Oregon's estuaries are important ecosystems for scientific study. Consequently, knowledge of what research has been conducted helps us identify benchmarks and plan new projects. A comprehensive bibliography of published research, technical reports, local documents, and data sets is one means of recording this knowledge. For these reasons, the Guin Library...
Multiagent approaches are well suited to designing autonomous solutions for systems that feature complex interactions between many individuals such as in autonomous traffic systems and multi-robot exploration systems. However, creating autonomous agents that function effectively in these systems is a challenging task. In these complex environments, agents need informative reward...
The shortage of physicians serving rural communities is well documented. To address the rural shortage, medical schools have developed extracurricular programs, called rural health tracks, with an intent to foster medical students’ interest in serving rural communities. While there has been some research about the effects of these tracks, almost...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Autonomous agents that sense, decide, act, and coordinate effectively with each other are critical in many real-world domains such as autonomous driving, search and rescue missions, air traffic management, and underwater or deep space exploration. All such domains share a key difficulty: though high-level mission goals are clear to system...
In 2017, the cost of congestion in the United States was around 305 billion dollars, and city-dwellers, on average, lost 1400 dollars while sitting 42 hours in traffic jams. Aiming for better mobility and more efficient utilization of the transportation network, emerging connected and autonomous vehicle (CAV) technologies and their...
Ocean acidification (OA) is the result of increasing concentrations of anthropogenic carbon dioxide (CO₂) emissions, leading to a suite of alterations to specific parameters of ocean chemistry, which can negatively impact many marine organisms and ecosystems. Understanding how to measure and monitor the chemistry of OA will require specialized education...
The focus of this dissertation is the analysis of submesoscale and finescale features measured at oceanic fronts and the role they play in the transport of heat and salt. Two different geographical areas were used to analyze this transport: one, an area on the western side of the North Atlantic...
Resilient water, food, and energy management strategies for an ever-growing population and changing environment depends on our understanding of water and carbon cycles from local to global scales. Fluxes of water and carbon are coupled by photosynthesis and plant transpiration cycles the largest fraction of terrestrial water from the land...
Forests dominate carbon (C) exchanges between the terrestrial biosphere and the atmosphere on land. In the long term, the net carbon flux between forests and the atmosphere has been significantly impacted by changes in forest cover area and structure due to ecological disturbances and management activities. Current empirical approaches for...
Riparian vegetation along streams provides a suite of ecosystem services in rangelands and thus is the target of restoration when degraded by over-grazing, erosion, incision, or other disturbances. Assessments of restoration effectiveness depend on defensible monitoring data, which can be both expensive and difficult to collect. We present a method...
Wet meadow ecosystems are a useful natural laboratory in which to explore feedbacks between biogenic and geologic controls on valley bottom landforms. Characterized by flat valley floors flanked by higher-gradient hillslopes, these meadows are singular both in that they represent depositional features in what is primarily an erosional environment, and...
Bedrock meandering rivers are sinuous channels that pair steep bedrock outside banks with lower gradient slip-off slopes on the inside of bends. These rivers have the potential to record information on climatic and tectonic “external” forcings in their morphology (e.g., longitudinal profiles, strath terraces, channel and valley dimensions). However, geology...
Research on the population genetics of microbial organisms requires the use of specialized analyses designed for clonal organisms to avoid violating the assumptions of traditional population genetic models. The tools necessary for performing these analyses existed as a set of unrelated software with non-overlapping capabilities and did not cover all...
The purpose of this thesis is to understand the experiences that Nahua children, in rural Mexico, have as they attend schools that are primarily influenced by formal Western education in relation to their own ways of learning and knowing. This research took place over the course of three months within...
Proceedings of the Eighteenth Biennial Conference of the International Institute of Fisheries Economics and Trade, held July 11-15, 2016 at Aberdeen Exhibition and Conference Center (AECC), Aberdeen, Scotland, UK.
As dams approach the end of their useful life, there is need to predict where and how accumulated sediment will move following their removal to estimate impacts on aquatic habitat and infrastructure. Flume studies suggest that sediment pulses disperse in place for most dams, but it is hypothesized that a...
This document provides details of the Scientific and Social Programs at the NAAFE Forum 2015, Economic Sustainability, Fishing Communities, and Working Waterfronts, held in Ketchikan, Alaska, May 20-22, 2015. The conference was organized by Keith Criddle and Quentin Fong, University of Alaska Fairbanks, School of Fisheries and Ocean Sciences, with...
The relationship between carbon burial and sedimentation in reservoirs is unknown, exposing gaps in our fundamental understanding of the transport, processing, and deposition of sediment and organic matter in fluvial and lacustrine systems and contributing to uncertainty in our understanding of the net impact of dams to the global carbon...
The Valley of Oaxaca, Mexico was home to one of the most intensively-studied archaic states in the New World. Centered at the hilltop city of Monte Albán, the Zapotec State first arose around 500 BC and eventually encompassed much of the present-day state of Oaxaca. But by the Late Classic...
Despite advances in the understanding of rain-on-snow storms and their resulting peak flows, little is understood about the response of snowmelt to precipitation and the relative timing of the two at multiple temporal scales within such events. To address this issue, climate, snowmelt, and streamflow data were analyzed for 26...
Seeding is a vital tool to facilitate recovery of degraded ecosystems, but low seedling recruitment rates limit the utility of this practice in a range of ecosystems across the globe. Plant functional traits impact individual fitness through effects on growth, reproduction and survival. Consequently, seed and seedling trait variation among...
For the past several decades, amphibian populations have been decreasing
around the globe at an unprecedented rate. Batrachochytrium dendrobatidis (Bd), the fungal
pathogen that causes chytridiomycosis in amphibians, is contributing to amphibian declines.
Natural and anthropogenic environmental factors are hypothesized to contribute to these
declines by reducing the immunocompetence of...
Understanding how the interactions and feedbacks between plant function, climate, and soils ultimately affects the terrestrial water balance and subsurface flow processes is major challenge in scientific hydrology. This dissertation summarizes the findings of a manipulative climate warming experiment, an observational field study that utilized stable-isotope tracers, and associated modeling...
Ungulate behavior has been studied extensively but direct observation of free-ranging animals over long periods of time and large geographic areas is often prohibitively difficult. Improved technology, such as GPS collars fitted with motion-sensitive activity monitors, provides researchers with a potential tool to remotely collect fine scale activity and location...
Coho salmon (Oncorhynchus kisutch) migration and spawning are unique components of the salmon life cycle because they require synchrony of behavior with other individuals as well as with acceptable fluvial conditions. As with other organisms that exhibit group mating behavior, it is likely that environmental cues trigger coho salmon movement...
Most studies to date in the humid tropics have described a similar pattern of rapid translation of rainfall to runoff via overland flow and shallow subsurface stormflow. However, study sites have been few overall, and one particular system has received very little attention so far: tropical montane cloud forests (TMCF)...
This dissertation integrates a process-based hydrological investigation with an
ongoing paired-catchment study to better understand how forest harvest impacts
catchment function at multiple scales. We do this by addressing fundamental questions
related to the stocks, flows and transit times of water. Isotope tracers are used within a
top-down catchment intercomparison...
In this article, I examine the clinical practices engaged in by U.S. homebirth midwives and their clients from the beginning of pregnancy through to the immediate postpartum period, deconstructing them for their symbolic and ritual content. Using data collected from open-ended, semistructured interviews and intensive participant-observation, I describe the roles...
Since at least the 1970s, rural areas in the western United States, as elsewhere across the country and world, have been subject to social, economic, and political forces that have resulted in novel demographic and land tenure trends when compared to previous decades. Collectively, these processes of restructuring have created...
This dissertation has two objectives. The first objective is to determine where best to situate the study of mentoring (i.e. the 'making of scientists') on the landscape of the history of science and science studies. This task is accomplished by establishing mentoring studies as a link between the robust body...
Over the last 25 years structural adjustment programs have challenged Ecuador's ability to provide adequate social services and employment opportunities. In the wake of these policies, many women have turned to non-governmental agencies for possible solutions and assistance. Empowerment programs as a form of development work in particular have been...
Groundwater nitrate contamination is a well-documented issue in the Southern Willamette Valley (SWV) of Oregon, as a Groundwater Management Area (GWMA) has recently been declared. As a GWMA, groundwater nitrate monitoring must occur until regional concentrations are below 7 mg/L NO3-N. However, the presence of temporal variability can make it...
This dissertation focuses on the life of Dixy Lee Ray as it examines important developments in marine biology and biological oceanography during the mid twentieth century. In addition, Ray's key involvement in the public understanding of science movement of the 1950s and 1960s provides a larger social and cultural context...