Index Catalog // ScholarsArchive@OSU

Sequence and comparative analysis of the genome of HSV-1 strain McKrae

Creator:: Watson, G., Xu, W., Reed, A., Babra, B., Putman, T., Wick, E., Wechsler, S., Rohrmann, G. F., and Jin, L.
Abstract:: Ocular infection by HSV-1 strain McKrae is neurovirulent in both mice and rabbits and causes fatal encephalitis in approximately 50% of animals. In addition, it spontaneously reactivates with high frequency relative to other HSV-1 strains in rabbits. We sequenced the McKrae strain genome and compared its coding protein sequences with...
Resource Type:: Article
Full Text:: Analysis Software v. 5.2. All major sequence variants in the McKrae draft genome were confirmed by PCR

Comparative Genomics of Freshwater Bloom-Forming Cyanobacteria and Associated Organisms

Creator:: Driscoll, Connor B.
Abstract:: The advent of improved DNA sequencing technologies has allowed the analysis of various microbial communities. Bloom-forming freshwater cyanobacteria can produce toxins and taste-and-odor compounds that can negatively affect drinking water supplies. Here, I have employed second- and third-generation sequencing technologies to characterize bloom-forming freshwater cyanobacterial genomes and their associated heterotrophic...
Resource Type:: Dissertation
Full Text:: . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18 2.5 Insights from the genome sequence . . . . . . . . . . . . . . . . . . . 19 2.5.1 PacBio

Advances in Freshwater Cyanobacterial Genomics

Creator:: Brown, Nathaniel M.
Abstract:: Limnology is undergoing a transition to high-throughput -omic analysis of freshwater bacterial communities. An important first step in making the transition is to characterize several genomes that can be used as references to guide metagenome assembly and analysis. Here I characterize four new freshwater cyanobacterial genomes, a pair of lake...
Resource Type:: Dissertation
Full Text:: . . . . . . . . . . . . . . . . . . . . . . . . . 40 3.4.6 Draft genome binning . . . . . . . . . . . . . . . . . . . . . . 40 3.4.7 Finished Anabaena

Analysis of the genome of leporid herpesvirus 4

Creator:: Babra, Bobby, Watson, Gregory, Xu, Wayne, Jeffrey, Brendan, Xu, Jia-Rong, Rockey, Dan, Rohrmann, George, and Jin, Ling
Abstract:: The genome of a herpesvirus highly pathogenic to rabbits, leporid herpesvirus 4 (LHV-4), was analyzed using high-throughput DNA sequencing technology and primer walking. The assembled DNA sequences were further verified by restriction endonuclease digestion and Southern blot analyses. The total length of the LHV-4 genome was determined to be about...
Resource Type:: Article
Full Text:: contain four isomeric forms of the genome and have genomic sequence similarity greater than 68 50% to

The Genome of Pseudomonas fluorescens Strain R124 Demonstrates Phenotypic Adaptation to the Mineral Environment

Creator:: Barton, Michael D., Petronio, Michael, Giarrizzo, Juan G., Bowling, Bethany V., and Barton, Hazel A.
Abstract:: Microbial adaptation to environmental conditions is a complex process, including acquisition of positive traits through horizontal gene transfer or the modification of existing genes through duplication and/or mutation. In this study, we examined the adaptation of a Pseudomonas fluorescens isolate (R124) from the nutrient-limited mineral environment of a silica cave...
Resource Type:: Article
Full Text:: (see Fig. 3). The P. fluorescens R124 draft genome sequence was generated from the reference alignment

Characterization of Baculovirus genes involved in genome replication and processing

Creator:: Vanarsdall, Adam L.
Abstract:: The Baculoviridae comprise a diverse group of occluded DNA viruses that contain large double-stranded DNA genomes of 80 - 180 kb and may encode up to 180 gene products. To understand how baculoviruses replicate and process their genomes and the gene products that are involved in these events, a series...
Resource Type:: Dissertation
Full Text:: different genomes display a high degree of sequence variation, hrs within a single genome are closely

The genome of a baculovirus isolated from Hemileuca sp. encodes a serpin ortholog

Creator:: Rohrmann, George F., Erlandson, Martin A., and Theilmann, David A.
Abstract:: The genome sequence of a baculovirus from Hemileuca sp. was determined. The genome is 140,633 kb, has a G+C content of 38.1%, and encodes 137 putative open reading frames over 50 amino acids. 126 of these ORFs showed similarity to other baculovirus genes in the database including all 37 core...
Resource Type:: Article
Full Text:: 1793 Email: rohrmanng@orst.edu Abstract The genome sequence of a baculovirus from Hemileuca sp

A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages

Creator:: Dreher, Theo W., Brown, Nathan, Bozarth, Connie S., Schwartz, Andrew D., Riscoe, Erin, Thrash, Cameron, Bennett, Samuel E., Tzeng, Shin-Cheng, and Maier, Claudia S.
Abstract:: Bacteriophage S-CRM01 has been isolated from a freshwater strain of Synechococcus and shown to be present in the upper Klamath River valley in northern California and Oregon. The genome of this lytic T4-like phage has a 178,563 bp circular genetic map with 297 predicted protein-coding genes and 33 tRNA genes...
Resource Type:: Article

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

Creator:: Grote, Jana, Thrash, J. Cameron, Huggett, Megan J., Landry, Zachary C., Carini, Paul, Giovannoni, Stephen J., and Rappe, Michael S.
Abstract:: SAR11 is an ancient and diverse clade of heterotrophic bacteria that are abundant throughout the world's oceans, where they play a major role in the ocean carbon cycle. Correlations between the phylogenetic branching order and spatiotemporal patterns in cell distributions from planktonic ocean environments indicate that SAR11 has evolved into...
Resource Type:: Article
Full Text:: conservation versus genome sequence similarity (av- erage bit score of protein-coding orthologs) demonstrated

Cloning, sequence and expression of the glycoprotein gene of infectious hematopoietic necrosis virus, a fish rhabdovirus

Creator:: Feyereisen-Koener, Josette
Abstract:: Double-stranded cDNA was prepared from infectious hematopoietic necrosis virus mRNA and cloned into the plasmid vector pUC8. A cDNA clone (pG8) containing the entire coding region for the glycoprotein (G-protein) of infectious hematopoietic necrosis virus was selected by hybridization to a ³²P-labeled probe. The restriction map and nucleotide sequence of...
Resource Type:: Dissertation
Full Text:: Cloning, sequence and expression of the glycoprotein gene

ScholarsArchive@OSU

Sequence and comparative analysis of the genome of HSV-1 strain McKrae

Comparative Genomics of Freshwater Bloom-Forming Cyanobacteria and Associated Organisms

Advances in Freshwater Cyanobacterial Genomics

Analysis of the genome of leporid herpesvirus 4

The Genome of Pseudomonas fluorescens Strain R124 Demonstrates Phenotypic Adaptation to the Mineral Environment

Characterization of Baculovirus genes involved in genome replication and processing

The genome of a baculovirus isolated from Hemileuca sp. encodes a serpin ortholog

A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

Cloning, sequence and expression of the glycoprotein gene of infectious hematopoietic necrosis virus, a fish rhabdovirus

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