Search Constraints
1 - 47 of 47
Number of results to display per page
Search Results
-
- Creator:
- Milliman, Lisa J.
- Abstract:
- Use of sheep to control weeds in a ryegrass-white clover pasture in which Knob Cone-Monterrey hybrid pine trees had been planted was investigated in Corvallis, Oregon during 1997-1998. Treatments consisted of an ungrazed control (C) and grazing applications to achieve 25 (L), 50 (M) or 75 (H) percent utilization of...
- Resource Type:
- Masters Thesis
- Full Text:
- Master of Science thesis of Lisa J. Milliman presented on November 10, 1999 Approved: Redacted for
-
Contaminated communities : actively involved citizens, technical assistance, and the cleanup process
- Creator:
- Gaines, Lisa J.
- Abstract:
- In what is called participatory democracy scholars and practitioners have been calling for the involvement of citizens in decisions that affect their lives. Citizens who emerge to participate in technically complex, decision-making processes find that their involvement is often minimized, disregarded, or neglected due to barriers such as specialized scientific...
- Resource Type:
- Dissertation
- Full Text:
- AN ABSTRACT OF THE DISSERTATION OF Lisa J. Gaines for the
-
- Creator:
- Ferguson, Holly J. and Neven, Lisa G.
- Resource Type:
- Conference Proceeding
- Full Text:
- CODLING MOTH: STERILITY WITHOUT IRRADIATION Holly J. Ferguson and Lisa G. Neven USDA-ARS 5230 Konnowac
-
- Creator:
- Ferguson, Holly J., Neven, Lisa G., and Lacey, Lawrence
- Resource Type:
- Conference Proceeding
- Full Text:
- POTENTIAL OF VIRAL PESTICIDES FOR CODLING MOTH Holly J. Ferguson, Lisa G. Neven, and Lawrence Lacey USDA
-
- Creator:
- Groom, Jeremiah D., Dent, Liz, Madsen, Lisa J., and Fleuret, Jennifer
- Abstract:
- A replicated before–after-control-impact study was used to test effectiveness of Oregon’s (USA) riparian protection measures at minimizing increases in summer stream temperature associated with timber harvest. Sites were located on private and state forest land. Practices on private forests require riparian management areas around fish-bearing streams; state forest’s prescriptions are...
-
- Creator:
- Groom, Jeremiah D., Dent, Liz, Madsen, Lisa J., and Fleuret, Jennifer
- Abstract:
- A replicated before–after-control-impact study was used to test effectiveness of Oregon’s (USA) riparian protection measures at minimizing increases in summer stream temperature associated with timber harvest. Sites were located on private and state forest land. Practices on private forests require riparian management areas around fish-bearing streams; state forest’s prescriptions are...
- Full Text:
- Lisa J. Madsen 22 Department of Statistics 23 Oregon State University 24 44 Kidder Hall 25
-
- Creator:
- Burton, Julia I., Ganio, Lisa M., and Puettmann, Klaus J.
- Abstract:
- Forest understory vegetation is influenced by broad-scale variation in climate, intermediate-scale variation in topography, disturbance and neighborhood interactions. However, little is known about how these multi-scale controls interact to influence observed spatial patterns. We examined relationships between the aggregated cover of understory plant species (%C[subscript U]) and multi-scale controls using...
- Resource Type:
- Article
- Full Text:
- hemlock forests of western Oregon, USA JULIA I. BURTON,� LISA M. GANIO, AND KLAUS J. PUETTMANN
-
- Creator:
- Groom, Jeremiah D., Dent, Liz, and Madsen, Lisa J.
- Abstract:
- Oregon’s forested coastal watersheds support important cold-water fisheries of salmon and steelhead (Oncorhynchus spp.) as well as forestry-dependent local economies. Riparian timber harvest restrictions in Oregon and elsewhere are designed to protect stream habitat characteristics while enabling upland timber harvest. We present an assessment of riparian leave tree rule effectiveness...
- Resource Type:
- Article
- Full Text:
- forests in the Oregon Coast Range Jeremiah D. Groom,1 Liz Dent,2 and Lisa J. Madsen3 Received 29
-
- Creator:
- Groom, Jeremiah D., Dent, Liz, Madsen, Lisa J., and Fleuret, Jennifer
- Abstract:
- A replicated before–after-control-impact study was used to test effectiveness of Oregon’s (USA) riparian protection measures at minimizing increases in summer stream temperature associated with timber harvest. Sites were located on private and state forest land. Practices on private forests require riparian management areas around fish-bearing streams; state forest’s prescriptions are...
- Resource Type:
- Article
-
- Creator:
- Olsen, Michael J., Wartman, Joseph, McAlister, Martha, Mahmoudabadi, Hamid, O'Banion, Matt S., Dunham, Lisa, and Cunningham, Keith
- Abstract:
- Monitoring unstable slopes with terrestrial laser scanning (TLS) has been proven effective. However, end users still struggle immensely with the efficient processing, analysis, and interpretation of the massive and complex TLS datasets. Two recent advances described in this paper now improve the ability to work with TLS data acquired on...
- Resource Type:
- Article
- Full Text:
- Hole Filling on Point Cloud Surface Modeling and Individual Rockfall Event Detection Olsen, M. J
-
- Creator:
- Truong, Lisa, DeNardo, Matthew A., Kundu, Soumen, Collins, Terrence J., and Tanguay, Robert L.
- Abstract:
- TAML activators promise a novel water treatment approach by efficiently catalysing peroxide-based degradation of chemicals of high concern at environmental concentrations. Green design ethics demands an exploration of TAML toxicity. Exposure to high concentrations of certain activators caused adverse effects in zebrafish. At typical TAML operational concentrations, development was not...
- Resource Type:
- Article
- Full Text:
- TAML Oxidation Catalysts Lisa Truong a, Matthew A. DeNardob, Soumen Kundub, Terrence J. Collins*b, and
-
- Creator:
- Gonzalez-Benecke, Carlos A., Zhao, Dehai, Samuelson, Lisa J., Martin, Timothy A., Leduc, Daniel J., and Jack, Steven B.
- Abstract:
- There is an increasing interest in estimating biomass for longleaf pine (Pinus palustris Mill.), an important tree species in the southeastern U.S. Most of the individual-tree allometric models available for the species are local, relying on stem diameter outside bark at breast height (DBH) and total tree height (HT), but...
- Resource Type:
- Article
- Full Text:
- Trees Carlos A. Gonzalez-Benecke 1,* ID , Dehai Zhao 2 ID , Lisa J. Samuelson 3, Timothy A. Martin 4 ID
-
- Creator:
- Marlow, Jeffrey J., Steele, Joshua A., Ziebis, Wiebke, Thurber, Andrew R., Levin, Lisa A., and Orphan, Victoria J.
- Abstract:
- The atmospheric flux of methane from the oceans is largely mitigated through microbially mediated sulphate-coupled methane oxidation, resulting in the precipitation of authigenic carbonates. Deep-sea carbonates are common around active and palaeo-methane seepage, and have primarily been viewed as passive recorders of methane oxidation; their role as active and unique...
-
- Creator:
- Marlow, Jeffrey J., Steele, Joshua A., Ziebis, Wiebke, Thurber, Andrew R., Levin, Lisa A., and Orphan, Victoria J.
- Abstract:
- The atmospheric flux of methane from the oceans is largely mitigated through microbially mediated sulphate-coupled methane oxidation, resulting in the precipitation of authigenic carbonates. Deep-sea carbonates are common around active and palaeo-methane seepage, and have primarily been viewed as passive recorders of methane oxidation; their role as active and unique...
- Full Text:
- the deep sea Jeffrey J. Marlow1, Joshua A. Steele1, Wiebke Ziebis2, Andrew R. Thurber3, Lisa A. Levin4
-
- Creator:
- Marlow, Jeffrey J., Steele, Joshua A., Ziebis, Wiebke, Thurber, Andrew R., Levin, Lisa A., and Orphan, Victoria J.
- Abstract:
- The atmospheric flux of methane from the oceans is largely mitigated through microbially mediated sulphate-coupled methane oxidation, resulting in the precipitation of authigenic carbonates. Deep-sea carbonates are common around active and palaeo-methane seepage, and have primarily been viewed as passive recorders of methane oxidation; their role as active and unique...
- Resource Type:
- Article
-
- Creator:
- Gerth, William J., Li, Judith L., Van Driesche, Richard, Sobota, Janel, Murphy, Christina A., Ganio, Lisa, and Skaugset, Arne
- Abstract:
- This dataset contains records of identified benthic and aquatic emergent invertebrates from pre-timber harvest, post-timber harvest, and reference (no harvest) collection sites in the Hinkle Creek watershed. A variety of fish-bearing tributaries, fishless tributaries, and mainstem creek sites were sampled. Benthic invertebrates were collected using Serber nets and emergent adults...
- Resource Type:
- Dataset
-
- Creator:
- Reed, Aimee, Ostertag-Hill, Claire, Jin, Ling, Miller-Morgan, Timothy J., Wu, Zhixing, Lin, Lisa, and Wang, Qing
- Abstract:
- Koi herpesvirus (KHV) is highly pathogenic to Cyprinus carpio. KHV can also become latent in recovered fish and reactivate from latency under stressful conditions. Understanding KHV latency is important for development of strategies against herpesvirus latent infection. Our previous studies found KHV ORF6 mRNA is detectable during latent infection. In...
- Resource Type:
- Article
-
- Creator:
- Butnor, John R., Samuelson, Lisa J., Stokes, Thomas A., Johnsen, Kurt H., Anderson, Peter H., and González-Benecke, Carlos A.
- Abstract:
- Aims: While lateral root mass is readily detectable with ground penetrating radar (GPR), the roots beneath a tree (below-stump) and overlapping lateral roots near large trees are problematic for surface-based antennas operated in reflection mode. We sought to determine if tree size (DBH) effects GPR root detection proximal to longleaf...
- Resource Type:
- Article
- Full Text:
- biomass John R. Butnor & Lisa J. Samuelson & Thomas A. Stokes & Kurt H. Johnsen & Peter H. Anderson
-
- Creator:
- Lin, Lisa, Chen, Sammi, Russell, Duncan S., Löhr, Christiane V., Milston-Clements, Ruth, Song, Tiffany, Miller-Morgan, Timothy J., and Jin, Ling
- Abstract:
- Koi herpesvirus (KHV) is a highly pathogenic virus of common carp and koi. KHV becomes latent in recovered koi or exposed koi without symptoms, and the latent infection can reactivate under stress conditions. KHV reactivation from latency often occurs when water temperature rapidly rises above 17 °C. Dissolved O2 is...
- Resource Type:
- Article
-
- Creator:
- Sun, Guihua, Li, Haitang, Wu, Xiwei, Covarrubias, Maricela, Scherer, Lisa, Meinking, Keith, Luk, Brian, Chomchan, Pritsana, Alluin, Jessica, Gombart, Adrian F., and Rossi, John J.
- Abstract:
- Using microRNA array analyses of in vitro HIV-1-infected CD4(+) cells, we find that several host microRNAs are significantly up- or downregulated around the time HIV-1 infection peaks in vitro. While microRNA-223 levels were significantly enriched in HIV-1-infected CD4(superscript+)CD8(superscript-) PBMCs, microRNA-29a/b, microRNA-155 and microRNA-21 levels were significantly reduced. Based on the...
- Resource Type:
- Article
- Full Text:
- microRNAs Guihua Sun1,2, Haitang Li2, Xiwei Wu3, Maricela Covarrubias3, Lisa Scherer2, Keith Meinking4
-
- Creator:
- Yuichi, Suwa, Norton, Jeanette M., Bollmann, Annette, Klotz, Martin G., Stein, Lisa Y., Laanbroek, Hendrikus J., Arp, Daniel J., Goodwin, Lynne A., Chertkov, Olga, Held, Brittany, Bruce, David, Detter, J. Chris, Detter, Janine C., Tapia, Roxanne, and Han, Cliff S.
- Abstract:
- Nitrosomonas sp. strain AL212 is an obligate chemolithotrophic ammonia-oxidizing bacterium (AOB) that was originally isolated in 1997 by Yuichi Suwa and colleagues. This organism belongs to Nitrosomonas cluster 6A, which is characterized by sensitivity to high ammonia concentrations, higher substrate affinity (lower K[subscript m]), and lower maximum growth rates than...
- Resource Type:
- Article
- Full Text:
- , Olga Chertkov, Brittany Held, David G. Klotz, Lisa Y. Stein, Hendrikus J. Laanbroek, Daniel J. Suwa
-
- Creator:
- McCallum, Susan, Graham, Julie, Jorgensen, Linzi, Rowland, Lisa J., Bassil, Nahla V., Hancock, James F., Wheeler, Edmund J., Vining, Kelly, Poland, Jesse A., Olmstead, James W., Buck, Emily, Wiedow, Claudia, Jackson, Eric, Brown, Allan, and Hackett, Christine A.
- Abstract:
- The construction of the first genetic map in autotetraploid blueberry has been made possible by the development of new SNP markers developed using genotyping by sequencing in a mapping population created from a cross between two key highbush blueberry cultivars, Draper × Jewel (Vaccinium corymbosum). The novel SNP markers were...
-
- Creator:
- McCallum, Susan, Graham, Julie, Jorgensen, Linzi, Rowland, Lisa J., Bassil, Nahla V., Hancock, James F., Wheeler, Edmund J., Vining, Kelly, Poland, Jesse A., Olmstead, James W., Buck, Emily, Wiedow, Claudia, Jackson, Eric, Brown, Allan, and Hackett, Christine A.
- Abstract:
- The construction of the first genetic map in autotetraploid blueberry has been made possible by the development of new SNP markers developed using genotyping by sequencing in a mapping population created from a cross between two key highbush blueberry cultivars, Draper × Jewel (Vaccinium corymbosum). The novel SNP markers were...
-
- Creator:
- McCallum, Susan, Graham, Julie, Jorgensen, Linzi, Rowland, Lisa J., Bassil, Nahla V., Hancock, James F., Wheeler, Edmund J., Vining, Kelly, Poland, Jesse A., Olmstead, James W., Buck, Emily, Wiedow, Claudia, Jackson, Eric, Brown, Allan, and Hackett, Christine A.
- Abstract:
- The construction of the first genetic map in autotetraploid blueberry has been made possible by the development of new SNP markers developed using genotyping by sequencing in a mapping population created from a cross between two key highbush blueberry cultivars, Draper × Jewel (Vaccinium corymbosum). The novel SNP markers were...
- Full Text:
- 4 3 C F 3 1 C F 6 8 C F 3 9 J e w e l 3 C F 6 3 D r a p e r 2 C F 2
-
- Creator:
- McCallum, Susan, Graham, Julie, Jorgensen, Linzi, Rowland, Lisa J., Bassil, Nahla V., Hancock, James F., Wheeler, Edmund J., Vining, Kelly, Poland, Jesse A., Olmstead, James W., Buck, Emily, Wiedow, Claudia, Jackson, Eric, Brown, Allan, and Hackett, Christine A.
- Abstract:
- The construction of the first genetic map in autotetraploid blueberry has been made possible by the development of new SNP markers developed using genotyping by sequencing in a mapping population created from a cross between two key highbush blueberry cultivars, Draper × Jewel (Vaccinium corymbosum). The novel SNP markers were...
- Full Text:
- McCallum . Julie Graham . Linzi Jorgensen . Lisa J. Rowland . Nahla V. Bassil . James F. Hancock . Edmund
-
Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing
- Creator:
- McCallum, Susan, Graham, Julie, Jorgensen, Linzi, Rowland, Lisa J., Bassil, Nahla V., Hancock, James F., Wheeler, Edmund J., Vining, Kelly, Poland, Jesse A., Olmstead, James W., Buck, Emily, Wiedow, Claudia, Jackson, Eric, Brown, Allan, and Hackett, Christine A.
- Abstract:
- The construction of the first genetic map in autotetraploid blueberry has been made possible by the development of new SNP markers developed using genotyping by sequencing in a mapping population created from a cross between two key highbush blueberry cultivars, Draper × Jewel (Vaccinium corymbosum). The novel SNP markers were...
- Resource Type:
- Article
-
- Creator:
- Satterthwaite, William H., Mohr, Michael S., O'Farrell, Michael R., Anderson, Eric C., Banks, Michael A., Bates, Sarah J., Bellinger, M. Renee, Borgerson, Lisa A., Crandall, Eric D., Garza, John Carlos, Kormos, Brett J., Lawson, Peter W., and Palmer-Zwahlen, Melodie L.
- Abstract:
- Managing weak stocks in mixed-stock fisheries often relies on proxies derived from data-rich indicator stocks, although there have been limited tests of the appropriateness of such proxies. For example, full cohort reconstruction of tagged Klamath River fall-run Chinook Salmon Oncorhynchus tshawytscha of northern California enables the use of detailed models...
- Resource Type:
- Article
- Full Text:
- ., Mohr, M. S., O’Farrell, M. R., Anderson, E. C., Banks, M. A., Bates, S. J., ... & Palmer-Zwahlen, M. L
-
- Creator:
- Colvin, Susan A. R., Sullivan, S. Mazeika P., Shirey, Patrick D., Colvin, Randall W., Winemiller, Kirk O., Hughes, Robert M., Fausch, Kurt D., Infante, Dana M., Olden, Julian D., Bestgen, Kevin R., Danehy, Robert J., and Eby, Lisa
- Abstract:
- Headwater streams and wetlands are integral components of watersheds that are critical for biodiversity, fisheries, ecosystem functions, natural resource-based economies, and human society and culture. These and other ecosystem services provided by intact and clean headwater streams and wetlands are critical for a sustainable future. Loss of legal protections for...
- Resource Type:
- Article
- Full Text:
- , Wildlife, and Conservation Biology, Colorado State University, Fort Collins, CO Robert J. Danehy
-
- Creator:
- Oregon State University. Extension Service, Hosty, Maureen, Engeldinger, Joan, Livesay, Maggie, Allen, N. (Nancy), Wieske, Susan, Leatherwood, Mary, White, David J., Fisher, Jessica, Albert, Lisa, Galloway, Robin, Herron, Amy, Schmidt, Mary Ann, and Bourdeau, Virginia D.
- Full Text:
- — Developing Your Habitat Education Site Inventory and Data Collection David J. White and Jessica Fisher
-
- Creator:
- Siddens, Lisbeth K., Bunde, Kristi L., Harper, Tod A., McQuistan, Tammie J., Löhr, Christiane V., Bramer, Lisa M., Waters, Katrina M., Tilton, Susan C., Krueger, Sharon K., Williams, David E., and Baird, William M.
- Abstract:
- FVB/N mice wild-type, heterozygous or null for Cyp 1b1 were used in a two-stage skin tumor study comparing PAH, benzo[a]pyrene (BaP), dibenzo[def,p]chrysene (DBC), and coal tar extract (CTE, SRM 1597a). Following 20 weeks of promotion with TPA the Cyp 1b1 null mice, initiated with DBC, exhibited reductions in incidence, multiplicity,...
- Resource Type:
- Article
- Full Text:
- Siddens, L. K., Bunde, K. L., Harper, T. A., McQuistan, T. J., Löhr, C. V., Bramer, L. M., ... & Baird, W
-
- Creator:
- Williamson, Kenneth J., Bella, David A., Beschta, Robert L., Grant, Gordon, Klingeman, Peter C., Li, Hiram W., Nelson, Peter O., Castillo, Gonzalo, Lorz, Tom, Meleason, Mark, Minear, Paula, Moret, Stephanie, Nam, Ilgi, Reiter, Maryanne, and Wieland, Lisa
- Abstract:
- A report for the Oregon Division of State Lands.
- Resource Type:
- Technical Report
- Full Text:
- Research Institute Oregon State University April1995 Authors Kenneth J. Williamson, Director
-
- Creator:
- Dalebout, Merel L., Baker, C. Scott, Steel, Debbie, Thompson, Kirsten, Robertson, Kelly M., Chivers, Susan J., Perrin, William F., Goonatilake, Manori, Anderson, R. Charles, Mead, James G., Potter, Charles W., Thompson, Lisa, Jupiter, Danielle, and Yamada, Tadasu K.
- Abstract:
- We present genetic and morphological evidence supporting the recognition of a previously synonymized species of Mesoplodon beaked whale in the tropical Indo-Pacific, Mesoplodon hotaula. Although the new species is closely-related to the rare ginkgo-toothed beaked whale M. ginkgodens, we show that these two lineages can be differentiated by maternally (mitochondrial...
- Resource Type:
- Article
-
- Creator:
- Monaco, Marcela K., Sen, Taner Z., Dharmawardhana, Palitha D., Ren, Liya, Schaeffer, Mary, Naithani, Sushma, Amarasinghe, Vindhya, Thomason, Jim, Harper, Lisa, Gardiner, Jack, Cannon, Ethalinda K.S., Lawrence, Carolyn J., Ware, Doreen, and Jaiswal, Pankaj
- Abstract:
- A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
- Resource Type:
- Article
- Full Text:
- , Vindhya Amarasinghe, Jim Thomason, Lisa Harper, Jack Gardiner, Ethalinda K.S. Cannon, Carolyn J. Lawrence
-
- Creator:
- Oregon State University. Extension Service, Hosty, Maureen, Engeldinger, Joan, Livesay, Maggie, Allen, Nancy, Wieske, Susan, Leatherwood, Mary, White, David J., Fisher, Jessica, Albert, Lisa, Galloway, Robin, Herron, Amy, Schmidt, Mary Ann, and Bourdeau, Virginia D.
- Abstract:
- Revised October 2005. Reviewed September 2013. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
- Resource Type:
- Learning Object
-
- Creator:
- Bollmann, Annette, Sedlacek, Christopher J., Norton, Jeanette, Laanbroek, Hendrikus J., Suwa, Yuichi, Stein, Lisa Y., Klotz, Martin G., Arp, Daniel J., Sayavedra-Soto, Luis, Lu, Megan, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, James, Woyke, Tanja, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam L., Huntemann, Marcel, Deshpande, Shweta, Han, Cliff, Chen, Amy, Kyrpides, Nikos, Movromatis, Konstantinos, Markowitz, Victor, Szeto, Ernest, Ivonova, Natalia, Mikhailova, Natalia, Pagani, Ioanna, Pati, Amrita, Peters, Lin, Ovchinnikova, Galina, Goodwin, Lynne A., and Lucas, Susan M.
- Abstract:
- Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high...
- Resource Type:
- Article
- Full Text:
- , Jeanette Norton2, Hendrikus J. Laanbroek3, Yuichi Suwa4, Lisa Y. Stein5, Martin G. Klotz6, Daniel Arp7
-
- Creator:
- Walsh, Thomas K., Joussen, Nicole, Tian, Kai, McGaughran, Angela, Anderson, Craig J., Qiu, Xinghui, Ahn, Seung-Joon, Bird, Lisa, Pavlidi, Nena, Vontas, John, Ryu, Jaeeun, Rasool, Akhtar, Macedo, Isabella Barony, Tay, Wee Tek, Zhang, Yongjun, Whitehouse, Mary E. A., Silvie, Pierre Jean, Downes, Sharon, Nemec, Lori, and Heckel, David G.
- Abstract:
- The cotton bollworm, Helicoverpa armigera (Hubner) is one of the most serious insect pest species to evolve resistance against many insecticides from different chemical classes. This species has evolved resistance to the pyrethroid insecticides across its native range and is becoming a truly global pest after establishing in South America...
- Resource Type:
- Article
- Full Text:
- J. Ander- son, Xinghui Qiu, Seung-Joon Ahn, Lisa Bird, Nena Pavlidi, John Vontas, Jaeeun Ryu, Akh
-
- Creator:
- Oellrich, Anika, Walls, Ramona L., Cannon, Ethalinda K. S., Cannon, Steven B., Cooper, Laurel, Gardiner, Jack, Gkoutos, Georgios V., Harper, Lisa, He, Mingze, Hoehndorf, Robert, Jaiswal, Pankaj, Kalberer, Scott R., Lloyd, John P., Meinke, David, Menda, Naama, Moore, Laura, Nelson, Rex T., Pujar, Anuradha, Lawrence, Carolyn J., and Huala, Eva
- Abstract:
- BACKGROUND: Plant phenotype datasets include many different types of data, formats, and terms from specialized vocabularies. Because these datasets were designed for different audiences, they frequently contain language and details tailored to investigators with different research objectives and backgrounds. Although phenotype comparisons across datasets have long been possible on a...
- Resource Type:
- Article
- Full Text:
- ., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., ... & Huala, E. (2015). An ontology approach
-
- Creator:
- Moran, Paul, Teel, David J., Banks, Michael A., Beacham, Terry D., Bellinger, M. Renee, Blankenship, Scott M., Candy, John R., Garza, John Carlos, Hess, Jon E., Narum, Shawn R., Seeb, Lisa W., Templin, William D., Wallace, Colin G., and Smith, Christian T.
- Abstract:
- The dynamic Quaternary geology of the Pacific Ring of Fire created substantial challenges for biogeography. Fish life history and population genetic variation were shaped by climate change, repeated formation and subsidence of ice sheets, sea-level change, volcanism and tectonics, isostatic rebound, and now human activities. It is widely recognized in...
- Resource Type:
- Article
- Full Text:
- Paul Moran, David J. Teel, Michael A. Banks, Terry D. Beacham, M. Renee Bellinger, Scott M. Blankenship
-
- Creator:
- Mora, Camilo, Wei, Chih-Lin, Rollo, Audrey, Amaro, Teresa, Baco, Amy R., Billett, David, Bopp, Laurent, Chen, Qi, Collier, Mark, Danovaro, Roberto, Gooday, Andrew J., Grupe, Benjamin M., Halloran, Paul R., Ingels, Jeroen, Jones, Daniel O. B., Levin, Lisa A., Nakano, Hideyuki, Norling, Karl, Ramirez-Llodra, Eva, Rex, Michael, Ruhl, Henry A., Smith, Craig R., Sweetman, Andrew K., Thurber, Andrew R., Tjiputra, Jerry F., Usseglio, Paolo, Watling, Les, Wu, Tongwen, and Yasuhara, Moriaki
- Abstract:
- Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
- Full Text:
- Chen1, Mark Collier8, Roberto Danovaro9, Andrew J. Gooday6, Benjamin M. Grupe10, Paul R. Halloran11,12
-
- Creator:
- Mora, Camilo, Wei, Chih-Lin, Rollo, Audrey, Amaro, Teresa, Baco, Amy R., Billett, David, Bopp, Laurent, Chen, Qi, Collier, Mark, Danovaro, Roberto, Gooday, Andrew J., Grupe, Benjamin M., Halloran, Paul R., Ingels, Jeroen, Jones, Daniel O. B., Levin, Lisa A., Nakano, Hideyuki, Norling, Karl, Ramirez-Llodra, Eva, Rex, Michael, Ruhl, Henry A., Smith, Craig R., Sweetman, Andrew K., Thurber, Andrew R., Tjiputra, Jerry F., Usseglio, Paolo, Watling, Les, Wu, Tongwen, and Yasuhara, Moriaki
- Abstract:
- Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
-
- Creator:
- Mora, Camilo, Wei, Chih-Lin, Rollo, Audrey, Amaro, Teresa, Baco, Amy R., Billett, David, Bopp, Laurent, Chen, Qi, Collier, Mark, Danovaro, Roberto, Gooday, Andrew J., Grupe, Benjamin M., Halloran, Paul R., Ingels, Jeroen, Jones, Daniel O. B., Levin, Lisa A., Nakano, Hideyuki, Norling, Karl, Ramirez-Llodra, Eva, Rex, Michael, Ruhl, Henry A., Smith, Craig R., Sweetman, Andrew K., Thurber, Andrew R., Tjiputra, Jerry F., Usseglio, Paolo, Watling, Les, Wu, Tongwen, and Yasuhara, Moriaki
- Abstract:
- Ongoing greenhouse gas emissions can modify climate processes and induce shifts in ocean temperature, pH, oxygen concentration, and productivity, which in turn could alter biological and social systems. Here, we provide a synoptic global assessment of the simultaneous changes in future ocean biogeochemical variables over marine biota and their broader...
- Resource Type:
- Article
-
- Creator:
- Voelker, Steven L., Brooks, J. Renée, Meinzer, Frederick C., Anderson, Rebecca, Bader, Martin K.-F., Battipaglia, Giovanna, Becklin, Katie M., Beerling, David, Bert, Didier, Betancourt, Julio L., Dawson, Todd E., Domec, Jean-Christophe, Guyette, Richard P., Körner, Christian, Leavitt, Steven W., Linder, Sune, Marshall, John D., Mildner, Manuel, Ogée, Jérôme, Panyushkina, Irina, Plumpton, Heather J., Pregitzer, Kurt S., Saurer, Matthias, Smith, Andrew R., Siegwolf, Rolf T. W., Stambaugh, Michael C., Talhelm, Alan F., Tardif, Jacques C., Van de Water, Peter K., Ward, Joy K., and Wingate, Lisa
- Abstract:
- Rising atmospheric [CO₂], cₐ, is expected to affect stomatal regulation of leaf gas-exchange of woody plants, thus influencing energy fluxes as well as carbon (C), water, and nutrient cycling of forests. Researchers have proposed various strategies for stomatal regulation of leaf gas-exchange that include maintaining a constant leaf internal [CO₂],...
- Resource Type:
- Article
- Full Text:
- . VOELKER 1 , J . R EN �EE BROOKS 2 , FREDER ICK C . ME INZER 3 , REBECCA ANDERSON4 , MART IN K . - F
-
- Creator:
- Ochieng, Josiah, Nangami, Gladys N., Ogunkua, Olugbemiga, Miousse, Isabelle R., Koturbash, Igor, Odero-Marah, Valerie, McCawley, Lisa J., Nangia-Makker, Pratima, Ahmed, Nuzhat, Luqmani, Yunus, Chen, Zhenbang, Papagerakis, Silvana, Wolf, Gregory T., Dong, Chenfang, Zhou, Binhua P., Brown, Dustin G., Colacci, Annamaria, Hamid, Roslida A., Mondello, Chiara, Raju, Jayadev, Ryan, Elizabeth P., Woodrick, Jordan, Scovassi, A. Ivana, Singh, Neetu, Vaccari, Monica, Roy, Rabindra, Forte, Stefano, Memeo, Lorenzo, Salem, Hosni K., Amedei, Amedeo, Al-Temaimi, Rabeah, Al-Mulla, Fahd, Bisson, William H., and Eltom, Sakina E.
- Abstract:
- The purpose of this review is to stimulate new ideas regarding low-dose environmental mixtures and carcinogens and their potential to promote invasion and metastasis. Whereas a number of chapters in this review are devoted to the role of lowdose environmental mixtures and carcinogens in the promotion of invasion and metastasis...
- Resource Type:
- Article
- Full Text:
- , J., Nangami, G. N., Ogunkua, O., Miousse, I. R., Koturbash, I., Odero-Marah, V., ... & Eltom, S. E
-
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
- Creator:
- Harper, Lisa, Campbell, Jacqueline, Cannon, Steve, Carson, James, Condon, Bradford, Cooper, Laurel, Dunn, Nathan, Elsik, Christine G., Farmer, Andrew, Ficklin, Stephen P., Grant, David, Grau, Emily, Cannon, Ethalinda K. S., Herndon, Nic, Hu, Zhi-Liang, Humann, Jodi, Jaiswal, Pankaj, Jonquet, Clement, Laporte, Marie-Angelique, Larmande, Pierre, Lazo, Gerard, McCarthy, Fiona, Menda, Naama, Jung, Sook, Mungall, Christopher J., Munoz-Torres, Monica C., Naithani, Sushma, Nelson, Rex, Nesdill, Daureen, Park, Carissa, Reecy, James, Reiser, Leonore, Sanderson, Lacey-Anne, Sen, Taner Z., Poelchau, Monica, Staton, Margaret, Subramaniam, Sabarinath, Tello-Ruiz, Marcela Karey, Unda, Victor, Unni, Deepak, Wang, Liya, Ware, Doreen, Wegrzyn, Jill, Williams, Jason, Woodhouse, Margaret, Walls, Ramona, Yu, Jing, Main, Doreen, Andorf, Carson, Arnaud, Elizabeth, Berardini, Tanya Z., and Birkett, Clayton
- Abstract:
- The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require datamanagement plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated...
- Resource Type:
- Article
- Full Text:
- agriculture Lisa Harper1,*,†, Jacqueline Campbell2,†, Ethalinda K.S. Cannon1,2,†, Sook Jung3,†, Monica
-
- Creator:
- Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
- Abstract:
- The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
- Resource Type:
- Article
- Full Text:
- with the Gene Ontology Consortium. Nucleic Acids Res., 38, D204–D210. 5. Day-Richter,J., Harris,M.A
-
- Creator:
- Goodson, William H., III, Lowe, Leroy, Carpenter, David O., Gilbertson, Michael, Manaf Ali, Abdul, Lopez de Cerain Salsamendi, Adela, Lasfar, Ahmed, Carnero, Amancio, Azqueta, Amaya, Amedei, Amedeo, Charles, Amelia K., Collins, Andrew R., Ward, Andrew, Salzberg, Anna C., Colacci, Annamaria, Olsen, Ann-Karin, Berg, Arthur, Barclay, Barry J., Zhou, Binhua P., Blanco-Aparicio, Carmen, Baglole, Carolyn J., Dong, Chenfang, Mondello, Chiara, Hsu, Chia-Wen, Naus, Christian C., Yedjou, Clement, Curran, Colleen S., Laird, Dale W., Koch, Daniel C., Carlin, Danielle J., Felsher, Dean W., Roy, Debasish, Brown, Dustin G., Ratovitski, Edward, Ryan, Elizabeth P., Corsini, Emanuela, Rojas, Emilio, Moon, Eun-Yi, Laconi, Ezio, Marongiu, Fabio, Al-Mulla, Fahd, Chiaradonna, Ferdinando, Darroudi, Firouz, Martin, Francis L., Van Schooten, Frederik J., Goldberg, Gary S., Wagemaker, Gerard, Nangami, Gladys N., Calaf, Gloria M., Williams, Graeme P., Wolf, Gregory T., Koppen, Gudrun, Brunborg, Gunnar, Lyerly, H. Kim, Krishnan, Harini, Ab Hamid, Hasiah, Yasaei, Hemad, Sone, Hideko, Kondoh, Hiroshi, Salem, Hosni K., Hsu, Hsue-Yin, Park, Hyun Ho, Koturbash, Igor, Miousse, Isabelle R., Scovassi, A.Ivana, Klaunig, James E., Vondráček, Jan, Raju, Jayadev, Roman, Jesse, Wise, John P., Sr., Whitfield, Jonathan R., Woodrick, Jordan, Christopher, Joseph A., Ochieng, Josiah, Martinez-Leal, Juan F., Weisz, Judith, Kravchenko, Julia, Sun, Jun, Prudhomme, Kalan R., Narayanan, Kannan B., Cohen-Solal, Karine A., Moorwood, Kim, Gonzalez, Laetitia, Soucek, Laura, Jian, Le, D’Abronzo, Leandro S., Lin, Liang-Tzung, Li, Lin, Gulliver, Linda, McCawley, Lisa J., Memeo, Lorenzo, Vermeulen, Louis, Leyns, Luc, Zhang, Luoping, Valverde, Mahara, Khatami, Mahin, Romano, Maria F., Chapellier, Marion, Williams, Marc A., Wade, Mark, Manjili, Masoud H., Lleonart, Matilde E., Xia, Menghang, Gonzalez Guzman, Michael J., Karamouzis, Michalis V., Kirsch-Volders, Micheline, Vaccari, Monica, Kuemmerle, Nancy B., Singh, Neetu, Cruickshanks, Nichola, Kleinstreuer, Nicole, van Larebeke, Nik, Ahmed, Nuzhat, Ogunkua, Olugbemiga, Krishnakumar, P. K., Vadgama, Pankaj, Marignani, Paola A., Ghosh, Paramita M., Ostrosky-Wegman, Patricia, Thompson, Patricia A., Dent, Paul, Heneberg, Petr, Darbre, Philippa, Leung, Po Sing, Nangia-Makker, Pratima, Cheng, Qiang, Robey, R. Brooks, Al-Temaimi, Rabeah, Roy, Rabindra, Andrade-Vieira, Rafaela, Sinha, Ranjeet K., Mehta, Rekha, Vento, Renza, Di Fiore, Riccardo, Ponce-Cusi, Richard, Dornetshuber-Fleiss, Rita, Nahta, Rita, Castellino, Robert C., Palorini, Roberta, Hamid, Roslida A., Langie, Sabine A. S., Eltom, Sakina E., Brooks, Samira A., Ryeom, Sandra, Wise, Sandra S., Bay, Sarah N., Harris, Shelley A., Papagerakis, Silvana, Romano, Simona, Pavanello, Sofia, Eriksson, Staffan, Forte, Stefano, Casey, Stephanie C., Luanpitpong, Sudjit, Lee, Tae-Jin, Otsuki, Takemi, Chen, Tao, Massfelder, Thierry, Sanderson, Thomas, Guarnieri, Tiziana, Hultman, Tove, Dormoy, Valérian, Odero-Marah, Valerie, Sabbisetti, Venkata, Maguer-Satta, Veronique, Rathmell, W. Kimryn, Engström, Wilhelm, Decker, William K., Bisson, William H., Rojanasakul, Yon, Luqmani, Yunus, Chen, Zhenbang, and Hu, Zhiwei
- Abstract:
- Lifestyle factors are responsible for a considerable portion of cancer incidence worldwide, but credible estimates from the World Health Organization and the International Agency for Research on Cancer (IARC) suggest that the fraction of cancers attributable to toxic environmental exposures is between 7% and 19%. To explore the hypothesis that...
- Resource Type:
- Article
- Full Text:
- doi:10.1093/carcin/bgv039 Review Lin Li78, Linda Gulliver79, Lisa J.McCawley80, Lorenzo Memeo81