The pulse-coupled oscillator model is widely used to simulate the dynamics of neural systems. For networks with particular internal (Mirollo-Strogatz) dynamics, I will define three broad patterns of collective behaviors found in literature in terms of inter-spike interval (ISI) statistics. These patterns are i) temporally-regular, characterized by all oscillators in...
Nearly 80% of solid tumors, such as melanoma, metastasize via the lymphatic system. The most common form of melanoma is BRAF-mutant melanoma, and additional mutations, such as a PTEN mutation in the PI3K pathway, is required for metastases to occur. Standard therapy includes treatment with small molecules dabrafenib (DAB) and...
In this study, we used a combination of conventional statistical analyses and mechanistic bioenergetics models to understand the potential effects of environmental variability on growth of stream-living fishes in four headwater streams subject to upstream forest harvest. We focused on two common fish consumers in headwater streams in the Pacific...
Phytophthora lateralis is the causal agent of cedar root rot, a fatal forest pathogen whose principal host is Chamaecyparis lawsoniana (Port-Orford-cedar), a predominantly riparian-restricted endemic tree species of ecological, economical, and cultural importance to coastal Oregon and California. Local scale distribution of P. lateralis is thought to be associated with...
Cereal and commercial grass-seed straws are abundant plant biomass materials that are currently being considered for application in industrial processes aimed at the production of biofuels, biomaterials, and biochemicals. The carbohydrate fraction of these straws is of particular interest in this context due to its chemical functionality and relative ease...
The growing population of Oregon’s Willamette River Basin places an increasing demand on the basin’s surface waters. Watershed-scale research addressing spatial trends of dissolved nitrogen (DN) and its relationship with landuse and soil N dynamics, such as N mineralization, is sparse in the Willamette Basin. I measured DN along 124...
A method based on fatty acid (FA) analysis is used to profile microbial community structure (MCS). Various extraction protocols are available, which alter the types of FAs extracted from soils. The more time consuming but widely used protocol extracts only FAs from phospholipids (PLFA). This technique is desirable because PLFAs...
The Calapooia River, a major tributary of the Willamette River in western Oregon, is a watershed typical of many found in the Willamette Basin. Public and private forested lands occur in the steep Upper Zone of the watershed, mixed forest and agriculture lands are found in the Middle Zone, and...
Runoff from agricultural lands into Upper Klamath Basin rivers and lakes can
cause water quality problems affecting fish and wildlife. Excessive eutrophication
in Upper Klamath Lake is linked to high nutrient input (particularly phosphorus)
stemming from both lake sediments and watershed tributaries.
On a unit area load basis the Wood...
The cultivated sunflower (Helianthus annuus L., x=17) is one of the most important annual oilseed crops in the world. There are very few publicly shared sequence-based DNA markers and genetic maps in sunflower, even though molecular DNA markers and genetic maps have become widely used in all areas of genetic...