The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Relieving phosphorus loading is a key management tool for controlling Lake Erie eutrophication. During the
1960s and 1970s, increased phosphorus inputs degraded water quality and reduced central basin hypolimnetic
oxygen levels which, in turn, eliminated thermal habitat vital to cold-water organisms and contributed to the
extirpation of important benthic macroinvertebrate...
The vegetation in Yosemite National Park changed during the 20th century and may change in the 21st century in response to climate change. Vegetation surveys made during the 1930s and the 1990s provide benchmark records separated by 60 years. This study uses the MC1 dynamic global vegetation model to forecast...
Carbon and energy fluxes were measured with the eddy covariance technique
above two semi-arid ecosystems, ponderosa pine and juniper/sagebrush, located in
central Oregon. The two ecosystems have low LAI and a very open canopy structure.
The energy closure was ~70-80% at both ecosystems, equivalent to an imbalance of
150-250 W...