Index Catalog // ScholarsArchive@OSU

DNA fingerprinting and genome mapping in meadowfoam

Creator:: Katengam, Sureeporn
Abstract:: Marker information in the new oilseed crop, meadowfoam, is limited. Molecular markers to facilitate meadowfoam breeding and cultivar improvement are not available. The knowledge of genetic relationships among recent germplasm is not known. The objectives of this study were (i) to gain an understanding of genetic diversity and relationship patterns...
Resource Type:: Dissertation
Full Text:: DNA Fingerprinting and Genome Mapping in Meadowfoam AN

Mapping of quantitative trait loci for malting quality in a winter X spring barley (Hordeum vulgare, L.) cross

Creator:: Oziel, Adeline M.
Abstract:: Making quality and winterhardiness in barley are "ultimate" phenotypes composed of component, quantitatively inherited traits. A 69-point genome map of the seven chromosomes of barley was used, in conjunction with multi-environment phenotypes for grain yield and malting quality, to determine the chromosome locations of quantitative trait loci (QTLs). A combined...
Resource Type:: Masters Thesis
Full Text:: "ultimate" phenotypes composed of component, quantitatively inherited traits. A 69-point genome map of the

Genomic Resource Development for European Hazelnut (Corylus avellana L.)

Creator:: Rowley, Erik R.
Abstract:: European hazelnut (Corylus avellana L.) is an important crop Oregon's Willamette Valley, producing 99% of the hazelnuts grown in North America and brings over US $60 million dollars to the region annually. Hazelnuts are rich in fiber and vitamins, as well in demand by consumers due to their popularity as...
Resource Type:: Dissertation
Full Text:: sequencing technologies to sequence the hazelnut genome, allowing for trait and marker discovery on a

Simple sequence repeat marker development and fingerprinting in Cuphea lanceolata Ait. and C. viscosissima Jacq

Creator:: Karmarkar, Vidyadhar M.
Abstract:: Microsatellites or simple sequence repeats (SSRs) are highthroughput sequence based DNA markers that have been exploited as tools for measuring genetic distance and diversity in evolutionary studies, protection of intellectual property, genetic resource conservation management, cultivar identification and molecular breeding of crop plants. We isolated and sequenced 1095 clones from...
Resource Type:: Masters Thesis
Full Text:: . Summary of SSR marker development ................. 22. 3. Two hundred and seventy one SSR markers

Toward genome-enabled mycology

Creator:: Hibbett, David S., Stajich, Jason E., and Spatafora, Joseph W.
Abstract:: Genome-enabled mycology is a rapidly expanding field that is characterized by the pervasive use of genome-scale data and associated computational tools in all aspects of fungal biology. Genome-enabled mycology is integrative and often requires teams of researchers with diverse skills in organismal mycology, bioinformatics and molecular biology. This issue of...
Resource Type:: Article
Full Text:: Toward genome-enabled mycology Toward genome-enabled

Identification of quantitative trait loci underlying kernel extra-softness and related traits by linkage and association mapping in wheat (Triticum aestivum L.)

Creator:: Wang, Guomei
Abstract:: Kernel hardness (KHA) is a major factor determining break flour yield (BFY) and end-use quality of common wheat (Triticum aestivum L.). Within the soft wheat class, genotypes with consistently softer grains than common soft wheat are considered to be 'extra-soft'. In addition, 'extra-soft' wheats have greater BFY than common soft...
Resource Type:: Dissertation
Full Text:: individual QTL ranged from 5.8 to 47.6%. Among five QTL identified for KHA, the two most

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Creator:: Mellbye, Brett L.
Abstract:: High-throughput culturing (HTC) consisting of extinction culturing in autoclaved seawater has led to the isolation and characterization of many novel strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC method. Phylogenetic analysis based on 16S rRNA gene sequence showed that this strain...
Resource Type:: Honors College Thesis
Full Text:: followed by genome sequencing and interpretation, proteomic analysis by liquid chromatography/tandem mass

Comparative Genomics of Freshwater Bloom-Forming Cyanobacteria and Associated Organisms

Creator:: Driscoll, Connor B.
Abstract:: The advent of improved DNA sequencing technologies has allowed the analysis of various microbial communities. Bloom-forming freshwater cyanobacteria can produce toxins and taste-and-odor compounds that can negatively affect drinking water supplies. Here, I have employed second- and third-generation sequencing technologies to characterize bloom-forming freshwater cyanobacterial genomes and their associated heterotrophic...
Resource Type:: Dissertation
Full Text:: -forming cyanobacteria within the Nostocaceae family 139 6.3 Chapter 4: Genome sequencing of two novel Ma

The Complete Mitochondrial Genome of the Geophilomorph Centipede Strigamia maritima

Creator:: Robertson, Helen E., Lapraz, François, Rhodes, Adelaide C., and Telford, Maximilian J.
Abstract:: Strigamia maritima (Myriapoda; Chilopoda) is a species from the soil-living order of geophilomorph centipedes. The Geophilomorpha is the most speciose order of centipedes with over a 1000 species described. They are notable for their large number of appendage bearing segments and are being used as a laboratory model to study...
Resource Type:: Article

Assessing De Novo transcriptome assembly metrics for consistency and utility

Creator:: O’Neil, Shawn T. and Emrich, Scott J.
Abstract:: Background: Transcriptome sequencing and assembly represent a great resource for the study of non-model species, and many metrics have been used to evaluate and compare these assemblies. Unfortunately, it is still unclear which of these metrics accurately reflect assembly quality. Results: We simulated sequencing transcripts of Drosophila melanogaster. By assembling...
Resource Type:: Article
Full Text:: ://www.biomedcentral.com/1471-2164/14/465 overall assembly size were simply repurposed fromwhole- genome assembly

ScholarsArchive@OSU

DNA fingerprinting and genome mapping in meadowfoam

Mapping of quantitative trait loci for malting quality in a winter X spring barley (Hordeum vulgare, L.) cross

Genomic Resource Development for European Hazelnut (Corylus avellana L.)

Simple sequence repeat marker development and fingerprinting in Cuphea lanceolata Ait. and C. viscosissima Jacq

Toward genome-enabled mycology

Identification of quantitative trait loci underlying kernel extra-softness and related traits by linkage and association mapping in wheat (Triticum aestivum L.)

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Comparative Genomics of Freshwater Bloom-Forming Cyanobacteria and Associated Organisms

The Complete Mitochondrial Genome of the Geophilomorph Centipede Strigamia maritima

Assessing De Novo transcriptome assembly metrics for consistency and utility

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