Approximate string matching is commonly used to align genetic sequences (DNA
or RNA) to determine their shared characteristics. In contrast with the standard
dynamic programming methods which use local edit distance models, the Walking
Tree heuristic method was created to handle non-local changes, e.g., translocations,
inversions, and duplications, altogether and...
Biologists need tools to see the structural relationships encoded in biological sequences (strings). The Walking Tree heuristics calculate some of these relationships. I have designed and implemented graphic presentations which allow the biologist (user) to see these relations. This thesis contains background information on the biological sequences and some background...
Desktop widget engines have emerged as an alternative for completing simple tasks without the need for a full-blown application or constant user interaction. Widgets can simply display data in a compact and visually appealing manner (such as stock tickers, weather forecasts, and news notifications), or go so far as to...
Streaming media and interactive television viewing experiences are becoming more commonplace with the introduction of services such as Netflix Streaming, the Apple TV, and Google TV aided by the increase adoption of broadband internet. As these services make their way into the living room, and developers struggle to accommodate more...
CP1100/GPIB Interface is an interface between the "General
Purpose Interface Bus", which is an implementation of the Universal
Bus described in IEEE Standard 488-1975, and Unibus. This interface
enables TEKTRONIX CP1100 series controllers to operate
GPIB- compatible instruments connected to the General Purpose
Interface Bus. The designer can now incorporate...
If basic assumptions about how knowledge workers conceptualize and use work units are wrong, then any solutions resting on those assumptions are unlikely to be successful since, instead of decreasing costs, they will lead to increasing them. This paper reports on how knowledge workers understand, use and switch between units...
Participation in physical activity has important health benefits among individuals with disabilities, whereas inactive lifestyles may lead to secondary limiting health conditions. However, few people with disabilities regularly participate in the recommended amount of health-related physical activities. Low rate of participation may be related to low motivation due to interconnected...
A remote Digital Signal Processing (DSP) lab for the Internet is developed to give students the opportunity to work together online with a remotely located Digital Signal Processor (DSP). Students in different locations can work together with the DSP as if they were present in the lab. To make this...
The potential for machine learning systems to improve via a mutually beneficial exchange of information with users has yet to be explored in much detail. Previously, we found that users were willing to provide a generous amount of rich feedback to machine learning systems, and that the types of some...
This thesis describes the implementation of an interface for querying established correspondences between anatomical structures across species. I was the main developer of this query engine, called the Comparative Anatomy Information System. My work involved developing methods to query the knowledge base, perform the specified comparison, display the anatomical hierarchies...