Raspberry bushy dwarf virus (RBDV) is the sole member of the idaeovirus genus of plant viruses. It is a pollen-borne virus that economically impacts both red and black raspberries worldwide. Three strains of the bipartite RBDV have been reported. The common strain found in North America, South America, Australia, New...
Confederate governors Joseph Brown and Zebulon Vance have long been considered obstructionists to the Confederate cause through their steadfast commitment to states' rights. States' Rights Nationalists throws in its own interpretation of these two men into the historiographical conversation taken on by well-known Civil War historians like Frank Owsley, Albert...
One taphonomic problem plaguing archaeologists and physical anthropologists, whether their research is in North American cultures or hominid sites in Africa, is the difficulty in distinguishing bone altered by burning and heating from bone altered by soil processes. Archaeologists working to understand the recent prehistory of the Southern Oregon Coast...
A new functional gene database, FOAM (Functional Ontology Assignments for Metagenomes), was developed to screen environmental metagenomic sequence datasets. FOAM provides a new functional ontology dedicated to classify gene functions relevant to environmental microorganisms based on Hidden Markov Models (HMMs). Sets of aligned protein sequences (i.e. ‘profiles’) were tailored to...
Foliar fungi – pathogens, endophytes, epiphytes – form taxonomically diverse communities that affect plant health and productivity. The composition of foliar fungal communities is variable at spatial scales both small (e.g., individual plants) and large (e.g., continents). However, few studies have focused on how environmental factors and host plant traits...
A new functional gene database, FOAM (Functional
Ontology Assignments for Metagenomes), was developed
to screen environmental metagenomic sequence
datasets. FOAM provides a new functional
ontology dedicated to classify gene functions relevant
to environmental microorganisms based on Hidden
Markov Models (HMMs). Sets of aligned protein
sequences (i.e. ‘profiles’) were tailored to...
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Mackelprang1,3, David D. Myrold4,
Ari Jumpponen2, SusannahG. Tringe3, Elizabeth Holman1, Konstantinos
Ocean deoxygenation is predicted to increase in severity over the next few decades, posing a threat to marine life and fishing economies. Improved predictions of ocean deoxygenation depend on a better understanding of the biogeochemical mechanisms that underly this process. Within the realm of biogeochemical mechanisms, this project specifically investigated...
Estimates of species' vital rates and an understanding of the factors affecting those parameters over time and space can provide crucial information for management and conservation. We used mark–recapture, reproductive output, and territory occupancy data collected during 1985–2013 to evaluate population processes of Northern Spotted Owls (Strix occidentalis caurina) in...