The Line Integral Convolution (LIC) is a mainstay of flow visualization. It is, however, computationally intensive, which limits its interactivity. Also, when used to view three-dimensional (3D) vector fields, the resulting images are dense and cluttered, making it difficult to perceive the flow on the interior parts of the field....
With the growing demand for portable/consumer electronics, such as digital
audio/video (AV), the downscaling of device dimensions, which enables the
integration of an increasing number of transistors in a single chip, is mandatory.
This trend also continuously pushes the power supply voltage down to reduce the
power consumption and improve...
The focus of this study is to develop a general and low-cost solution-based
process to fabricate micro- and nano-structured semiconductors that are suitable
for electronics. This process uses simple metal halide precursors dissolved in a
solvent (organic or aqueous) and is capable of forming uniform and continuous
thin films via...
The world's oceans contain tremendous renewable energy potentials. It is estimated that if 0.2% of the ocean's untapped energy could be harnessed, it could provide power sufficient for the entire world [1]. This thesis provides a comprehensive description of the state-of-the-art of ocean energy extraction technologies and lessons learned from...
A significantly untapped renewable energy source exists in the world's oceans. It is estimated that if 0.2% of the ocean's untapped energy could be harnessed, it could provide power sufficient for the entire world. Ocean energy extraction is an old concept, and it is currently seeing the benefit of advancing...
Recent efforts show that microchannel technologies have much to offer the field of nanomanufacturing: the structuring of matter on the order of one billionth of a meter. During the synthesis of nanomaterials, microchannel reactors take advantage of large surface-to-volume ratios to accelerate heat and mass transport. This accelerated transport allows...
High data rate transmission has become an important challenge in today digital communication systems. One of the most difficult problems faced by engineers is to transmit data at sufficiently high rates through fading channels. This is the main motivation for the research presented herein. In this thesis, we investigate a...
This dissertation has two objectives. The first objective is to determine where best to situate the study of mentoring (i.e. the 'making of scientists') on the landscape of the history of science and science studies. This task is accomplished by establishing mentoring studies as a link between the robust body...
Automatic painterly rendering systems have been proposed but they opted for selecting a single style to generate paintings from images, which lacks the ability of creatively using multiple styles to focus important objects and deemphasize unimportant part of the scenes. We provide a multi-style painting framework to
address this issue...
Oxidative stress is recognized as an important underlying factor in the
pathogenesis of many degenerative diseases as well as normal senescence. The
free radicals, reactive oxygen species (ROS) and electrophiles produced during
oxidative stress are capable of modifying nucleic acids, lipids and proteins. There
are a variety of oxidative modifications...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
Ocean Wave Energy Converters (WECs) operating on the water surface are subject to storms and other extreme events. In particular, high and steep waves, especially breaking waves, are likely the most dangerous to WECs. A method for quantifying the breaking severity of waves is presented and applied to wave data...
The various solution-based processes, spin coating, inkjet printing, microreactor assisted nanoparticle deposition (MANDTM) and spin-successive ionic layer absorption and reaction (Spin-SILAR) were used to demonstrate thin film electronics and anti-reflective coatings. Several aspects of thin film transistors (TFTs) were tested including a range of temperatures, annealing atmosphere, and deposition methods....
Headwater streams are an integral part of the ecological health of the greater stream network as they provide valuable biological habitat, provide upwards to 95% of total in channel flow, while providing downstream reaches with important constituents such as sediment and woody debris. Small headwater streams are particularly susceptible to...
Short-range wireless communications continually attract interest from both industry and academia, and it is changing our life in every aspect in the last decade. The design of wireless transceivers is the bottleneck for variety applications, due to RF modeling inaccuracy, stringent FCC regulations over the transmitted power spectrum, interference, multi-path...
A distributed system is a network of multiple autonomous computational nodes designed primarily for performance scalability and robustness. The performance of a distributed system depends critically on how tasks and resources are distributed among the nodes. Thus, a main thrust in distributed system research is to design schemes for distributing...
Within the past several years the technology of high-throughput sequencing has transformed the study of biology by offering unprecedented access to life's fundamental building block, DNA. With this transformation's potential a host of brand-new challenges have emerged, many of which lend themselves to being solved through computational methods. From de...
The quality of a digital image pipeline relies greatly on its color reproduction which should at a minimum handle the color constancy, and the final judgment of the excellence of the pipeline is made through subjective observations by humans.
This dissertation addresses a few topics surrounding the color processing of...
This research looks at the use of PowerPoint as an instructional tool for teaching English language learners (ELL) who studied in a language program at a state university in the Pacific Northwest. The purpose of the research was to discover and to explore the perceptions of PowerPoint supported teaching and...
The paper reports on a large-scale demand model for recreational fishing in Michigan. The model is based on the travel cost method and is specified as a four-level nested-logit. Seasonal participation is modeled by repeating the site choice logit over the course of a season. Data on anglers' trips and...
This dissertation describes two different projects. The first is the development of an oral DNA vaccine delivery system for fish. A novel oral DNA vaccine delivery system was developed for Rainbow Trout by combining non-viral vectors (polycationic liposomes or polycationic polymer) to facilitate the DNA vaccine's uptake by cell membranes...
The vascular endothelium is a single cell layer that lines the lumen of the entire vasculature. It is the site of synthesis of nitric oxide (NO), a vasodilatory compound synthesized by endothelial nitric oxide synthase (eNOS). NO causes intracellular calcium sequestration of the vascular smooth muscle cells, relaxing and dilating...
During catalysis the flavoprotein domain of neuronal nitric-oxide synthase (nNOS) shuttles NADPH-derived reducing equivalents from FAD to FMN and then to the P450-heme enabling heme-based oxygen activation and subsequent NO-synthesis. The binding of Ca²⁺-activated calmodulin (Ca²⁺-CaM) to nNOS alleviates inhibition of flavin mediated electron transfer within the diflavin domain, which...
The major purpose of this research was to characterize partially degraded proteins
appearing in the ocular lens during aging and cataract, and to identify the responsible
proteolytic activities. This research is significant, because increased protein
degradation is associated with lens opacification and cataract. Determining the sites
where lens proteins become...
As the aging population continues to grow worldwide, age-related complications are becoming more apparent within the aging population. One of the first age-related complications to become apparent is age-associated memory impairment and it can make the elderly more dependent on caregivers early on. The N-methyl-D-aspartate (NMDA) receptor is important to...
Optimization programming techniques were applied to
develop the least cost formulations for Pacific whiting
surimi-based seafood (PWSBS). To develop the quality
constraint functions, texture and color of whiting surimi
gels were determined by torsion test and colorimeter,
respectively. Whiting surimi gels were produced by heating
at 90°C for 15 min....
Oral administration is the most practical way of vaccination of fish. It has advantages over intraperitoneal injection and immersion methods that include no stressful handling, no interference with routine fish husbandry and antigens can be delivered to the fish in their feed.
An oral antigen delivery system was developed for...
A method for preferred color reproduction with a psychophysical study based upon a real-life scene demonstrated application is presented. A color correction matrix optimization algorithm is first introduced which applies additional hue constraints on top of the CIE delta E magnitude error to emphasize the importance of hue in the...
Cerium oxide nanoparticles were continuously
precipitated from a solution of cerium(III) nitrate and ammonium
hydroxide using a static microchannel T-mixer. Tmixer
synthesis results were compared with synthesis results
from batch precipitation. Findings show that the method of
mixing is important in the ceria precipitation process. Uniform
porous film structures and...
Cryopreservation of adherent cells may be advantageous for cell types that are difficult to
preserve in suspension or when it is necessary to preserve characteristics of the adherent cultured cells. Vitrification is a promising procedure for the preservation of adherent cells that prevents ice crystal formation and the resulting dissociation...
The Plant Ontology (PO;http://www.plantontology.org/" is a publicly available, collaborative effort to develop and maintain a controlled, structured vocabulary ('ontology') of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and...
A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
Multiple drug resistance (MDR) Tuberculosis (TB), leads to increased use of “second-line” drugs; one of the most effective is ethionamide (ETA). ETA is a prodrug metabolized by a mycobacterial flavin-containing monooxygenase (EtaA) as well human flavin-containing monooxygenases (FMOs). Of the five functional FMOs of humans, FMOs 1, 2, and 3...
We explore selected aspects of J.-Y. Parlange’s contributions to hydrological transport of solutes and sediments, including both the laboratory and field scales. At the laboratory scale, he provided numerous approximations for solute transport accounting for effects of boundary conditions, linear and nonlinear reactions, and means to determine relevant parameters. Theory...
The research explored in this thesis helps provide a better understanding of efforts that have been undertaken to more precisely calculate environmental impacts and human health risks, such as energy consumption, carbon footprint, and toxicity, to support environmental sustainability assessment of products. The work is comprised of two research objectives,...
The upper reach of the Hutuo River flows along the Xin-Ding basin and cuts a transverse drainage
through Xizhou Mountain and Taihang Range into the North China Plain. Previous studies showed
that the Xin-Ding basin was occupied by a lake during the Early-Middle Pleistocene. However,
the timing of the paleolake...
Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with...
We are witnessing the rise of the data-driven science paradigm, in which massive amounts of data - much of it collected as a side-effect of ordinary human activity - can be analyzed to make sense of the data and to make useful predictions. To fully realize the promise of this...
Excess fatty acids and sterols are stored as triacylglycerols and sterol esters in
specialized cellular organelles, called lipid droplets. Understanding what determines the cellular
amount of neutral lipids and their packaging into lipid droplets is of fundamental and
applied interest. Using two species of fission yeast, we show that cycling...
In recently years, the finance sector had focused their attention on commerce operation in China.When fisheries farmers decide to increase invent to promote production, they also can't get enough loans because aquaculture is a highest risk sector in agriculture and the commercial banks would prefer others sector in agriculture to...
Hindcast and 21st century winds, simulated by General Circulation Models (GCMs), were used to drive global- and regional-scale spectral wind-wave generation models in the Pacific Ocean Basin to assess future wave conditions along the margins of the North American west coast and Hawaiian Islands. Three-hourly winds simulated by four separate...
The design of mobile wireless devices has always focused on reducing power, area, and cost. This dissertation proposes two techniques that are leveraged to save power and area and therefore cost. The first techniques reduces the noise in the receiver and results in a relaxed power requirement. The second technique...
Limnology is undergoing a transition to high-throughput -omic analysis of freshwater
bacterial communities. An important first step in making the transition is to
characterize several genomes that can be used as references to guide metagenome
assembly and analysis. Here I characterize four new freshwater cyanobacterial
genomes, a pair of lake...
While monocytes are vital for host defense against pathogens, in cases of non-resolving inflammation, monocytes and their differentiated progeny can secrete tissue-damaging factors, present auto-antigens, and promote the inflammatory response. In this study, a systems biology approach was used to map human monocyte gene regulatory regions by integrating expression quantitative...
Two methanotrophs, M. trichosporium OB3b and M. buryatense 5GB1, were encapsulated using two methods to investigate the potential of methane conversion for biofuel production. Ca-alginate and low melt agarose were used to immobilize the methanotrophs for batch and continuous flow column testing. Varying protein concentrations, residence times, and immobilization methods...