Nassau grouper Epinephelus striatus are a large bodied, top level predator that is ecologically important throughout
the Caribbean. Although typically solitary, Nassau grouper form large annual spawning aggregations at predictable times in specific
locations. In 2003, The Cayman Islands Marine Conservation Board established protection for a newly rediscovered Nassau
grouper...
Climate change is a global phenomenon, but natural selection occurs within landscapes. A central tenet of landscape ecology is that mobile species depend on complementary habitats, which are insufficient in isolation, but combine to support animals through the full annual cycle. For coldwater fishes, it is widely assumed that maximum...
Ninety-six hour acute toxicity bioassays were employed to
determine the tolerance of juvenile coho salmon to chlorinated
stabilized kraft mill effluent (SKME). In addition the effect of
chlorinated SKME on the growth of juvenile coho salmon in six and
ten day experiments was studied.
Results of the acute toxicity tests...
Between 1982-1984 I studied site tenacity and mate retention in Black Terns at Sycan Marsh, Lake County, Oregon. I banded 778 adult Black Terns and used this marked population to test the hypotheses that site tenacity and mate retention would be less for Black Terns which nest in variable marsh...
Depleted species of rockfish (Sebastes spp.) from the Northeast Pacific experience high discard mortality due to "barotrauma," induced from the rapid change in pressure during capture. Research suggests rockfish have the potential to survive barotrauma if immediately recompressed, but the potential for long-term recovery is unknown. In this project, we...
Invasion by nonnative brook trout (Salvelinus fontinalis) often results in replacement of bull trout (Salvelinus confluentus) in western North America, but the causal mechanisms are not well understood. Removal of brook trout from 1992 to 2000 from Sun Creek in southern Oregon, provided an opportunity to investigate the changes in...
Listed as endangered in 1988, the Lost River sucker (Deltistes luxatus) and Shortnose sucker (Chasmistes brevirostris) were once abundant and widely distributed in the Klamath Basin in Southern Oregon and Northern California. Populations of both species have been declining since the late 1960’s. Factors thought responsible for declines include naturally...
Anadromous coastal cutthroat trout Oncorhynchus clarkii clarkii may be highly dependent on estuaries, passing through them multiple times during their lifetime. However, few studies have investigated estuarine use by coastal cutthroat trout and it is often thought that estuaries serve primarily as migration corridors rather than rearing areas. We used...
This critical review of literature on dissolved oxygen requirements of freshwater fishes is one of a series of papers on water quality criteria, the formulation of which is a prerequisite to the
control of water pollution. It was prepared for FAO by the State of
Oregon (acting by and through...
Management in fire-prone ecosystems relies widely upon application of prescribed fire and/or fire surrogate (e.g., forest thinning) treatments to maintain biodiversity and ecosystem function. Recently, published literature examining wildlife response to fire and fire management has increased rapidly. However, none of this literature has been synthesized quantitatively, precluding assessment of...
Pacific sardines (Sardinops sagax) are an economically and ecologically important forage fish which transfer energy from planktonic primary producers and secondary consumers to upper trophic predators. Previous genetics studies of Pacific sardine suggested a panmictic population with a shallow genetic structure. However, more than one subpopulation within the Central California...
An inextricable link exists between dams and human development in the Pacific Northwest, but they can fragment rivers and reduce genetic connectivity for freshwater and anadromous fishes. Since the early-twentieth century, a series of hydropower and irrigation dams on the mainstem Klamath River, California, has fragmented migratory corridors and eliminated...
Landscape characteristics can strongly influence demographic and genetic processes in wildlife populations. Climate change and human land use are causing many landscapes to change rapidly, and the effects on wildlife populations must be understood to properly manage these threats and design effective conservation strategies. In this dissertation, I explored the...
Somatic growth variation manifests from the cumulative effects of a suite of biological, ecological, and environmental processes and can have profound effects on individual fitness and species population dynamics. As ectotherms whose growth dynamics are greatly influenced by environmental factors, sea turtles display considerable variation in somatic growth within and...
Based on the number of velar tentacles and the form of longitudinal
lingual laminae found in Lampetra (Entosphenus) t. tridentata
and its closely related forms, the taxon Entosphenus should not be
considered as a genus as commonly adopted, but, along with the taxa
Lethenteron and Lampetra, should be regarded as...
Agricultural practices, including tillage, fertilization, and residue management, can affect surface runoff, soil erosion, and nutrient cycling. These processes, in turn, may adversely affect (1) quality of aquatic resources as habitat for amphibians, fish, and invertebrates, (2) costs of treating surface and ground water to meet drinking water standards, and...
Deciding which textbook to assign to students is often a very difficult decision. A textbook should offer more than just a synthesis of information, it should inspire curiosity, cause one to reflect, and provide a framework for making decisions. Most reviews reflect a single opinion, sometimes based on personal preferences....
Wild populations of fish are faced with a multitude of stressors, which may include human interaction, toxins, and disease. Benzo(a)pyrene (BaP), a known carcinogen and immunotoxin, has been reported in the stomach contents of juvenile chinook salmon, Oncorhynchus tshawytscha, in urban waterways. We investigated the impact of chronic dietary exposure...
The microsporidian parasite Nadelspora canceri infects Dungeness crabs, Cancer magister, along the United States Pacific Northwest coast. The prevalence and seasonal variation of N. canceri in Dungeness crabs from Alsea Bay, Oregon, are described based on examination of 2991 crabs collected at monthly intervals from October, 1991 to June, 1993....
Rainbow trout (Oncorhynchus mykiss) experience a variety of stressors in their natural environment as well as in aquaculture that can have negative effects on their physiology. The effects of physiological stress and endocrine disruption have been well described in fish. However, there is a scarcity of information on the effects...
Habitat loss causes a reduction in available resources for wildlife, alters the configuration of remaining habitat, and may isolate wildlife populations. White-breasted nuthatches (Sitta carolinensis) are experiencing long-term population declines in the Willamette Valley of Oregon, where they are historically associated with oak woodlands. As secondary cavity-nesters, white-breasted nuthatches may...
OBJECTIVE. Hospital readmissions are a current target of initiatives to reduce healthcare costs. This study quantified the association between having a clinical culture positive for 1 of 3 prevalent hospital-associated organisms and time to hospital readmission.
DESIGN. Retrospective cohort study.
PATIENTS AND SETTING. Adults admitted to an academic, tertiary care...
Current bioassessment efforts are focused on small wadeable streams, at least partly because assessing ecological conditions in non-wadeable large rivers poses many additional challenges. In this study, we sampled 20 sites in each of seven large rivers in the Pacific Northwest, USA, to characterize variation of benthic diatom assemblages among...
The number of sites sampled must be considered when determining the effort necessary for adequately assessing taxa richness in an ecosystem for bioassessment purposes; however, there have been few studies concerning the number of sites necessary for bioassessment of large rivers. We evaluated the effect of sample size (i.e., number...
Following a four-year period of writing, member comment, and multiple revisions, the AFS Position Paper and Policy on Mining and Fossil Fuel Extraction was approved unanimously by the membership at the Society's annual business meeting August 19, 2015, in Portland, Oregon. The entire document can be read at fisheries.org/policy_statements; a...
Although short-tailed weasels (Mustela erminea) are important predators of small mammals, little is known about their space use, habitat selection, or vulnerability to predation in North America. To evaluate the effects of forest management and social structure on home range size and habitat selection of short-tailed weasels, I conducted a...
The management of small-scale fisheries (SSF) around the world is facing increasing demands for reformation given ecological, social, and economic vulnerabilities. The governance of SSF is particularly important to foster the sustainability of these systems given that it combines regulatory instruments, interactive participation of diverse stakeholders, and the guiding values...
Larval transport and retention of two endangered suckers were studied in a highly
altered lacustrine/riverine complex. The endangered populations of Lost River sucker,
Deltistes luxatus, and shortnose sucker, Chasmistes brevirostris, in Upper Klamath Lake
(UKL), Oregon are the largest remnant populations of these suckers. Downstream of
UKL, the Keno Impoundment...
Models of a species’ distribution and models of a species’ spatially explicit density are valuable tools for conservation. They allow researchers to estimate changes in distributions, densities, and populations, based on changing environmental conditions. To trust such estimates, however, the quality of models is exceedingly important. Model performance can be...
Understanding how wetland birds use habitat is pivotal to developing successful and
beneficial conservation strategies. Although it has been an ardent topic in forest
research for some time, how species interact with the spatial patterning of habitat
across a landscape (i.e., landscape structure) has been more or less neglected in...
Rainbow trout (Salmo gairdneri) and bluegill (Lepomis macrochirus)
were exposed to flows of water containing low DO concentrations
produced by bubbling nitrogen through the water. Abrupt exposure of
fish to critical DO concentrations (The standard dose response) and by
a more gradual changing of DO levels (The "stepdown" approach) were...
An estimated 99% of native wet prairie has been lost in the Willamette Valley, Oregon, but a large number of seasonal wetlands remain on private lands dedicated to grass seed production within the historical wet prairie landscape. Because agriculture is known to alter physical and chemical wetland conditions, I investigated...
Declines in populations of anadromous salmonids (Oncorhynchus spp.) in the Columbia River drainage basin have resulted in extensive programs to annually release large numbers of hatchery-raised juvenile salmonids in an effort to support salmonid restoration. The Pacific Flyway population of Caspian terns (Hydroprogne caspia) has grown from around 3,500 nesting...
Rainbow trout were exposed to aluminum at pH 7.25 and
8.25 and four hardnesses (10, 30, 80, and 120 ppm CaCO₃)
for 96 hours in a continuous-flow system and mortality and
aluminum accumulation in the gills were determined.
Temperature, pH, and dissolved oxygen were measured
daily for each treatment. Dissolved...
Coastal wetland plants are adapted to varying degrees of inundation. However, functional relationships between inundation and productivity are poorly characterized for most species. Determining species-specific tolerances to inundation is necessary to evaluate sea-level rise (SLR) effects on future marsh plant community composition, quantify organic matter inputs to marsh accretion, and...
Low copy number anonymous nuclear loci were used to search for species markers in four species of Klamath Basin suckers. We sequenced 28 randomly chosen loci representing 10,421 bp; 21 loci were similar to sequences in GenBank. Eight fixed sequence differences were found among Klamath species. Locus 120 contained rare...
Two replications of a half dial lei cross experiment were performed among four inbred lines of mosquitofish, Gambusia affinis.
These inbred lines originated from three random-bred stocks: OR,
TX and CD. The experiment was conducted as a completely randomized
design. Experimental material consisted of parental lines and F₁ populations maintained...
The genotype frequencies of one-year-old oyster spat
(Crassostrea gigas) from parents of known genotype, are compared
to the frequencies expected with Mendelian inheritance. The genotypes
are characterized at three enzyme loci, Aspartate amino-transferase
(AAT), Phosphohexose isomerase (PHI) and Leucine
aminopeptidase (LAP), and a general protein locus. In this study
expression...
Historically fire has been the primary disturbance factor in the sagebrush-steppe. The settlement of the West by Euro-Americans, grazing by domestic livestock, and the concomitant spread of invasive species have altered the historical fire regime. Understanding the long-term vegetation structure and fuel succession of the various sagebrush-dominated communities of this...
A static-renewal, seven day test was developed and
utilized to study the effects of nutrition on the sensitivity
of Mysidopsis intii Holmquist to zinc. It was found that
juvenile growth was the most reliable and sensitive endpoint
that could also reflect the subtle effects of low zinc
concentrations and diet...
The endangered western stock of the Steller sea lion (Eumetopias jubatus) - the largest of the eared seals - has declined by 80% from population levels encountered four decades ago. Current overall trends from the Gulf of Alaska to the Aleutian Islands appear neutral with strong regional heterogeneities. A published...
The Wetland Reserve Program (WRP) is one conservation tool that mitigates national wetland loss and a primary goal for the program includes optimizing wildlife habitat by restoring wetland functions and values. Few studies have evaluated the WRP, which limits our understanding of its impact on wildlife populations. I assessed the...
The performance of an organism or organismic subsystem is
the result of the interaction between the performance capacity of
the system and Its environment. Environmental conditions can
stress an organism and thus affect it's performance. In this
study, three whole organism performances were examined: critical
swimming speed, fatigue time and...
Biliary excretion has been of considerable interest in mammals
but has not been extensively studied in fish. To understand the
significance of biliary excretion in rainbow trout (Salmo gairdneri),
two studies were conducted.
The objective of the initial study was to evaluate the ability of
rainbow trout to excrete a...
Size-structured spatial patterns in larvae of 2 sucker and 3 minnow species are described from fixed-site
sampling in Upper Klamath Lake, Oregon, and are used to demonstrate patterns of size-based losses downstream and
retention in the lake. The smallest larvae of shortnose suckers (Chasmistes brevirostris), Lost River suckers (Deltistes
luxatus),...
Rapid adaptation and evolution based on standing genetic variation and novel mutations is likely to be one of the primary ways that species survive the widespread anthropogenic environmental changes expected of the next century. Three-spined stickleback (Gasterosteus aculeatus) are known to be capable of extremely quick, dramatic adaptation in response...
The effects of exposure to suspended silt, kaolin and fuller's
earth on growth and condition of Pacific oysters, 16 months of age,
were studied. The exposure apparatus maintained a continuous flow
of turbid water through chambers containing test oysters. Additional
studies measured the filtration rates of oysters exposed to suspended...
It is critical for wildlife managers to understand the population dynamics of a harvested species, particularly for ungulates, which are a valuable wildlife resource. Due to concerns that mule deer (Odocoileus hemionus) populations in Oregon were declining, more comprehensive data on population vital rates and the factors potentially affecting them...
In the tropics, widespread deforestation and conversion of primary forests to agricultural and pasture lands has resulted in losses of composition, structure, and functions of forest landscapes. Deforestation in the tropics is typically preformed via slash-and-burn practices; the byproducts from combustion have been identified as the second-highest form of anthropogenically...
Coho salmon (Oncorhynchus kisutch) were exposed to sublethal levels of a water-soluble fraction (WSF) of Cook Inlet crude oil for periods ranging from 18 to 31 days, at four acclimation temperatures. The fatty acid composition of phospholipids extracted from muscle, gill, liver, and brain tissues, and, at three of the...
Resident bull trout (Salvelinus confluentus) may be particularly vulnerable to human related disturbance, however very few studies have focused on resident bull trout populations. The abundance of bull trout is one measure of the strength and potential for persistence of a population. Habitat characteristics may influence resident bull trout abundance...
Mule deer (Odocoileus hemionus) populations in south-central Oregon are near their lowest levels since census efforts began in 1961. I investigated fawn survival, cause-specific mortality, and factors contributing to mortality from 2010 – 2012 to identify potential causes for the decline. I also explored pre-parturition and parturition site characteristics.
I...
Identifying appropriate units for conservation requires knowledge of evolutionary
patterns and risks of managing at different geographical and genetic scales. I examined
genetic diversity at different geographical scales among 11,400 rainbow trout
(Oncorhynchus mykiss) from 243 locations in 13 major river basins throughout much of
their range and among coho...
The fishes of Upper Klamath Lake appeared to distribute
themselves in three general groups during the summers of 1964
and 1965: (1) the chubs--unrestricted as to distribution with slight
seasonal variations; (2) rainbow trout and yellow perch -- restricted
to certain water conditions that exist only along the northern marsh...
A substantial fraction of estuarine tidal wetlands have been lost to development or other human uses in the Pacific Northwest since the 1800s. Wetland restoration, typically through tidal re-connection, can restore normal tidal hydrology to these areas and improve estuarine capacity to support ecosystem functions and services. Restoration may initiate...
I investigated Caspian terns (Sterna caspia) breeding at colonies on the Columbia Plateau (southeastern Washington and northeastern Oregon), with emphasis on the breeding and foraging ecology of Caspian terns nesting at colonies in the mid-Columbia River. I focused research at colonies where Caspian terns foraged on juvenile salmonids (Oncorhynchus spp.)...
Temperature influences the incidence of chemically induced cancer in fish,
with warmer temperatures being associated with higher cancer incidence. The
mechanisms of temperature-modulated chemical carcinogenesis in fish, however,
have not been described in detail. Therefore, one primary objective of this study
was increased understanding of how temperature-modulated genotoxicity of 7,12-...
This paper lists, and gives individual accounts of, those Oregon mammals that at some time have been referred to as being of a status other than common. Although rare and endangered wildlife species were listed on a national level in the United States, the
large areas of land included in...
Caspian terns (Hydroprogne caspia) and double-crested cormorants
(Phalacrocorax auritus) nest in large colonies on East Sand Island in the Columbia
River estuary, the largest known colonies for the two species in the world. Both
species of piscivorous colonial waterbirds have been identified as predators with a
significant impact on the...
The present study investigated the neurocrine and neuroendocrine control of locomotor activity, habitat choice, social behavior, and migratory behavior in juvenile chinook salmon (Oncorhynchus tshawytscha). This was achieved by the manipulation of three neurotransmitter systems; serotonin (5-HT), dopamine (DA), y-amino-n-butyric acid (GABA) and the neuropeptide corticotropin-releasing hormone (CRH). Chemicals were...
This research was designed to evaluate the Fatty Acid Signature (FAS) technique as a non-lethal alternative to more traditional, and sometimes destructive, methods of studying the diet composition of piscivorous birds. Specifically we tested the technique with Caspian terns (Hydroprogne caspia) which currently nest in large numbers in the Columbia...
This dissertation focuses on the predator-prey relationship between two species of avian predators, Caspian terns (Hydroprogne caspia) and double-crested cormorants (Phalacrocorax auritus), and one of their important prey types, juvenile salmonids (Oncorhynchus spp.), in the Columbia River estuary of Oregon and Washington states during the period 1998 – 2007. I...
The Pacific Northwest has a relatively low diversity of primary freshwater fishes with most of the endemism and diversity in the Columbia River and Klamath River. However, the Oregon Coastal Subprovince defined as the coastal rivers from Miami River in the north to Sixes River in the south, has a...