The Arabidopsis Information Portal (AIP), a resource expected to provide access to all community data and combine outputs into
a single user-friendly interface, has emerged from community discussions over the last 23 months. These discussions began
during two closely linked workshops in early 2010 that established the International Arabidopsis Informatics...
Invasive plants have the capacity to transform landscapes and alter ecosystem function, causing significant economic and ecological damage. These effects include displacement and reduction of native flora and fauna, altered fire regimes, modification of biotic and abiotic soil properties, as well as local, regional, and global economic impacts. With such...
For tuberizing crops like potato (Solanum tuberosum), the geocaulosphere, or the zone of soil in contact with and influenced by the tuber, is a distinct sphere of microbial life and represents an important interface between the potato crop and the soil environment. Upon potato harvest, specific geocaulosphere soil called tare...
Gene regulation is a complex mechanism that controls the spatial and temporal expression of genes in a living cell. My dissertation studies focus on two problems. First, tissue-specific gene expression prediction from DNA sequence and chromatin state, and second, the accurate discovery of small over-represented regulatory circuits in gene regulatory...