A field study was conducted to determine the applicability of multivariate
geostatistical methods to the problem of estimating and simulating pesticide
concentrations in groundwater from measured concentrations of nitrate and pesticide,
when pesticide is undersampled. Prior to this study, no published attempt had been made
to apply multivariate geostatistics to...
Instability and turbulence in sheared, salt-fingering favorable stratification are studied
using three-dimensional direct numerical simulations (DNS). Salt-fingering favorable
stratification is gravitationally stable, because the unstable vertical gradient of salinity
is stabilized by temperature (warm, salty over cool, fresh water-masses). Salt-fingering
instability can occur at the interface of these different water-masses....
Vertical transports of plankton, momentum, heat, and turbulence are modeled. A novel integration of high resolution turbulence and biophysical modeling is used to show the influence of a Kelvin-Helmholtz instability on the vertical migration of simple gyrotactic organisms. A viscous limit on mixing driven by shear turbulence is proposed. Large...
The long-term evolution of Gaussian eddies is studied in an equivalent barotropic model using both linear and nonlinear quasi-geostrophic theory in an attempt to understand westward propagating satellite altimetry tracked mesoscale eddies. By examining both individual eddies and a large basin seeded with eddies, it is shown that long term...
A small eddy viscosity or mass diffusivity that varies with height has been found to have unexpected effects on the Kelvin-Helmholtz (KH) instability of a stably stratified shear layer near the neutral stability boundary. In particular, varying viscosity can increase the growth rate of the instability in contrast to the...
Thermohaline interleaving is an important mechanism for laterally fluxing salt, heat, and nutrients between oceanic water masses. Interleaving is driven by a release of potential energy resulting from the vastly differing diffusivities of heat and salt in seawater. The flows are composed of stacked intrusions that flux more buoyant and...
Non-toxic species of desiccated blue-green algae, or cyanobacteria, may offer potential for use as a fertilizer on irrigated crops. Here, the non-toxic cyanobacteria species Aphanizomenon flos-aquae (AFA), collected from Upper Klamath Lake, Oregon, was evaluated for use as a biofertilizer in a controlled experiment on Swiss chard “Bright Lights” (Beta...
The envelope function for Kelvin–Helmholtz billows growing from a point disturbance is derived on the basis of linear perturbation theory. The result describes an elliptical patch of billows that expands linearly in time as the billows grow. An analytical model of the dispersion relation is used to derive quantitative expressions...
The growth of secondary vortices on the braids separating Kelvin–Helmholtz billows is investigated via numerical simulations. The similarity theory of Corcos & Sherman (1976) is extended to include mixing processes with Prandtl number greater than unity, and is shown to provide a useful description of the physics of the braid...
Direct numerical simulations of turbulence resulting from Kelvin{Helmholtz instability
in stratified shear flow are used to examine the geometry of the dissipation
range in a variety of flow regimes. As the buoyancy and shear Reynolds numbers that
quantify the degree of isotropy in the dissipation range increase, alignment statistics
evolve...
A sequence of direct simulations is used to study mechanisms for the growth of secondary
circulations and turbulence in stratified shear flows. Five cases are examined, of which four deliver
Holmboe waves as the primary instability and the fifth generates Kelvin-Helmholtz billows.
Secondary circulations range in strength from weak, laminar...
The linear theory of double diffusive interleaving is extended to take account of baroclinic effects. This study goes beyond previous studies by including the possibility of modes with nonzero tilt in the alongfront direction, which allows for advection by the baroclinic frontal flow. This requires that the stability equations be...
This thesis describes the results of a linear stability analysis conducted on a simulated wind-forced ocean front. The ocean surface boundary layer regulates exchanges between the ocean and atmosphere, and the presence of turbulence in the surface layer can greatly impact climate and ocean life. Past research has shown that...
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Roger M. Samelson Eric D. Skyllingstad
ABSTRACT
This thesis describes the results
The properties and evolution of nonlinear internal waves (NLIWs) depend
upon the background conditions within which waves form, propagate, and dissipate. As a result, the NLIW field on the New Jersey shelf displayed dramatic variability during the Shallow Water 2006 experiment. Wave variability was exhibited by 1) amplitudes that ranged...
Whitebark pine (Pinus albicaulis) is an iconic North American high-elevation tree species currently threatened by climate change, mountain pine beetle, and white pine blister rust (WPBR), a lethal disease caused by the non-native fungal pathogen Cronartium ribicola. In collaboration with the USDA Forest Service Dorena Genetic Resource Center, germplasm was...
The transition of mature pollen to the progamic phase represents an important step in the regulation of plant sexual reproduction. The progamic phase encompasses the initiation of pollen tube germination, growth of the pollen tube through the stigma (the silk in maize) and concludes with fertilization of the female gametophyte....
Exploration of job opportunities and student involvement in learning are important principles of education. Congress recognized and emphasized these principles through recent legislation expanding education in several fields. Expanded vocational education has especially stressed job exploration and involvement in work programs. In many cases, however, this has come too late...
Numerical results are presented using a higher-order pseudo-spectral method in order to solve the Zakharov-Craig-Sulem formulation of the Euler model. We study the effects of variable bathymetry on weakly-dispersive, weakly-nonlinear, shallow water waves. Improved predictions on wave amplitude and shoaling behavior are developed by analytical means in the context of...
We hypothesized that calpain activity is elevated in response to muscle damage. To test this hypothesis, we examined the degradation of α-fodrin into its 150 and 145 kDa fragments following either 20 eccentric or isometric contractions. In addition, experiments were performed in the presence or absence of E-64-d, a calpain...
Mixing due to sheared salt fingers is studied by means of direct numerical simulations (DNS) of a double-diffusively unstable shear layer. The focus is on the “moderate shear” case, where shear is strong enough to produce Kelvin–Helmholtz (KH) instability but not strong enough to produce the subharmonic pairing instability. This...
The dependence of mixing efficiency on time-varying forcing is studied by direct numerical simulation
(DNS) of Kelvin–Helmholtz (KH) instability. Time-dependent forcing fields are designed to reproduce a
wavelike oscillation by solving the equations of motion in a tilted coordinate frame and allowing the tilt angle
to vary in time. Mixing...
In this paper the authors investigate the action of ambient turbulence on thermohaline interleaving using both theory and numerical calculations in combination with observations from Meddy Sharon and the Faroe Front. The highly simplified models of ambient turbulence used previously are improved upon by allowing turbulent diffusivities of momentum, heat,...
The linear stability of a double-diffusively stratified, inflectional shear flow is investigated. Double-diffusive stratification has little effect on shear instability except when the density ratio R[subscript]ρ is close to unity. Double-diffusive instabilities have significant growth rates and can represent the fastest-growing mode even in the presence of inflectionally unstable shear...
The generation mechanism for downslope windstorms was shown to vary according to inversion height and strength using a series of numerical experiments. Strong low level inversions were dominated by interfacial waves on the inversion, while high level inversion and cases without an inversion were dominated by internal gravity wave (IGW)...
I. Lithium alkyl and aryl monosubstituted cyclooctatetraenide
dianions (Li₂ C₈H₇-R; R = methyl, n- butyl, sec- butyl, tert- butyl,
phenyl and benzyl) were synthesized by the reaction of the appropriate
organolithium reagent with cyclooctatetraene in diethyl ether or
tetrahydrofuran. The reaction occurred cleanly and with good yield
of lithium monosubstituted...
The influence of natural enemies and plant apparency in
determining the abundance of the cabbage aphid Brevicoryne brassicae L.
and the imported cabbageworm Pieris rapae L. was examined on collards
grown in a collard monoculture and in a collard-alfalfa biculture.
This design was used to examine the factors affecting collardherbivore...
This paper investigates the atmospheric circulation and transport characteristics
of the Martian atmosphere (as modeled by a Mars GCM) for three sets of
conditions. The conditions are based on a combination of season and dust loading
(as parameterized by the optical depth, τ). The first experiment is for the Northern...
Kelvin-Helmholtz (KH) instability, characterized by the distinctive finite-amplitude billows it generates, is an important mechanism in the development of turbulence in the stratified interior of the ocean. In particular, it is often assumed that the onset of turbulence in internal waves begins in this way. Clear recognition of the importance...
Deep cycle mixing in the cold tongue of the equatorial
Pacific Ocean is associated with a mean flow regime
in which the gradient Richardson number Ri (a ratio of
stratification to shear that affects the evolution of turbulence)
fluctuates about a critical value near 1/4. This is the state
of...
Full Text:
equatorial
Pacific Ocean
Smyth, W. D., and J. N. Moum (2013), Marginal instability and deep cycle
Motivated by the tendency of high-Prandtl-number fluids to form sharp density interfaces, the authors investigate the evolution of Holmboe waves in a stratified shear flow through direct numerical simulation. Like their better-known cousins, Kelvin–Helmholtz waves, Holmboe waves lead the flow to a turbulent state in which rapid irreversible mixing takes...
Interleaving motions on a wide, baroclinic front are modeled using a second-moment closure to represent unresolved fluxes by turbulence and salt fingering. A linear perturbation analysis reveals two broad classes of unstable modes. First are scale-selective modes comparable with interleaving as observed in oceanic fronts. These correspond well with observations...
Turbulence resulting from Kelvin–Helmholtz instability in layers of localized stratification and shear is studied by means of direct numerical simulation. Our objective is to present a comprehensive description of the turbulence evolution in terms of simple, conceptual pictures of shear–buoyancy interaction that have been developed previously based on assumptions of...
Direct numerical simulations of turbulence resulting from Kelvin–Helmholtz instability in stably
stratified shear flow are used to study sources of anisotropy in various spectral ranges. The set of
simulations includes various values of the initial Richardson and Reynolds numbers, as well as
Prandtl numbers ranging from 1 to 7. We...
Deep cycle mixing in the cold tongue of the equatorial
Pacific Ocean is associated with a mean flow regime
in which the gradient Richardson number Ri (a ratio of
stratification to shear that affects the evolution of turbulence)
fluctuates about a critical value near 1/4. This is the state
of...
Deep cycle mixing in the cold tongue of the equatorial
Pacific Ocean is associated with a mean flow regime
in which the gradient Richardson number Ri (a ratio of
stratification to shear that affects the evolution of turbulence)
fluctuates about a critical value near 1/4. This is the state
of...
In this paper we characterize changes in the level and spatial distribution of fishing effort during the extreme ocean temperature event known by oceanographers, climate scientists, and the public as “the Blob.” The Blob was an unprecedented marine heatwave that occurred off of the Pacific Coast of North America from...
In this study, we explored the relationships among gender, age, daily stressors, positive and negative affect, and neuroticism on cortisol outcomes in older men and women. We were particularly interested in whether variation in positive affect would have an effect on variation in negative affect and if this relationship would...
Despite its promise as a potentially beneficial new source of energy, the ocean-based renewable energy industry is still in its infancy, and like any new idea there are many unknowns with the potential to affect both people and our natural environments. A permit for marine renewable energy (MRE) must cut...
Symbiosis is the close and protracted interaction between organisms. The molecular interactions that occur during symbiosis are complex with multiple barriers that must be overcome. Many Gram-negative, host-associated bacteria use a type III secretion system to mediate associations with their eukaryotic hosts. This secretion system is a specialized apparatus for...
Verticicladiella wageneri Kendrick is a vascular wilt
pathogen of conifers, causing a black staining of
colonized sapwood of roots and lower stem. In Douglas-fir,
V. wageneri is intimately associated with insects.
Hylastes nigrinus, Pissodes fasciatus, and Steremnuis
carinatus are commonly associated with diseased hosts,
carry inoculum of V. wageneri in...
This dissertation describes arthropod responses to and effects on decay processes in ponderosa pine, a dominant forest canopy tree in northern California. We used both descriptive and experimental field techniques to establish how arthropod assemblages depend on and are important to the disintegration of woody structures in forests of this...
Enantioselective epoxidation of crotyl alcohol, followed
by a cuprate mediated methylation, gave a 1:1 mixture of
(2S) -3- methyl -1,2- butanediol and (2R,3S)-2-methy1-1,3-
butanediol. The latter was separated as its 2,4,6-trimethylbenzenesulfonate
derivative and converted via the
iodide to the corresponding phosphonium salt. The separated
butanediol derivatives were independently transformed
to...
Described herein is the synthesis of an uncharged stereoregular oligonucleotide
analog consisting of cytosine bases linked at specific intervals to a polyamide backbone
derived from (L)-glutamic acid. Preparation of this analog entailed borane reduction of
(L)- pyroglutamic acid to give optically pure lactam alcohol 9. Tosylation and alkylation
with cytosine...
Groundwater nitrate contamination is a well-documented issue in the Southern Willamette Valley (SWV) of Oregon, as a Groundwater Management Area (GWMA) has recently been declared. As a GWMA, groundwater nitrate monitoring must occur until regional concentrations are below 7 mg/L NO3-N. However, the presence of temporal variability can make it...