Variation in cheese quality due to geographic location is important to cheese producers, consumers, and retailers on a global level. Understanding the impacts of geographic location of cheese plants may be useful to businesses for marketing, cost reduction, and quality improvement. Many aspects of variation due to geography have been...
Solvent extraction is an integral chemical and biochemical separation process that is drastically intensified in microfluidic systems. A novel high-throughput micro-separator was additively manufactured for the intensification of liquid–liquid separation. The micro-posts array within the flow plate generated a capillary pressure gradient on the non-wetting organic phase, enabling continuous, membrane-free,...
Distributed version control allows developers to manage software evolution among distributed development teams. But it does not eliminate all consistency and concurrency issues, and instead introduces additional complexity when merging code. And resolving merge conflicts is nontrivial when automated merging fails. In such cases, developers are forced to inspect the...
Over time, Open Source Software (OSS) has become indispensable in the creation and upkeep of software products, serving as the fundamental building block for widely used solutions in our daily lives, including applications that enable communication, entertainment, and productivity. A sustainable OSS ecosystem is one that attracts and retains a...
Toxin production by cyanobacterial harmful algal blooms (cyanoHABs) in freshwater systems has lasting ecological and human impacts. Nutrients, light availability, hydrology, and microbial community composition impact the frequency and intensity of toxic cyanoHABs. Climate change will exacerbate toxic cyanoHABs, making real time and predictive monitoring a vital tool for managing...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
"What’s wrong with this AI?" Explainable AI (XAI) researchers are moving beyond explaining an AI’s actions, to helping users detect an AI’s failures. However this detection may not be enough—for actionability, we often need to pinpoint which part failed. We investigate how AAR/AI, a structured assessment process, supports users with...
Analysis of observations on sequential events over time is common in real life. Sequential measurements over time describing the behavior of systems are usually called time series data, which have been collected in a wide range of disciplines. Over the years there have been multiple research areas in studying stochastic...
Energetic resources transferred between distinct habitats or ecosystems, referred to as allochthonous resources, can greatly subsidize consumers in the recipient habitat, and thus influence food web structure and dynamics. Such subsidies may allow the growth of the consumer population to be decoupled from in situ productivity with effects on consumer...