Marine bacterioplankton play an important role in global elemental cycles because they return carbon dioxide and nutrients to the biosphere as they reduce organic matter. Furthermore, marine bacterioplankton are not uniformly active, and subpopulations of the in situ community may be more or less active at any given time. Defining...
Candidatus Pelagibacter ubique is the first cultured representative of the SAR11 clade, a clade that is found throughout the oceans and accounts for approximately 25% of all bacterial cells [1]. It has a streamlined genome that is the smallest of any known free-living organism. In this study the complete genome...
A new high-throughput culturing (HTC) method using a low nutrient
heterotrophic medium (LNHM) has led to the isolation of many novel strains of
oligotrophic bacteria from marine ecosystems. Four strains belonging to a single
dade, HTCC2151, HTCC218OT, HTCC2178T and HTCC2188T, were isolated
from the coast of Oregon by the HTC...
The phylogenetic diversity of two continental shelf picoplankton
communities was examined by analyzing SSU (16S) ribosomal RNA (rRNA)
genes amplified from environmental DNA with bacterial-specific primers and
the polymerase chain reaction (PCR). Picoplankton populations collected from
the pycnocline (10 m) over the eastern continental shelf of the United States
near...
Knowledge of the pelagic organisms in vast areas of the open ocean is very limited. This is particularly true of the small nekton or swimming forms such as fishes, squid, prawns and euphausiids, which are important as intermediate animals in the food chain and are preyed upon by species such...
The Oregon upwelling system is a region of high biomass and primary
productivity as well as strong mesoscale variability. In order to examine the
interaction of physical forcing and ecosystem dynamics, four 3-week sampling
cruises were conducted in the Oregon upwelling system as part of the Northeast
Pacific Global Ocean...
Discrete layers of phytoplankton and zooplankton were observed over the Oregon continental shelf in summer and fall of 2001 and summer 2002 using optical and acoustical technologies and a pump sampling system. Layers of phytoplankton had steep vertical gradients which were associated with gradients in density and local peaks in...
This dissertation focuses on the importance of pelagic subsidies in the Northeast Pacific to rocky shore community regulation. My results document the patterns of pelagic subsidy supply, determine if those subsidies are correlated with community structure, and examine if community regulation differs between areas of high- and low-subsidies. Understanding how...
In September 1988, the U.S. Secretary of the Interior and the Governor of Oregon announced the creation of the joint state-federal Placer Minerals Technical Task Force. The group was charged with performing an analysis of the potential economic and environmental aspects of placer mineral mining in the nearshore waters of...
The high productivity of Eastern Boundary Upwelling Ecosystems (EBUE), some of the most productive ecosystems in the globe, is attributed to the nutrient rich waters brought up through upwelling. Climate change scenarios for coastal upwelling systems, predict an intensification of coastal upwelling winds. Associated with intensification in upwelling are biogeochemical...