Index Catalog // ScholarsArchive@OSU

Genetic and Functional Diversification of Small RNA Pathways in Plants

Creator:: Xie, Zhixin, Johansen, Lisa K., Gustafan, Adam M., Kasschau, Kristin D., Lellis, Andrew D., Zilberman, Daniel, Jacobsen, Steven E., and Carrington, James C.
Abstract:: Multicellular eukaryotes produce small RNA molecules (approximately 21–24 nucleotides) of two general types, microRNA (miRNA) and short interfering RNA (siRNA). They collectively function as sequence-specific guides to silence or regulate genes, transposons, and viruses and to modify chromatin and genome structure. Formation or activity of small RNAs requires factors belonging...
Resource Type:: Article
Full Text:: State University, Corvallis, Oregon, United States of America, 2 Department of Molecular, Cell, and

Online access to specimen images and associated literature: a productive partnership between the Oregon State University Herbarium and Library

Creator:: Liston, Aaron, Boock, Michael, Chau, May, Reese, Terry, and Mitchell, Katie
Abstract:: Presentation delivered at the SPNHC - NSCA Joint Meeting, 23-27 May 2006, in Albuquerque, New Mexico.
Resource Type:: Presentation
Full Text:: literature: A productive partnership between the Oregon State University Herbarium and Library Aaron

Final report [year one]: Control of Brachypodium sylvaticum and restoration of rare native upland prairie habitat at Butterfly Meadows, Benton County ODA 1342 GR

Creator:: Clark, Deborah Louise, 1950-, Hammond, Paul, Johnson, Deborah, Kaye, Tom, Kelpsas, Bruce, Pfund, Fred, Vomocil, Marc, and Wilson, Mark V.
Abstract:: Our project goal is to protect and restore rare Willamette Valley upland prairie habitat at Butterfly Meadows (Benton County) from invasion by the noxious weed Brachypodium sylvaticum (false brome). Native prairies, which once dominated the landscape of the Willamette Valley, are considered among the rarest of Oregon’s ecosystems and are...
Resource Type:: Technical Report
Full Text:: Oregon State Weed Board Oregon Department of Agriculture Salem, OR June 27, 2003

Final report, year two: Control of Brachypodium sylvaticum and restoration of rare native upland prairie habitat at Butterfly Meadows, Benton County ODA 1514 GR

Creator:: Clark, Deborah Louise, 1950-, Blakeley-Smith, Matt, Hammond, Paul, Johnson, Deborah, Kaye, Tom, Kelpsas, Bruce, Pfund, Fred, Vomocil, Marc, and Wilson, Mark V.
Abstract:: Our project goal is to protect and restore rare Willamette Valley upland prairie habitat at Butterfly Meadows (Benton County) from invasion by the noxious weed Brachypodium sylvaticum (false brome). Native prairies, which once dominated the landscape of the Willamette Valley, are considered among the rarest of Oregon’s ecosystems and are...
Resource Type:: Technical Report
Full Text:: Oregon State University 2 Private Consultant 3 Institute for Applied Ecology 4 Helena Chemical

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Creator:: Kasschau, Kristin D., Fahlgren, Noah, Chapman, Elisabeth J., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., and Carrington, James C.
Abstract:: Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class of 24-nucleotide (nt) short interfering RNAs (siRNAs), were done for wild-type Arabidopsis thaliana and silencing pathway mutants...
Resource Type:: Article
Full Text:: Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America, 2

Illustration List for Macrolichens of the Pacific Northwest, 2nd edition (2009)

Creator:: McCune, Bruce and Geiser, Linda
Abstract:: References are given for illustrations in the second edition of Macrolichens of the Pacific Northwest. For each illustration, we list the photographer or illustrator, the specimen photographed, where the specimen was from, collector, collection number, and herbarium.
Resource Type:: Other
Full Text:: the Pacific Northwest, 2nd edition (2009) Bruce McCune and Linda Geiser, Oregon State University Press

Species Changes in Macrolichens of the Pacific Northwest, 2nd edition (2009)

Creator:: McCune, Bruce and Geiser, Linda
Abstract:: We list additions, deletions, and other changes in species included in Macrolichens of the Pacific Northwest, 2nd edition, as compared to the 1st edition. The changes resulted from discoveries of range extensions into the Pacific Northwest, descriptions of new species, taxonomic revisions, and nomenclatural revisions.
Resource Type:: Other
Full Text:: Geiser Oregon State University Press Totals: 117 new species added 53 name changes 1 species

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

Creator:: Fahlgren, Noah, Howell, Miya D., Kasschau, Kristin D., Sullivan, Christopher M., Cumbie, Jason S., Givan, Scott A., Law, Theresa F., Grant, Sarah R., Dangl, Jeffrey L., and Carrington, James C.
Abstract:: In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosperms and the mosses, whereas many others are more recently evolved. Here, we use deep...
Resource Type:: Article
Full Text:: Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Creator:: Bruskiewich, Richard, Senger, Martin, Davenport, Guy, Ruiz, Manuel, Rouard, Mathieu, Hazekamp, Tom, Takeya, Masaru, Doi, Koji, Satoh, Kouji, Costa, Marcos, Simon, Reinhard, Balaji, Jayashree, Akintunde, Akinnola, Mauleon, Ramil, Wanchana, Samart, Shah, Trushar, Anacleto, Mylah, Portugal, Arllet, Ulat, Victor Jun, Thongjuea, Supat, Braak, Kyle, Ritter, Sebastian, Dereeper, Alexis, Skofic, Milko, Rojas, Edwin, Martins, Natalia, Pappas, Georgios, Alamban, Ryan, Almodiel, Roque, Barboza, Lord Hendrix, Detras, Jeffrey, Manansala, Kevin, Mendoza, Michael Jonathan, Morales, Jeffrey, Peralta, Barry, Valerio, Rowena, Zhang, Yi, Gregorio, Sergio, Hermocilla, Joseph, Echavez, Michael, Yap, Jan Michael, Farmer, Andrew, Schiltz, Gary, Lee, Jennifer, Casstevens, Terry, Jaiswal, Pankaj, Meintjes, Ayton, Wilkinson, Mark, Good, Benjamin, Wagner, James, Morris, Jane, Marshall, David, Collins, Anthony, Kikuchi, Shoshi, Metz, Thomas, McLaren, Graham, and van Hintum, Theo
Abstract:: The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the...
Resource Type:: Article
Full Text:: within the middleware architecture. These interfaces are collected into a core Java library called “Pan

Demographic analysis of Erigeron decumbens var. decumbens, an endangered plant species of the Willamette Valley, Oregon: 1999 Field Studies

Creator:: Clark, Deborah Louise, 1950-
Abstract:: Erigeron decumbens var. decumbens, known only from the Willamette Valley of western Oregon, is listed as Endangered by the U.S. Fish and Wildlife Service and by the state of Oregon. In 1993 a long-term population monitoring program for Erigeron decumbens var. decumbens was initiated at Baskett Slough National Wildlife Refuge...
Resource Type:: Technical Report
Full Text:: , is listed as Endangered by the U.S. Fish and Wildlife Service and by the state of Oregon. In 1993

ScholarsArchive@OSU

Genetic and Functional Diversification of Small RNA Pathways in Plants

Online access to specimen images and associated literature: a productive partnership between the Oregon State University Herbarium and Library

Final report [year one]: Control of Brachypodium sylvaticum and restoration of rare native upland prairie habitat at Butterfly Meadows, Benton County ODA 1342 GR

Final report, year two: Control of Brachypodium sylvaticum and restoration of rare native upland prairie habitat at Butterfly Meadows, Benton County ODA 1514 GR

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

Illustration List for Macrolichens of the Pacific Northwest, 2nd edition (2009)

Species Changes in Macrolichens of the Pacific Northwest, 2nd edition (2009)

High-Throughput Sequencing of Arabidopsis microRNAs : Evidence for Frequent Birth and Death of MIRNA Genes

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science

Demographic analysis of Erigeron decumbens var. decumbens, an endangered plant species of the Willamette Valley, Oregon: 1999 Field Studies

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