Index Catalog // ScholarsArchive@OSU

Creator:: Araújo, Welington L., Creason, Allison L., Mano, Emy T., Neves, Aline A. C., Minami, Sonia N., Chang, Jeff H., and Loper, Joyce E.
Abstract:: 36 strains of Burkholderia spp. isolated from sugarcane were evaluated for biological control of leaf and pseudobulb necrosis of orchid caused by B. gladioli. 29 of the sugarcane strains suppressed the disease in greenhouse assays. We generated a draft genomic sequence of one suppressive strain, B. seminalis TC3.4.2R3. The genome...
Resource Type:: Dataset

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., II, Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...
Resource Type:: Article

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis II, Edward W., Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was...
Resource Type:: Dataset

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article

Creator:: Lim, Chee Kent, Hassan, Karl A., Tetu, Sasha G., Loper, Joyce E., and Paulsen, Ian T.
Abstract:: One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire or compete for iron. We investigated the transcriptomic and proteomic effects of iron limitation on P. fluorescens Pf-5 by...
Resource Type:: Article

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