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  • Protein secondary structure prediction using conditional random fields and profiles

    Creator:
    Shen, Rongkun
    Abstract:
    Protein secondary structure prediction plays a pivotal role in predicting protein folding in three-dimensions. Its task is to assign each residue one of the three secondary structure classes helix, strand, or random coil. This is an instance of the problem of sequential supervised learning in machine learning. This thesis describes...
    Resource Type:
    Masters Thesis
    Full Text:
    representation is the PSI-BLAST profile introduced by D. Jones, which is based on matching sequences of known

  • Activity recognition in desktop environments

    Creator:
    Shen, Jianqiang
    Abstract:
    Knowledge workers are struggling in the information flood. There is a growing interest in intelligent desktop environments that help knowledge workers organize their daily life. Intelligent desktop environments allow the desktop user to define a set of “activities” that characterize the user’s desktop work. These environments then attempt to identify...
    Resource Type:
    Dissertation
    Full Text:
    supportive and patient with me during the past 5 years. I would like to thank my committee members, Alan

  • A probabilistic model for anomaly detection in remote sensor streams

    Creator:
    Dereszynski, Ethan W.
    Abstract:
    Remote sensors are becoming the standard for observing and recording ecological data in the field. Such sensors can record data at fine temporal resolutions, and they can operate under extreme conditions prohibitive to human access. Unfortunately, sensor data streams exhibit many kinds of errors ranging from corrupt communications to partial...
    Resource Type:
    Masters Thesis
    Full Text:
    & Marginalization . . . . . . . . . . . . . . . . . . . 29 7 Results

  • Probabilistic models for quality control in environmental sensor networks

    Creator:
    Dereszynski, Ethan W.
    Abstract:
    Networks of distributed, remote sensors are providing ecological scientists with a view of our environment that is unprecedented in detail. However, these networks are subject to harsh conditions, which lead to malfunctions in individual sensors and failures in network communications. This behavior manifests as corrupt or missing measurements in the...
    Resource Type:
    Dissertation
    Full Text:
    Estimation . . . . . . . . . . . . . . . . . . . . . . . . . 29 2.6.5 Inference

  • Improving automated email tagging with implicit feedback

    Creator:
    Sorower, Mohammad Shahed
    Abstract:
    Machine learning systems are generally trained offline using ground truth data that has been labeled by experts. However, these batch training methods are not a good fit for many applications, especially in the cases where complete ground truth data is not available for offline training. In addition, batch methods do...
    Resource Type:
    Dissertation
    Full Text:
    committee members: Prof. Prasad Tadepalli, Prof. Alan Fern, Prof. Xiaoli Fern and Prof. Harry Yeh, for

  • Anomaly Detection and Probabilistic Diagnosis for Automated Data Quality Control

    Creator:
    Zemicheal, Tadesse H.
    Abstract:
    Advances in sensor technology are greatly expanding the range of quantities that can be measured while simultaneously reducing the cost. However, deployed sensors drift out of calibration and fail, so every sensor network requires quality control procedures to promptly detect these failures. To address these problems, we propose a two-level...
    Resource Type:
    Dissertation
    Full Text:
    conferences. I am very grateful to Dr. Alan Fern for providing feedback and discussing research ideas during

  • Applying machine learning for prediction, recommendation, and integration

    Creator:
    Bao, Xinlong
    Abstract:
    This dissertation explores the idea of applying machine learning technologies to help computer users find information and better organize electronic resources, by presenting the research work conducted in the following three applications: FolderPredictor, Stacking Recommendation Engines, and Integrating Learning and Reasoning. FolderPredictor is an intelligent desktop software tool that helps...
    Resource Type:
    Dissertation
    Full Text:
    Bergman, Alan Fern, Jon Herlocker and Prasad Tadepalli. They generously contributed their time and

  • Image features and learning algorithms for biological, generic and social object recognition

    Creator:
    Zhang, Wei
    Abstract:
    Automated recognition of object categories in images is a critical step for many real-world computer vision applications. Interest region detectors and region descriptors have been widely employed to tackle the variability of objects in pose, scale, lighting, texture, color, and so on. Different types of object recognition problems usually require...
    Resource Type:
    Dissertation
    Full Text:
    times we had together. My thanks go out to the rest of my Ph.D. committee members: Professor Alan

  • A Benchmarking Study of Unsupervised Anomaly Detection Algorithms

    Creator:
    Emmott, Andrew F.
    Abstract:
    It is common practice in the unsupervised anomaly detection literature to create experimental benchmarks by sampling from existing supervised learning datasets. We seek to improve this practice by identifying four dimensions important to real-world anomaly detection applications --- point difficulty, clusteredness of anomalies, relevance of features, and relative frequency of...
    Resource Type:
    Masters Thesis
    Full Text:
    Shubhomoy Das, Thomas Dietterrich, Alan Fern and Weng-Keen Wong as authors. The contributions of Shubhomoy

  • Explanations and Processes to Enable Humans to Assess AI with Respect to Manipulable Properties

    Creator:
    Dodge, Jonathan E.
    Abstract:
    Assessing AI systems is difficult. Humans rely on AI systems in increasing ways, both visible and invisible, meaning a variety of stakeholders need a variety of assessment tools (e.g., a professional auditor, a developer, and an end user all have different needs). We posit that it is possible to provide...
    Resource Type:
    Dissertation
    Full Text:
    who kept us on the proper statistical path; Alan Fern, who wrangled grant funders and taught us all