Data from nuclear ribosomal internal transcribed spacer regions (nrITS) and chloroplast DNA
(cpDNA) have failed to resolve phylogenetic relationships in Pinus. To provide greater
interspecific resolution, five low-copy nuclear genes were developed from mapped conifer anchor
loci. Four genes were sequenced from species representing all Pinus subsections. Individual loci
do...
Sequence data from nrITS and cpDNA have failed to fully resolve phylogenetic relationships among Pinus species. Four low‐copy nuclear genes, developed from the screening of 73 mapped conifer anchor loci, were sequenced from 12 species representing all subsections. Individual loci do not uniformly support either the nrITS or cpDNA hypotheses...
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
Full Text:
Liston, Peter J. Maughan, Matthew Parks, John V. Syring, and
Joshua Udall. 2012. Targeted enrichment
Whitebark pine (Pinus albicaulis) inhabits an expansive range in western North America, and it is a keystone species of subalpine environments. Whitebark is susceptible to multiple threats – climate change, white pine blister rust, mountain pine beetle, and fire exclusion – and it is suffering significant mortality range-wide, prompting the...
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
Full Text:
, Aaron Liston, Peter J. Maughan, Matthew Parks, John V. Syring, and Joshua Udall. 2012. Targeted
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
Full Text:
, Peter J. Maughan, Matthew Parks, John V. Syring, and
Joshua Udall. 2012. Targeted enrichment strategies
BACKGROUND: As it becomes increasingly possible to obtain DNA sequences of orthologous genes from diverse sets
of taxa, species trees are frequently being inferred from multilocus data. However, the behavior of many methods for
performing this inference has remained largely unexplored. Some methods have been proven to be consistent given...
Full Text:
, M., Syring, J., Eckert, A. J., Liston, A., Cronn, R., Neale, D. B., &
Rosenberg, N. A. (2014). An
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue to redefine the limits of what can be accomplished in comparative plant biology. Even with recent achievements, however, plant genomes present obstacles that can make it difficult to execute large-scale population and phylogenetic studies on next-generation...
Full Text:
J. KNAUS 2 , AARON LISTON 3 , PETER J. MAUGHAN 4 ,
MATTHEW PARKS 3 , JOHN V. SYRING
BACKGROUND: As it becomes increasingly possible to obtain DNA sequences of orthologous genes from diverse sets
of taxa, species trees are frequently being inferred from multilocus data. However, the behavior of many methods for
performing this inference has remained largely unexplored. Some methods have been proven to be consistent given...
BACKGROUND: As it becomes increasingly possible to obtain DNA sequences of orthologous genes from diverse sets
of taxa, species trees are frequently being inferred from multilocus data. However, the behavior of many methods for
performing this inference has remained largely unexplored. Some methods have been proven to be consistent given...
