Bacteriophage S-CRM01 has been isolated from a freshwater strain of Synechococcus and shown to
be present in the upper Klamath River valley in northern California and Oregon. The genome of this
lytic T4-like phage has a 178,563 bp circular genetic map with 297 predicted protein-coding genes
and 33 tRNA genes...
The most important part of parallel computation is communication. Except in the most embarassingly parallel examples, processors cannot work cooperatively to solve a problem unless they can communicate. One way to solve the problem of communication is to use an interconnection network. Processors are located at nodes of the network,...
Over the past century, life expectancy in the United States has dramatically increased leading to an increasingly aging population with people reaching, and spending more years in ‘old age’. While this unprecedented shift in population demographics represents great strides for humanity, it is not without cost. One consequence of longer...
Heat transfer and fluid mechanical behavior of water
flowing horizontally in vertically-narrow rectangular
channels was studied in this work. Friction factor and
Nusselt number variations were determined experimentally
for four different wall heating conditions, and for aspect
ratios(height to width) of 5, 4, 3, 2, and 1. Wall
heating conditions...
Freshwater cyanobacterial blooms are a nuisance and health threat in the Pacific Northwest. The accepted methods of characterizing these blooms by microscopic cell counts cannot differentiate between toxic and non-toxic strains of the cyanobacterium Microcystis. Also, there is limited understanding of freshwater cyanophage that may control bloom dynamics. In order...
Intracellular delivery of mRNA holds great potential for vaccine and therapeutic discovery and development. This is realized by the preeminent role mRNA is playing in the record-breaking pace of SARS-CoV-19 vaccine development. Recent advances in chemical modifications of mRNA have enabled high-efficiency gene expression with superior spatiotemporal control while eliminating...
Plant pathogenic Rhodococcus species are persistent pathogens able to cause severe growth deformities on a large range of hosts. The most well studied species, R. fascians is predicted by current models to synthesize a mixture of cytokinins that act to directly perturb the hosts' hormone balances, which results in abnormal...
The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary...
Concurrent error detection (CED) is the detection of errors or faults in a circuit or data path concurrent with normal operation of that circuit. The general approach for CED is to calculate a check symbol for the inputs to the circuit under operation, predict the check symbol that will result...
The development of nanomaterials and the potential enhancement of their chemical, mechanical, electrical, and optical properties have led to the investigation of methods for their synthesis at lower cost with enhanced performance for next generation devices. Along with the pursuit of new materials that exhibit properties of interest, industry requires...
Comparative analysis of multiple angiosperm genomes has implicated gene duplication in the expansion and diversification of many gene families. However, empirical data and theory suggest that whole-genome and small-scale duplication events differ with respect to the types of genes preserved as duplicate pairs. We compared gene duplicates resulting from a...
Neisseria gonorrhoeae is the sexually transmitted pathogen responsible for millions of cases of gonorrhea worldwide each year. Rapidly-spreading antibiotic resistance is diminishing the ability to effectively treat a disease with significant consequences to female and male reproductive health, as well as to neonatal well-being. A protective vaccine has the potential...
Bacteriophage S-CRM01 has been isolated from a freshwater strain of Synechococcus and shown to
be present in the upper Klamath River valley in northern California and Oregon. The genome of this
lytic T4-like phage has a 178,563 bp circular genetic map with 297 predicted protein-coding genes
and 33 tRNA genes...
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. 3
Cameron Thrash1, Samuel E. Bennett3, Shin-Cheng Tzeng4 and Claudia S. Maier4 4
1Department of
Bacteriophage S-CRM01 has been isolated from a freshwater strain of Synechococcus and shown to
be present in the upper Klamath River valley in northern California and Oregon. The genome of this
lytic T4-like phage has a 178,563 bp circular genetic map with 297 predicted protein-coding genes
and 33 tRNA genes...
The Farnesoid X Receptor (FXR) is a member of the nuclear receptor superfamily of transcription factors that plays a key role in the regulation of bile acids, lipid and glucose metabolisms. The regulative function of FXR is governed by conformational changes of the ligand binding domain (LBD) upon ligand binding....
Disaster response robots need to be simultaneously able to survive extreme environment and complete the mission efficiently and robustly. One of the determinants is the performance of the actuators in each joint, which drive the robot to the desired motion accurately. In robotics society, people usually build their robots directly...
Short-range wireless communications continually attract interest from both industry and academia, and it is changing our life in every aspect in the last decade. The design of wireless transceivers is the bottleneck for variety applications, due to RF modeling inaccuracy, stringent FCC regulations over the transmitted power spectrum, interference, multi-path...
Advances in low-power digital integration and microelectro-mechanical systems (MEMS) have paved the way for micro-sensors. These sensors are equipped with data processing capabilities along with sensory circuits. Sensor data are processed on these individual sensors and transmitted to the target (sink). Lowcost integration and small sizes of these sensors have...
Obesity is a major public health problem and is a risk factor for hypertension, diabetes, heart disease and cancer. In addition, the prevalence of obesity appears to be increasing worldwide, making it important to determine the nature and extent of obesity in populations at risk. The aim of this study...
In recent years, the research community's interest in fully integrated mm-Wave wireless communication systems has increased significantly. With the standards for 5G NR now in place, the focus has shifted to actual deployment. Mm-Wave systems provide wider bandwidths, higher capacity, and lower latency than existing systems such as 4G. Higher...
The metal organic framework, MOF-74(Ni), was synthesized in a continuous flow microwave-assisted reactor obtaining a high space-time yield (~90 g h⁻¹ L⁻¹) and 96.5% conversion of reagents. Separation of the nucleation and growth steps was performed by using uniform and rapid microwave heating to induce nucleation, which allowed a substantial...
Proteins are essential to all biological systems. Proteins participate in numerous cellular processes by interacting with other proteins, other metabolites and membranes in a dynamic environment. Studying the structural and conformational properties of proteins in the solution phase is necessary to understand their protein folding and interaction dynamics. This research...
The high level of parallelism in throughput processors such as GPGPUs has resulted in significantly changed on-chip data traffic behaviors. This demands new research to identify and address the limiting factors of networks-on-chip (NoCs) in the context of throughput processors. In this work, we first quantitatively analyze the performance of...
Resistive random access memory (RRAM) is a non-volatile memory technology based on resistive switching in a dielectric or semiconductor sandwiched between two different metals. Also known as memristors, these devices are potential candidates for a next-generation replacement for flash memory. In this thesis, bipolar resistive switching is reported for the...
This dissertation has two objectives. The first objective is to determine where best to situate the study of mentoring (i.e. the 'making of scientists') on the landscape of the history of science and science studies. This task is accomplished by establishing mentoring studies as a link between the robust body...
Alcoholic liver disease (ALD) continues to be one of the major public health problems in the United States and worldwide. Complicated by factors including gender, polymorphisms of alcohol-metabolizing enzymes, immunologic factors, exposures to other substances/drugs, hepatic viral infections, nutritional deficiencies, and obesity, ALD is a complex disease that requires a...
The analysis of oxidative stress-induced post-translational modifications remains challenging due to the chemical diversity of these modifications, the possibility of the presence of positional isomers and the low stoichiometry of the modified proteins present in a cell or tissue proteome. Alcoholic liver disease (ALD) is a multifactorial disease in which...
The scarcity of wireless spectrum resources and the overwhelming demand for wireless broadband resources have prompted industry, government agencies and academia within the wireless communities to develop and come up with effective solutions that can make additional spectrum available for broadband data. As part of these ongoing efforts, cognitive radio...
The post-translational modification of proteins by electrophilic oxylipids is emerging as an important mechanism that contributes to the complexity of proteomes. Enzymatic and non-enzymatic oxidation of biological lipids results in the formation of chemically diverse electrophilic carbonyl compounds, such as 2-alkenals and 4-hydroxy alkenals, epoxides and eicosanoids with reactive cyclopentenone...
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detection and identification
Yury V. Vasil’ev, Shin-Chen Tzeng, Lin Huang and Claudia S. Maier
The post-translational modification of proteins by electrophilic oxylipids is emerging as an important mechanism that contributes to the complexity of proteomes. Enzymatic and non-enzymatic oxidation of biological lipids results in the formation of chemically diverse electrophilic carbonyl compounds, such as 2-alkenals and 4-hydroxy alkenals, epoxides and eicosanoids with reactive cyclopentenone...
Humanitarian logistics in the post-disaster phase of an earthquake requires detailed planning about the relief distribution network including assigning available distribution centers (DCs) to the affected areas, distribution of the relief commodities demanded by the affected population, and efficient allocation of the available vehicle fleet for the distribution in a...
β-chitin/chitosan extracted from newly utilized jumbo squid (Dosidicus gigas) pens were investigated in respect to their physicochemical properties, polymeric structures, deacetylation and depolymerization characteristics, and antioxidant and antibacterial activities. These functional properties were further compared with α-chitin/chitosan prepared from shrimp shells. Due to the low mineral content (< 1%) and...
Parallel computers are classified into: Multiprocessors, and multicomputers. A multiprocessor system usually has a shared memory through which its processors can communicate. On the other hand, the processors of a multicomputer system communicate by message passing through an interconnection network. A widely used class of interconnection networks is the toroidal...
The symbiosis between cnidarians, such as corals and sea anemones, and photosynthetic dinoflagellates belonging to the genus Symbiodinium spp. is one of the most productive in the marine environment. This mutualistic endosymbiosis allow reef-building corals to lay down the foundation of coral reef ecosystems, which supports a highly biodiverse community...
The Machine Learning (ML) algorithms are increasingly explored in varies of fields including designing and optimizing computer systems. Recent research, such as optimizing memory/cache prefetching by ML training or predicting traffic pattern in throughput processors, also exhibits a promising future of introducing ML into computer system design and optimization. Throughput...
The post-translational modification of proteins by electrophilic oxylipids is emerging as an important mechanism that contributes to the complexity of proteomes. Enzymatic and non-enzymatic oxidation of biological lipids results in the formation of chemically diverse electrophilic carbonyl compounds, such as 2-alkenals and 4-hydroxy alkenals, epoxides and eicosanoids with reactive cyclopentenone...
Spectrum overcrowding, ever increasing demand for high data rate and increased mobility requirements are three major challenges 5G-technology is trying to address. In this thesis I start with a RF front-end technique that deals with blocker interference arising from spectrum overcrowding both across frequency bands and within the same frequency...
The present study sought to define a possible role of phosphorus-stimulated
ammoniagenesis, previously observed in vitro and in
experimental animals, in the hypocalciuric effect of phosphorus in young
men. It was hypothesized that titrating some of the hydrogen ions
destined for excretion with ammonia would be beneficial to kidney
calcium...
The ability of salmon plasma protein (SPP) obtained from Chinook salmon at the Klaskanine Fish Hatchery (Astoria, OR) to inhibit protease enzymes found in Pacific whiting (PW) surimi and salmon mince as well as the effect of SPP on the gelation properties of PW surimi under various heating conditions was...
Mycobacterium avium subsp. hominissuis (MAH) is a pervasive environmental bacterium that can cause opportunistic infections in humans. Among the most robust and hardy members of the Mycobacterium genus, M. avium can persist and thrive in a range of challenging environments, including many which place it in direct contact with humans....
Pathogenic mycobacteria are important agents causing human disease. Mycobacterium avium subsp. hominissuis
(M. avium) is a species of recalcitrant environmental pathogen. The bacterium forms robust biofilms that allow it to
colonize and persist in austere environments, such as residential and commercial water systems. M. avium is also an
opportunistic pathogen...
About 48 million cases of Foodborne illnesses (FBIs) are estimated to occur every year in the US. These are diseases caused by contamination of foods with bacteria, viruses, protozoa, parasites and toxic chemicals. Clostridium difficile infections (CDIs) are an important health-care and community associated problem. Since C. difficile spores have...
The objective of this study was to determine the effects of processing on sodium - potassium and calcium - phosphorus ratios in tuna canned in oil and in water, peanut butter, white and whole wheat flours. Mineral levels were determined by atomic absorption spectrophotometry in food samples at various stages...
Pathogenic mycobacteria are important agents causing human disease. Mycobacterium avium subsp. hominissuis
(M. avium) is a species of recalcitrant environmental pathogen. The bacterium forms robust biofilms that allow it to
colonize and persist in austere environments, such as residential and commercial water systems. M. avium is also an
opportunistic pathogen...
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dismutase in macrophages and neutrophil survival
Michael McNamara1,4†, Shin-Cheng Tzeng3,4†, Claudia
Pathogenic mycobacteria are important agents causing human disease. Mycobacterium avium subsp. hominissuis
(M. avium) is a species of recalcitrant environmental pathogen. The bacterium forms robust biofilms that allow it to
colonize and persist in austere environments, such as residential and commercial water systems. M. avium is also an
opportunistic pathogen...
The prevalence of Internet-of-Things (IoT) applications leads to an increasing focus on the design and optimization of sensor nodes. Battery lifetime and associated costs of battery replacement often limits the long term operation and viability of sensor nodes. RF wireless energy harvesting on the other hand can be appealing since...