Index Catalog // ScholarsArchive@OSU

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Creator:: Schmickl, Roswitha, Liston, Aaron, Zeisek, Vojtěch, Oberlander, Kenneth, Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Dreyer, Léanne L., and Suda, Jan
Abstract:: Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
Resource Type:: Article
Full Text:: ., Dreyer, L. L. and Suda, J. (2016), Phylogenetic marker development for target enrichment from

Gramene: a resource for comparative grass genomics

Creator:: Ware, Doreen, Jaiswal, Pankaj, Ni, Junjian, Pan, Xiaokang, Chang, Kuan, Clark, Kenneth, Teytelman, Leonid, Schmidt, Steve, Zhao, Wei, Cartinhour, Samuel, McCouch, Susan, and Stein, Lincoln
Abstract:: Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understanding other agronomically important grass genomes. Gramene replaces the existing AceDB database ‘RiceGenes’ with a relational database based on...
Resource Type:: Article
Full Text:: Ware, Pankaj Jaiswal1, Junjian Ni1, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steve

Gramene: Development and Integration of Trait and Gene Ontologies for Rice

Creator:: Jaiswal, Pankaj, Ware, Doreen, Ni, Junjian, Chang, Kuan, Zhao, Wei, Schmidt, Steven, Pan, Xiaokang, Clark, Kenneth, Teytelman, Leonid, Cartinhour, Samuel, Stein, Lincoln, and McCouch, Susan
Abstract:: Gramene (http://www.gramene.org/) is a comparative genome database for cereal crops and a community resource for rice. We are populating and curating Gramene with annotated rice (Oryza sativa) genomic sequence data and associated biological information including molecular markers, mutants, phenotypes, polymorphisms and Quantitative Trait Loci (QTL). In order to support queries...
Resource Type:: Article
Full Text:: , P., Ware, D., Ni, J., Chang, K., Zhao, W., Schmidt, S., ... & McCouch, S. (2002). Gramene

Kinetic Mechanism of the Hydrogen-Oxidizing Hydrogenase from Soybean Nodule Bacteroids

Creator:: Arp, Daniel J. and Burris, Robert H.
Abstract:: The kinetic mechanism of the unidirectional H2-oxidizing hydrogenase from soybean nodule bacteroids has been investigated with highly purified enzyme. Measurements of the K, for H2 vary from 0.97 to 2.6 pM, and the K,,, for methylene blue varies from 6 to 17 pM. With H2 and methylene blue as substrates,...
Resource Type:: Article
Full Text:: Hydrogen-Oxidizing Hydrogenase from Soybean Nodule Bacteroids? Daniel J. Arp and Robert H. Burris

Kinetic and Spectroscopic Analysis of the Inactivating Effects of Nitric Oxide on the Individual Components of Azotobacter vinelandii Nitrogenase

Creator:: Hyman, Michael R., Seefeldt, Lance C., Morgan, Vance, Arp, Daniel J., and Mortenson, Leonard E.
Abstract:: The effects of nitric oxide (NO) on the individual components of Azotobacter vinelandii nitrogenase have been examined by kinetic and spectroscopic methods. Incubation of the Fe protein (Av2) for 1 h with stoichiometries of 4- and 8-fold molar excesses of NO to Av2 dimer resulted in a complete loss of...
Resource Type:: Article
Full Text:: vinelandii Nitrogenasef Michael R. Hyman,* Lance C. Seefeldt,$ T. Vance Morgan,$ Daniel J. Arp,* and

Invaded range of the blackberry pathogen Phragmidium violaceum in the Pacific Northwest of the USA and the search for its provenance

Creator:: Morin, Louise, Gomez, Don R., Evans, Katherine J., Neill, Tara M., Mahaffee, Walt F., and Linde, Celeste C.
Abstract:: Field surveys in 2006 confirmed that the exotic rust fungus Phragmidium violaceum was widespread on Rubus armeniacus and Rubus laciniatus in the Pacific Northwest of the USA. The origin and dispersal pattern of this obligate biotrophic pathogen in the USA were investigated by comparing the genetic diversity and structure of...
Resource Type:: Article
Full Text:: Louise Morin • Don R. Gomez • Katherine J. Evans • Tara M. Neill • Walt F. Mahaffee • Celeste C. Linde

Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors

Creator:: Lakatos, Lóránt, Csorba, Tibor, Pantaleo, Vitantonio, Chapman, Elisabeth J., Carrington, James C., Liu, Yu-Ping, Dolja, Valerian V., Calvino, Lourdes Fernández, López-Moya, Juan José, and Burgyán, József
Abstract:: RNA silencing is an evolutionarily conserved system that functions as an antiviral mechanism in higher plants and insects. To counteract RNA silencing, viruses express silencing suppressors that interfere with both siRNA- and microRNA-guided silencing pathways. We used comparative in vitro and in vivo approaches to analyse the molecular mechanism of...
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Full Text:: by several viral suppressors Lóránt Lakatos1, Tibor Csorba1, Vitantonio Pantaleo1, Elisabeth J

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

Creator:: Padamsee, Mahajabeen, Kumar, T. K. Arun, Riley, Robert, Binder, Manfred, Boyd, Alex, Calvo, Ana M., Furukawa, Kentaro, Hesse, Cedar, Hohmann, Stefan, James, Tim Y., LaButti, Kurt, Lapidus, Alla, Lindquist, Erika, Lucas, Susan, Miller, Kari, Shantappa, Sourabha, Grigoriev, Igor V., Hibbett, David S., McLaughlin, David J., Spatafora, Joseph W., and Aime, M. Catherine
Abstract:: Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W....
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Full Text:: . Hibbett d,1, David J. McLaughlin b,1, Joseph W. Spatafora e,1, M. Catherine Aime a,1,⇑ aDepartment of

Maximizing the Nutritional Potential of Potato: the Case of Folate

Creator:: Goyer, Aymeric
Abstract:: Micronutrient malnutrition, also known as the hidden hunger, affects over two billion people worldwide. Potato is the third most consumed food crop in the world, and is therefore a fundamental element of food security for millions of people. Increasing the amount of micronutrients in potatoes could help alleviate worldwide micronutrient...
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Full Text:: for Neural Tube Defects, Vascular Disease and Cancer: Evolving Science J Nutr:1961S–1968S Bazzano

Phenotypic Plasticity of the Hydrasperman Seed Fern Tetrastichia bupatides Gordon (Lyginopteridaceae)

Creator:: Dunn, Michael T. and Rothwell, Gar W.
Abstract:: Fifty-nine stems of Tetrastichia bupatides, numerous frond segments, and roots from Oxroad Bay, Scotland, have recently been analyzed. They reveal that many characters originally used to describe this species exhibit a wider range of variation than previously suspected. These data suggest that ribs of the protostele are most commonly four...
Resource Type:: Article
Full Text:: February 2012. 823 Int. J. Plant Sci. 173(7):823–834. 2012. � 2012 by The University of Chicago. All

ScholarsArchive@OSU

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Gramene: a resource for comparative grass genomics

Gramene: Development and Integration of Trait and Gene Ontologies for Rice

Kinetic Mechanism of the Hydrogen-Oxidizing Hydrogenase from Soybean Nodule Bacteroids

Kinetic and Spectroscopic Analysis of the Inactivating Effects of Nitric Oxide on the Individual Components of Azotobacter vinelandii Nitrogenase

Invaded range of the blackberry pathogen Phragmidium violaceum in the Pacific Northwest of the USA and the search for its provenance

Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

Maximizing the Nutritional Potential of Potato: the Case of Folate

Phenotypic Plasticity of the Hydrasperman Seed Fern Tetrastichia bupatides Gordon (Lyginopteridaceae)

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