Intraseasonal oscillations in the atmosphere-ocean system can affect weather patterns and regional ecosystems. In turn, these oscillations can be affected by climate variability, resulting in additive and/or non-linear responses of regional ecosystems to climate forcing. In the Northern California Current, a strong correlation was identified between the location of the...
Early seral forests regenerating from stand-replacing disturbances provide unique habitat for many species in productive, temperate forest landscapes and contribute to supporting biodiversity. Population declines in some species associated with early seral forests have prompted concerns about the conservation of these habitats, particularly the characteristic structural and compositional complexity associated...
Aromatic hydrocarbons represent a large class of environmental contaminants that have a broad range of structures, physicochemical properties, and toxicities. Arising from the burning of organic matter, particularly fossil fuels, they are both widespread and abundant in all environmental compartments. Both monoaromatic hydrocarbons (BTEX) and polycyclic aromatic hydrocarbons (PAHs) are...
River ecosystems throughout the arid southwestern U.S. are imperiled. Water management infrastructure, climate change, unsustainable water use, and political conflict harm the region's aquatic and riparian ecosystems. This case study surveys one such desert river, an endemic fish species, and conservation efforts in southwestern Utah. The analysis focuses on the...
Bibliographia Bopyridarum is prepared and maintained by John Markham, Arch Cape, Oregon, USA. Any reports of errors or omissions are greatly appreciated. Please contact Dr. Markham with suggestions: jmarkham@seasurf.net This file is updated annually.
Within the Pacific Northwest, USA, root diseases of conifers are a major forest health concern. These diseases are primarily caused by basidiomycete fungi. These fungal associates play a vital role in carbon sequestration but also have a significant negative economic impact within the timber industry. As a result, research on...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Textiles (including basketry, cordage, woven, knotted, or plaited products) make up a considerable portion of the perishable archaeological record in dry caves of the northern Great Basin region, much of which is created from plants and plant fibers. The archaeological study of precontact textiles greatly informs our understanding of how...
Prototyping is a crucial step in product design and development, but it is also known as the highest sunk cost. The top 20 Research and Development (R&D) department spends 142 billion dollars, yet 40 to 46 percent of this money goes into developing products that cannot even make to the...
Consistent with its charge under Oregon House Bill 3543, the Oregon Climate Change Research Institute (OCCRI) conducts a biennial assessment of the state of climate change science, including biological, physical, and social science, as it relates to Oregon and the likely effects of climate change on Oregon. This fifth Oregon...