This dissertation is a collection of three manuscripts that serve to fill the knowledge gaps and advance methods of detecting the effects of contemporary forest harvesting in experimental catchment studies. While there is a preponderance of studies evaluating the environmental effects of forest harvesting in the western United States, few...
The unsustainable use of fresh water sources and unavailability of fresh water in certain parts of the world have created a demand for water desalination systems. Desalination methods are effective at producing consumable water, but often require large scale setups, high energy consumption, and careful maintenance. A team of students...
This paper addresses the high model complexity and overconfident frame labeling of state-of-the-art (SOTA) action segmenters. Their complexity is typically justified by the need to sequentially refine action segmentation through multiple stages of a deep architecture. However, this multistage refinement does not take into account uncertainty of frame labeling predicted...
Current riparian management objectives in the Pacific Northwest promote both retention of existing conifers and conversion of hardwood-dominated areas to conifers. Although understanding of relationships between riparian vegetation and salmonid prey availability is growing, temporal variation in these relationships is poorly understood. Seasonal fluxes in availability of aquatic and terrestrial...
Shallow landslides are destructive natural hazards that result in widespread losses, both of infrastructure and lives, throughout the world. To help mitigate the impact of landslide hazards, they are commonly characterized across a regional scale by (1) their location and likelihood using susceptibility maps, (2) their magnitude and frequency using...
Image segmentation is the process by which an image is divided into number of regions. The regions are to be homogeneous with respect to some property. Definition of homogeneity depends mainly on the expected patterns of the objects of interest. The algorithms designed to perform these tasks can be divided...
Waldo Lake, located in the Oregon Cascades, is
considered to be one of the most dilute lakes in the
world. Even with very low nutrient concentrations and
sparse populations of zooplankton, introduced fish in the
lake are large in size and in good condition when compared
to fish from other...
Descendants of eastern cottontails from Ohio
(Sylvilagns floridanus) introduced in Benton County,
Oregon and cottontails from Ohio were sampled and
analyzed morphometrically and colorimetrically. In
general, Oregon cottontails were smaller and lighter in
color than Ohio rabbits. Introgression and interspecific
competition with the smaller and darker colored native
brush rabbit...
This research presents a methodology to identify and analyze human-system interactions, and their potential failure modes using a functional decomposition approach during the early system design stage.
The fundamental research contribution of this work is the development of a framework to identify associations between physical user-product interactions, generic human errors...
Small-scale fisheries often suffer from weak, formal governance, and in response they organize in various ways. These self-organizational arrangements rely on the capacity of informal institutions, such as norms and communication, in generating social cohesion among actors in the supply chain and therefore improve the likelihood of generating commonly devised...
Two beaches with significant differences in grain size and thus in beach profile morphology and response to wave conditions were studied on the Oregon coast. Gleneden Beach, just south of Siletz Spit and Lincoln City, has a median grain size of 0.36 mm (medium sand) and a steep beach face...
This thesis is the combination of two research publications working toward a unified strategy in which the design of complex engineered systems can be completed using a multiagent coordination approach. Current engineered system modeling techniques segment large complex models into multiple groups to be simulated independently. These methods restrict the...
The use of high strength steel reinforcement has the potential to provide economic and constructability benefits when used in reinforced concrete structures. However, more research is needed to justify and confidently allow its use. Current design provisions limit the nominal yield strength of reinforcing steel bars to 60 ksi (420...
This paper focuses on a coastal fishery in Biscay Bay where a variety of fishing vessels operate. To prevent overfishing in this very coastal and very sensitive area, a lot of regulations apply, linked to a licensing system implemented since the begininning of the 80s by fishermen's representatives. A survey...
The Vizcaino block is an anomalously shallow region of the western U.S continental margin located southwest of the Mendocino triple junction. It originated as part of the accretionary prism of the North America plate and was transferred to the Pacific plate in the Miocene as the Pacific-North America plate boundary...
Global 1° × 1° climatologies of the first baroclinic gravity-wave phase speed c¹ and the Rossby radius of deformation λ1 are computed from climatological average temperature and salinity profiles. These new atlases are compared with previously published 5° × 5° coarse resolution maps of λ₁ for the Northern Hemisphere and...
Ammonia oxidation is the first and rate-limiting step in nitrification and is dominated by two distinct groups of microorganisms in soil: ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). AOA are often more abundant than AOB and dominate activity in acid soils. The mechanism of ammonia oxidation under acidic conditions has...
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-50
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PCA 1 (78.9 %)
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Plant pathogens secrete an arsenal of small secreted proteins (SSPs) acting as effectors that modulate host immunity to
facilitate infection. SSP-encoding genes are often located in particular genomic environments and show waves of concerted
expression at diverse stages of plant infection. To date, little is known about the regulation of...
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L. Soyer1, Mennat El Ghalid1, Nicolas Glaser1, Bénédicte Ollivier1, Juliette Linglin1,
Jonathan
Background:
As global climate change and exponential human population growth intensifies pressure on agricultural systems, the need to effectively manage invasive insect pests is becoming increasingly important to global food security. Drosophila suzukii is an invasive pest that drastically expanded its global range in a very short time since 2008,...
This study examines potential interactions among the environmental variables likely to
affect larval walleye pollock Theragra chalcogramma feeding in the sea. Walleye pollock larvae were
sampled from Shelikof Strait, Gulf of Alaska, and from the eastern Bering Sea, with corresponding
environmental data. Variables used in our study were time spent...
The Gorda Escarpment is a north facing scarp immediately south of the Mendocino transform fault (the Gorda/Juan de Fuca-Pacific plate boundary) between 126°W and the Mendocino triple junction. It elevates the seafloor at the northern edge of the Vizcaino block, part of the Pacific plate, ~1.5 km above the seafloor...
Ammonia oxidation is the first and rate-limiting step in nitrification and is dominated by two distinct groups of microorganisms in soil: ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). AOA are often more abundant than AOB and dominate activity in acid soils. The mechanism of ammonia oxidation under acidic conditions has...
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. Lehtovirta-Morley,a Luis A. Sayavedra-Soto,b Nicolas Gallois,c Stefan Schouten,d Lisa Y. Stein,e James I
Wildfires are keystone components of natural disturbance regimes that maintain ecosystem structure and functions, such as the hydrological cycle, in many parts of the world. Consequently, critical surface freshwater resources can be exposed to post-fire effects disrupting their quantity, quality and regularity. Although well studied at the local scale, the...
Dysferlin is a ∼230 kDa terminally anchored membrane protein that is ubiquitously expressed, but is particularly enriched in skeletal and cardiac muscle tissue. Mutations covering the length of the protein have been linked to muscle wasting diseases including limb-girdle muscular dystrophy and Myoshi myopathy. Dysferlin has been shown to play...
Common root rot is a major disease of commercially grown snap bean (Phaseolus vulgaris L.) on the irrigated sandy soils of central Wisconsin. The objective of this study was to determine the relationships between soil properties and suppressiveness to common root rot of snap bean (causal agent Aphanomyces euteiches) in...
Writing a program that performs well in a complex environment is a challenging task. In such problems, a method of deterministic programming combined with reinforcement learning (RL) can be helpful. However, current systems either force developers to encode knowledge in very specific forms (e.g., state-action features), or assume advanced RL...
The growth of Brettanomyces bruxellensis is a major cause of wine spoilage due tothe production of the volatile phenols 4-ethylphenol (4-EP) and 4-ethylguaiacol (4-EG), derivatives of p-coumaric acid and ferulic acid. During the winemaking process,some microorganisms can impact the concentration of the 4-EP precursors pcoumaricand coutaric acid (tartaric acid-esterified p-coumaric...
Otoferlin is a C2-domain, transmembrane protein whose mutated form is responsible for the DFNB9 subtype of prelingual hearing impairment. Mutations in otoferlin cause an autosomal recessive, non-syndromic form of deafness that is characterized by auditory neuropathy/ auditory dissynchrony (AN/AD), meaning that the outer hair cells (OHCs) are normal, and the...
Time-dependent electronic transport is increasingly important to the state-of-the-art device design and fabrication. The development of nanoscale sensing, the harnessing and control of structural fluctuations, and the advancement of next-generation materials all require a treatment of quantum dynamics beyond the level of traditional methods and a more nuanced approach to...
Terrestrial biosphere models can help identify physical processes that control carbon
dynamics, including land–atmosphere CO₂ fluxes, and have great potential to predict the terrestrial
ecosystem response to changing climate. The skill of models that provide continental-scale carbon flux
estimates, however, remains largely untested. This paper evaluates the performance of continental-scale...
We constructed a comprehensive phylogeny of the genus Genea, with new molecular data from samples collected in several countries in temperate and Mediterranean Europe, as well as North America. Type specimens and authentic material of most species were examined to support identifications. The molecular identity of the most common species...
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”, 12 m
asl, sandy soil under Q. robur, leg. P. Chautrand (dog Darius), 27-II-2013, NVL, AH44108
We constructed a comprehensive phylogeny of the genus Genea, with new molecular data from samples collected in several countries in temperate and Mediterranean Europe, as well as North America. Type specimens and authentic material of most species were examined to support identifications. The molecular identity of the most common species...
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, Budapest, Hungary
Nicolas van Vooren
36 rue de la Garde, F-69005 Lyon, France
Vasileios Kaounas
Sokratous
Chemical and biological sensor technologies have advanced rapidly in the past five years. Sensors that require low power and operate for multiple years are now available for oxygen, nitrate, and a variety of bio-optional properties that serve as proxies for important components of the carbon cycle (e.g., particulate organic carbon)....
We constructed a comprehensive phylogeny of the genus Genea, with new molecular data from samples collected in several countries in temperate and Mediterranean Europe, as well as North America. Type specimens and authentic material of most species were examined to support identifications. The molecular identity of the most common species...
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Pinus pinea, P. pinaster Spain, Zamora, Toro,
Bosque de Montelarreina
KJ938896
G. pinicola JC12
Accurately monitoring tropical forest carbon stocks is a challenge that remains outstanding. Allometric models that consider tree diameter, height and wood density as predictors are currently used in most tropical forest carbon studies. In particular, a pantropical biomass model has been widely used for approximately a decade, and its most...
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pantropical allometries
Pierre Ploton1,2, Nicolas Barbier1, Stéphane Takoudjou Momo1,3, Maxime Réjou
Accurately monitoring tropical forest carbon stocks is a challenge that remains outstanding. Allometric models that consider tree diameter, height and wood density as predictors are currently used in most tropical forest carbon studies. In particular, a pantropical biomass model has been widely used for approximately a decade, and its most...
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diameter. 18
Source Country DataCM1 DataCM2 DataCD
P. Ploton Cameroon 77 77 39
Henry et al. (2010
The glaciated coastal mountain watersheds that drain into the Gulf of Alaska (GOA) provide a model laboratory to explore the challenges of hydrological modeling and study the impact of climate and glacier cover change on regional hydrology. The region is data-sparse and contains a complex assemblage of topography and land...
In the Pacific Northwest, multiple studies have found negative effects of
timber harvest on stream amphibians, but the results have been highly variable and
region-specific. In this collection of studies, I examined the short term effect of timber
harvest using a field study, and used lab work to examine a...
The Asian vinegar fly Drosophila suzukii (spotted wing Drosophila [SWD]) has emerged as a major invasive insect pest of small and stone fruits in both the Americas and Europe since the late 2000s. While research efforts have rapidly progressed in Asia, North America, and Europe over the past 5 years,...
The Global Earthquake Model (GEM) aims to develop uniform, openly available, standards, datasets and tools for worldwide seismic risk assessment through global collaboration, transparent communication and adapting state-of-the-art science. GEM Faulted Earth (GFE) is one of GEM’s global hazard module projects. This paper describes GFE’s development of a modern neotectonic...
Passive hydrophone technologies and a variety of acoustic methods are applied in
the deep-ocean and shallow water coastal environments of the northeast Pacific. A
catalog derived from U.S. Navy regional hydrophone array recordings of acoustic T- phases from seafloor earthquakes is examined, describing space/time patterns through
empirical orthogonal function analysis...
Using network architecture to describe a biological system is an effective organizational method. The utility of this approach, which generally applies to qualitative models, is enhanced by the addition of quantitative models characterizing the interactions between network nodes. A chromatophore-based signal transduction network is developed, and the highly interconnected major...
The HENRI system was developed to narrow the pulse width of TREAT from 89 ms to below 60 ms with the goal of improving the test reactor's ability to simulate RIAs in LWRs by rapidly injecting helium-3, a strong neutron poison, into the core. A coupled model using the CFD...
Dispersing hydrophilic nanofillers in highly hydrophobic polymer matrices is widely used to tune the mechanical properties of composite material systems. The ability to control the dispersion of fillers is closely related to the mechanical tunability of such composites. In this work, we investigate the physical–chemical underpinnings of how simple end-group...
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Encinas c,
Marius R. B. Mermet-Guyennet d, Nicolas Martzel e, Daniel Bonn d, Mischa Bonn a, Tobias
Dispersing hydrophilic nanofillers in highly hydrophobic polymer matrices is widely used to tune the mechanical properties of composite material systems. The ability to control the dispersion of fillers is closely related to the mechanical tunability of such composites. In this work, we investigate the physical–chemical underpinnings of how simple end-group...
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b, Christian Malm a, Noemi Encinas c, 3
Marius R. B. Mermet–Guyennet d, Nicolas Martzel e, Daniel
Space-based observations offer unique capabilities for studying spatial and temporal dynamics of the upper ocean inorganic carbon cycle and, in turn, supporting research tied to ocean acidification (OA). Satellite sensors measuring sea surface temperature, color, salinity, wind, waves, currents, and sea level enable a fuller understanding of a range of...
Non-native ecosystem engineers, which modify the structure and function of their ecosystems, are often a particularly concerning and costly group of invasive species. Such organisms may have substantial impacts on ecosystem services, or the benefits that humans derive from their ecosystems. Many factors play a role in the invasion success...