Intraseasonal oscillations in the atmosphere-ocean system can affect weather patterns and regional ecosystems. In turn, these oscillations can be affected by climate variability, resulting in additive and/or non-linear responses of regional ecosystems to climate forcing. In the Northern California Current, a strong correlation was identified between the location of the...
The spring bloom is a key oceanic phenomenon in the Northern Gulf of Alaska (NGA), where it supports the regional ecosystem, fisheries, and CO2 sequestration. Despite its significance, mechanisms that trigger NGA blooms are still debated, largely due to a lack of sufficient data from late winter through spring. New...
Motion planning is a cornerstone of autonomous robots, enabling robots to safely and efficiently perform tasks such as package delivery, infrastructure inspection, and manipulation. However, as the field of robotics matures, robotic systems are being developed that (1) are challenging to analytically model, (2) require computationally expensive model-based controllers, and...
Elie Wiesel’s Night has become a canonical work in the genre of Holocaust literature. This thesis examines the process by which Night achieved this status. An argument will be composed using, as evidence, analysis of Elie Wiesel’s life, the broad history of Holocaust literature, and the complexities surrounding Night’s publication...
At the macroscopic scale, we have pumps that use the classical laws of physics to move liquids at a well defined rate. In the microscopic world, physicists are exploring pumps that make use of quantum mechanical behavior to build analogous pumps for quantum particles. The importance of such “quantum pumps”...
Continental shelf sediments are sinks for dissolved oxygen and sources of many major and minor nutrients required for oceanic surface primary production, resulting in a strong coupling between benthic and pelagic biogeochemical cycling. However, the influence and spatiotemporal variability of benthic remineralization on bottom-water chemistry and the supply of nutrients...
Septoria canker remains the most important disease of poplars in intensively managed forest plantations. Genetic resistance has long been considered the best way to manage for this disease. Transgenic resistance mediated by RNA silencing against pathogens and pests (HIGS: host-induced gene silencing) has shown promise in other pathosystems but has...
Deep mixing events in the ocean’s surface layer act as physical drivers of carbon export by detraining dissolved and particulate organic matter, including surface phytoplankton communities, to depth. Once removed from the sunlit surface ocean environment, phytoplankton accumulation rates are dependent on the relative contributions of loss processes, such as...
Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
Copper and iron are essential micronutrients that are required by marine primary producers for a variety of metabolic processes. Over 99% of both copper and iron are bound within organic complexes in the marine environment, however the molecular identity of many of these complexes remains unknown. The speciation of these...
Harmful algal blooms (HABs) are a problem for coastal communities, the fishing industry, and coastal organisms. Pseudo-nitzschia spp. is a regularly occurring diatom in Oregon’s coastal waters. At times, Pseudo-nitzschia spp. can facultatively produce domoic acid, a neurotoxin that can bioaccumulate in the food chain. While regular shore-based sampling provides...
Long-term, large-scale studies of meta-ecosystems provide critical information about how global change influences communities. In my dissertation, I analyzed data from studies encompassing 18 years (2006 – 2023) and over 1,000 km of coastline to investigate drivers of rocky intertidal community structure and dynamics. Specifically, I explored the roles of...
Anthropogenic induced climate change is predicted to alter distribution of existing plant populations. As plants migrate over space and time, populations often fragment and contract, affecting basic elements of population dynamics (e.g., population size, gene flow, genetic diversity, etc.). Little is known, however, how these impacts on plant species will...
The gut microbiome has been previously implemented in a number of diseases. Of note is its substantial role in metabolic syndrome, which encapsulates a group of conditions that increase the risk of cardiovascular disease, type 2 diabetes, and stroke. Understanding the causal relationships between the gut microbiome and host processes...
The growing urban development and the inadequate installation of settlements has caused environmental challenges such as landscape destruction, loss of urban tree biodiversity, therefore, the objective of this study was to identify the ecosystem services of urban trees in the 'Monumental Zone' of the city of Iquitos, in the Peruvian...
Wind power forecasting provides valuable insights for demand response, energy market operation, and plant control optimization. Probabilistic approaches—which capture uncertainty in these complex systems by representing predictions as probability distributions—represent a growing area of research in wind energy science. However, their applications for wind-based hybrid systems, particularly those focused on...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...
As global atmospheric carbon emissions continue to rise, scientists and land managers are increasingly looking to natural ecosystems to sequester and store carbon to buffer the impacts of climate change. Despite their small geographic size, many coastal ecosystems such as salt marshes, seagrass meadows, and mangroves sequester large amounts of...
Multiagent approaches are well suited to designing autonomous solutions for systems that feature complex interactions between many individuals such as in autonomous traffic systems and multi-robot exploration systems. However, creating autonomous agents that function effectively in these systems is a challenging task. In these complex environments, agents need informative reward...
This thesis examines the internet phenomenon of the “Sad Girl,” a name given to young women who identify and present themselves as inherently melancholic people online. I position the internet community of the Sad Girl, which spans across three social media platforms, Tumblr, TikTok, and Instagram, within a larger history...
We define an inner product on a vector space of adelic measures over a number field $K$. We find that the norm induced by this inner product governs weak convergence at each place of $K$. The canonical adelic measure associated to a rational map is in this vector space, and...
Pseudomonas aeruginosa is a ubiquitous environmental microbe, opportunistic pathogen, and a highly social organism. P. aeruginosa utilizes a wide array of cooperative behaviors to adapt to the environmental conditions around it. These behaviors include quorum sensing (QS), a form a cell-to-cell signaling that coordinates the expression of secreted products in...
The group of scientists that make up the Intergovernmental Panel on Climate Change found in 2007 that the warming of Earth’s climate is unequivocal and largely due to human activity. Earth’s climate has changed in the past, though the recent magnitude and pace of changes are unprecedented in human existence....
Within the Pacific Northwest, USA, root diseases of conifers are a major forest health concern. These diseases are primarily caused by basidiomycete fungi. These fungal associates play a vital role in carbon sequestration but also have a significant negative economic impact within the timber industry. As a result, research on...
Sudden Oak Death (SOD) is a forest disease caused by the oomycete pathogen Phytophthora ramorum, and infects trees in the Western United States and Europe. This generalist pathogen can infect over 130 species of plants, and causes rapid mortality in tree species in the Fagaceae. Sexual reproduction is thought to...
Conservation banking is a market-based instrument and conservation tool designed to provide compensatory mitigation for impacts to endangered species. These banks provide both ecological and economic benefits, however their ability to continue providing these benefits is threatened by climate change. The motivational factors behind the decisions to establish a conservation...
The Ni-les’tun tidal wetland restoration project in the Coquille River Estuary in southern Oregon is one of the largest and most well-studied tidal restoration projects on the Pacific Northwest coast. However, ecological data on restoration effectiveness and ecosystem change following restoration are relatively rare for projects more than a few...
Iterative algorithms are simple yet efficient in solving large-scale optimization problems in practice. With a surge in the amount of data in past decades, these methods have become increasingly important in many application areas including matrix/tensor recovery, deep learning, data mining, and reinforcement learning. To optimize or improve iterative algorithms,...
Livestock grazing is the prominent land use in Wyoming big sagebrush (Artemisia tridentata ssp. wyomingensis [Beetle & A. Young] S.L. Welsh) steppe and has been present since the late 1800’s. There have been calls to remove livestock grazing from rangelands as historic grazing practices resulted in the degradation of some...
This paper aims to increase the knowledge on establishment practices for four fast-growing species (Guazuma crinita Mart., Eucalyptus grandis x E. urophylla, Bixa orellana L., Psidium guajava L.) in areas degraded by gold mining in the Peruvian Amazon. The study was carried out in Madre de Dios region, located in...
We present a method for decentralized, multi-robot exploration in adverse environments where communication is minimal. A key conceptual feature of our method is enabling implicit coordination between robots by training a Convolutional Neural Network (CNN) as a heuristic for planning using Monte Carlo Tree Search (MCTS). Our method consists of...
Predicting the average affect of a piece of music is a task which has been of recent interest in the field of music information retrieval. We investigate the use of sentiment analysis on online social media conversations to predict a song’s valence and arousal. Using four music emotion datasets -...
In light of water scarcity and the impacts of climate change, there is an increased need to understand the interaction between land use characteristics and ecohydrologic processes in semiarid regions. Additionally, many semiarid and arid regions face various land management challenges, including woody plant encroachment, decreased snowpack, and increased stream...
In this dissertation I explore the Arms representation and activities for teaching quantum mechanics invented at Oregon State University. In the Arms representation students embody quantum states. The Arms activities are presented as an exemplar of the unique physics classroom culture of the upper-division Paradigms in Physics program. In the...
This paper was written for GEOG 323 Climatology in the Spring of 2021, and was awarded the Writing in Culture Award within the College of Earth and Atmospheric Sciences.
A fully-saturated poroelastic medium is confined by the sides of a cylinder, and the regions below and above the medium are filled with fluid at respective constant pressures. The filtration flow of fluid through the poroelastic medium and the small deformations of the medium are described by a quasi-static Biot...
Magmatic-hydrothermal ore deposits are giant geochemical anomalies in the earth’s crust most often generated by normal magmatic terrestrial processes. They are often associated with oxidized and hydrous intermediate to highly evolved magmas that have concentrated metals and have the necessary components to efficiently extract and transport them as ascending magmatic-hydrothermal...
Pesticides benefit agriculture by increasing crop yield, quality, and security. However, pesticides may inadvertently harm bees, which are valuable as pollinators. Thus, candidate pesticides in development pipelines must be assessed for toxicity to bees.
Leveraging a data set of 382 molecules with toxicity labels from honey bee exposure experiments, we...