adverse impact in a plethora of theories and it is imperative to further develop the knowledge of deviance as society progresses. In this report, the utilized sample group approximately (n=13583) was...
Accurate representation of soil organic matter (SOM) dynamics in Earth system models is critical for future climate prediction, yet large uncertainties exist regarding how, and to what extent, the suite of proposed relevant mechanisms should be included. To investigate how various mechanisms interact to influence SOM storage and dynamics, we...
In the last decade, the California Current Large Marine Ecosystem has experienced a trend of increased severity of upwelling-driven coastal hypoxia. This thesis strove to examine the potential upper trophic level impacts of moderate and severe hypoxia in the CCLME. Initially I conducted a literature review of Pacific harbor seal...
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Markus Horning
In the last decade, the California Current Large Marine Ecosystem (CCLME
Intimate associations with reactive metal species permanently protect soil organic matter (SOM) from microbial access and oxidation, contributing to the build-up of organic carbon (C) stocks in soils. It is increasingly recognized, however, that such associations can be reversible and that reactive metal species might even facilitate the oxidation of...
Meadowfoam (Limnanthes alba Hartw. ex Benth) seed meal (MSM), a by-product of meadowfoam oil extraction, has a plant defensive compound known as glucosinolate glucolimnanthin (GLN). Myrosinase enzymes present in soil microbes and meadowfoam seeds can convert GLN to glucosinolate breakdown products (GBPs), which demonstrate herbicidal activity and have the potential...
The putative methyltransferase LaeA is a global regulator that affects the expression of multiple secondary metabolite gene clusters in several fungi, and it can modify heterochromatin structure in Aspergillus nidulans. We have recently shown that the LaeA ortholog of Trichoderma reesei (LAE1), a fungus that is an industrial producer of...