This paper develops a count data model of target species and bycatch
production for an arbitrary number of species that handles correlation
between species and over time. The model is applied to a large observer
dataset for fishing trips taken from 1990 to 2008 for roughly 150 vessels
participating in...
The US Magnuson-Stevens Act authorizes the use of onboard observers to
monitor commercial fisheries catch and bycatch (PFMC 2003). A question
of concern in implementing an observer program is that of the appropriate
level of observer coverage. Current practice varies by fishery; for example,
the California-Oregon drift gillnet fishery for...
A principle U.S. fisheries management concern is ensuring compliance with Endangered Species Act requirements to limit incidental takes of listed species to levels which do not result in potential jeopardy to existing population stocks. Part of the risk assessment process involves an analysis of historic takes (bycatch) of ESA-listed species...
Conservation impacts on protected sea turtles and marine mammals are a longstanding concern in U.S. swordfish fisheries, including the Hawaii shallow-set longline (SSLL) fishery and the west coast drift-gillnet (DGN) fishery. Observer records for these fisheries document a history of rare-event interactions with large cetaceans and endangered sea turtles. Since...
The phylogenetic diversity of two continental shelf picoplankton
communities was examined by analyzing SSU (16S) ribosomal RNA (rRNA)
genes amplified from environmental DNA with bacterial-specific primers and
the polymerase chain reaction (PCR). Picoplankton populations collected from
the pycnocline (10 m) over the eastern continental shelf of the United States
near...
Oligotrophic bacteria are adapted to low nutrient concentrations. As most of the ocean is oligotrophic (low in nutrients), oligotrophic bacteria thrive in the ocean and make up the majority of planktonic cells. Because of this, oligotrophs are crucial to oceanic nutrient cycles. However, marine oligotrophic bacteria are dwarfed by their...
An integrated sampling and gamma ray spectrometry system has
been developed for analysis of TRIGA reactor primary cooling water.
A microcomputer controls pumps and valves using BASIC and assembly
language programs to pump 300 ml liquid samples into a reference
geometry surrounding a Ge(Li) detector. Gamma ray spectra are
acquired...
Candidatus Pelagibacter ubique is the first cultured representative of the SAR11 clade, a clade that is found throughout the oceans and accounts for approximately 25% of all bacterial cells [1]. It has a streamlined genome that is the smallest of any known free-living organism. In this study the complete genome...
University deployed two arrays of three sonobuoys over the Blanco
fracture zone and two arrays of four sonobuoys over the Gorda ridge
to detect and locate microearthquakes. Microearthquake activity predicted
by plate tectonic theory for the Blanco fracture zone and Gorda
ridge was observed by these arrays to originate from...