Organophosphate insecticides may produce sublethal, adverse effects on salmonid
growth, reproduction, maturation, swimming, and feeding. Chlorpyrifos, an
organophosphate insecticide, was detected by the Oregon Department of Environmental
Quality in the Hood River and tributaries during March 1999 at levels exceeding state
water quality standards in the range of 0.011-0.482 μg/L....
Port-Orford-cedar (POC) (Chamaecyparis lawsoniana (A. Murl.) Parl) is an
important tree species native the coastal ranges of southern Oregon and northern
California. The tree is a false-cedar in the cypress (Cupressaceae) family and is used for
timber and planted as an ornamental. The tree in most of its native range...
Polycyclic aromatic hydrocarbons (PAH) are common pollutants of aquatic systems in urban environments. Due to their lipophilicity, persistence, toxicity and carcinogenicity, they are chemicals of considerable concern. The Portland Harbor includes a large industrial section with numerous current and historic sources for PAH contamination. Runoff from a large metropolitan area...
Deforestation, intensive agriculture and chemical use all can cause long-lastingn negative impacts on soil health. With all the vital functions that soils perform and the potential for further soil degradation, it is important that standards of soil quality or soil health be implemented. Soil aggregation is considered to be a...
Five new anti-zebrafish cytochrome P450 (CYP) antipeptide polyclonal antibodies were tested for tissue specificity using immunohistochemistry. The antibodies are for the zebrafish CYPs IA, 2K6, 2K7, 3A65 and 3C1. Three of these antibodies were also compared to existing antibodies made against CYP isozymes in rainbow trout (Oncorhynchus mykiss). Individual staining...
The cabbage maggot, Delia radicum (L.) (Diptera: Anthomyiidae) is a serious
pest of cruciferous crops (i.e. broccoli, cabbage, turnip, rutabaga) in North America and
Europe (Coaker and Finch, 1971; Whistlecraft et al., 1985). The adult flies lay eggs
around the base and in cracks at the soil surface around wild...
Northwest cherry cultivars including Prunus avium 'Bing', Prunus avium 'Rainier', Prunus avium 'Royal Anne' and Prunus cerasus 'Montmorency' were separated into epidermal tissue, flesh and pit and cryogenically milled with liquid nitrogen. These samples as well as whole samples from each variety were extracted with acetone followed by a chloroform...
Little is known about Frankia, a gram-positive, nitrogen-fixing bacterium, because of the difficulty associated with isolating pure cultures. This nitrogen-fixing symbiosis involves Frankia and the roots of actinorhizal host plants belonging to eight plant families and 25 genera. These plants are important pioneer species traditionally found in nitrogen-poor soils and....
Little is known about upland agricultural grassland soil invertebrate composition and its contribution to ecosystem functioning. Soil-dwelling organisms play a central role in soil formation, plant nutrition, and are significant food contributors for organisms in several trophic levels. Information is needed about mesofauna seasonal population and composition trends throughout the...
Plasminogen activators (PAs) have been implicated in: ovulation, oocyte maturation, fertilization, implantation, and many other reproductive activities. Three pathways have been implicated in the activation of the PA regulatory system. These include the conventional PKC and cAMP-dependent signaling pathways, and also an independent pathway thought to be regulated by protein...
Saturated hydraulid conductivity (Ks) is a central soil physical property in determining water movement and contaminant transport through soils; hence modeling this system requires an accurate determination of K. Decimeter-scale KS measurements employing cores or infiltrometers are used frequently, but field-scale KS values are required to encompass the full range...
A set of flour samples with protein content ranging from 9.7 - 13.3 % was used for this study to evaluate the effectiveness of HMW-GS, SEHPLC and mixograph characteristics as screening tools for noodle texture. The sample set had a large variation in HMW-GS composition with Payne score ranging from...
An organisms' genotype may not be reflected in its phenotype. For example, epistasis - the interaction of non-allelic genes can cause deviations from expected phenotypic ratios. The epistatic interaction between the hooded (Kap) and short-awned (lks2) loci in barley (Hordeum vulgare) precludes the localization of the Kap locus, based on...
Horticultural and nursery crops are the leading agricultural commodity in Oregon. Among currently grown nursery plants, Verbena x hybrida is a staple ornamental. It is grown and shipped worldwide, thus requiring a high level of certainty concerning the plants’ health and potential viability. V. x hybrida cultivars have been infected...
Cucurbits are grown in production agriculture in Oregon as well as in smallholder agriculture in tropical South America. Experimental research was performed at the OSU Research Farm in 2001 with direct-seeded cucurbits, and literature reviews were conducted to develop a characterization of smallholder farming in tropical South America. The two...
Gaps in the forest canopy allow more light to reach the understory. Since
light in the understory is heterogeneous, understanding the physiological
processes in gaps and non-gaps will improve estimates of carbon balance. This
research outlines an approach for defining carbon balance for Salal (Gaultheria
shallon Pursh.), a dominant understory...
Soil CO2 efflux is a major contributor of CO2 to the atmosphere. The rate that CO2 is respired out of the soil is called the soil flux (Fs). Many variables alter Fs. These variables differ drastically in the variety of ecosystems found on the earth. It is important to understand...
The ionotropic glutamate receptors are ligand-gated ion channels that mediate the majority of excitatory neurotransmission in the brain. The three classes of ionotropic glutamate receptors are alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA), N-methyl-D-aspartate (NMDA), and kainite. These three classes have unique subunits. NMDA receptors play important roles in development, forms of synaptic plasticity,...
Chlamydiae are obligate intracellular bacterial pathogens with a unique biphasic life cycle that consists of an infectious but non-dividing form, called elementary bodies (EB), and a noninfectious but metabolically active form, called reticulate bodies (RB). Chlamydia has an unusual process of cell division of which still remains uncharacterized subject matter;...
The acorn woodpecker (Melanerpes formicivorus) is among the most common primary cavity nesters of the Oregon white oak (Quercus garryana) woodlands. Understanding their selection of granary sites is important in evaluating habitat quality and management actions. I hypothesized that granary locations would be consistent with the optimal foraging theory. Site...
COUP-TF interacting protein 1 (CTIP1) is a novel C2H2 zinc finger protein that mediates transcriptional repression of ARP1, a member of the COUP-TF subfamily of orphan nuclear receptors [1]. Here we show that CTIP1 interacts with heterochromatin-associated protein 1 (HP1) in vitro and in cells. This
interaction suggests the existence...
Grain protein concentration of wheat is influenced by numerous factors. When determining a wheat variety's ability to produce protein, the plant's ability to uptake and translocate nitrogen is critical. A greenhouse study was conducted to assess differences in nitrogen use among different wheat varieties. The objective was to determine if...
Various vineyard practices influence the quality of a wine. In 1999, three levels of nitrogen (N), two levels of tillage and two levels of irrigation were applied to Pinot noir grape cultivars at Benton Lane Vineyards in the Southern Willamette Valley. N treatments were zero, soil and foliar applications. Every...
Crystallizing a virus can be difficult and not always successful. Forty-eight salts, buffers, and precipitating agents were used in the hanging drop preparations in attempts to crystallize the San Miguel sea lion virus type 5 (SMSV-5). The first attempt resulted in 22 of the 48 solutions forming a precipitate. The...
Indole-3-carbinol (13C), a metabolite of glucobrassicin, is found in cruciferous vegetables. It is able to act as an inhibitor or promoter of carcinogenesis depending on the species, the carcinogen and when it is given in relation to the carcinogen. This is probably due to the fact that it reacts in...
The timber and Christmas tree industries are important components of the Pacific Northwest economy. A goal of both industries is to produce high quality trees with high growth rates. Accomplishing this requires increased genetic quality of the trees grown. Tissue culture provides the most promise for propagating these superior genotypes....
Age-related decline in the capacity of endogenous antioxidant systems
complicates pharmaceutical use by the elderly by potentially increasing the toxicity of
some compounds. Of particular interest is chemical detoxification via glutathione (GSH)
and attendant GSH-requiring detoxification enzymes, e.g. GSH peroxidases (GPX) and
GSH S-transferase (GST). These enzymes have been shown...
Kincaid's lupine (Lupinus sulphureus ssp. kincaidii [Smith] Phillips) is a federally listed Threatened plant of Willamette Valley prairies. Both low reproduction, due to seed coat dormancy, and competition from invasive plants may threaten the longterm viability of this species. In separate studies, I investigated seed germination and an invasive species...
An analytical method was adapted to extract semi-volatile organic compounds (SOCs) from conifer needles. Needles from Abies concolor
(white fir) and Pinus contortas (lodgepole pine) from Sequoia National Park (SNP) were collected during the summer of 2003, and analyzed for SOCs. The goal of this research was to determine differences...
Previous research suggests a link between litter size in ewes and differential excretion of fecal hormones. An accurate test for fetal number would be useful to sheep producers and a fecal hormone response could be utilized in such a test. Fifteen previously categorized fecal hormones were analyzed within fecal samples...
The nursery industry plays a critical role in Oregon's economy. An increase in wood-boring insect, or borer, activity has impacted the industry. The goal of this research is to determine key borer species in the nursery industry, flight times so targeted spray schedules can be established, and assess grower knowledge...
A genetic selection study to determine the effects on egg hatchability and subsequent chick performance of Japanese quail eggs incubated at a 38.9° C (102° F) dry bulb temperature (Selected, S) when compared to 37.8 C (100°F) (Control, C) was conducted for four consecutive generations. Eggs from a randomly mated...
Raspberry bushy dwarf virus (RBDV) infects red raspberry and black raspberry worldwide. Infection causes reduced vigor and drupelet abortion leading to crumbly fruit and reduced yields. While this crumbly fruit can still be used in juice, jam, and preserves, it cannot be used for the more valuable fresh and individually...
The diageotropica (dgt) mutation has been proposed to affect either auxin
perception or responsiveness in tomato plants. Auxins and cytokinins are plant
growth regulators known to interact with each other via a variety of mechanisms.
Here, we report the interactions of auxins and cytokinins in VFN8 wild-type and
dgt mutant...
Cell lines deficient in certain genes of the DNA mismatch repair (MMR) system show a marked resistance to the cell killing or apoptotic effects of DNA alkylating agents. The molecular mechanism for this resistance is not yet understood, but is currently of great interest because of the recent use of...
Llama reproductive physiology is unique when compared with other livestock species. Llamas carry 95-98% of all pregnancies in the left uterine horn. It is believed that there is a physiological difference between the uterine horns that contributes to this phenomenon. This study examined the uterine environment for protease and protease...
While previous experiments on the physiological activity of primary and secondary cyanolichens have been done, an analysis of photomorphs has never been attempted. Photomorphs of Peltigera britannica (Gyelnik) Hotan-Hartw. & Tonsberg were studied to compare the physiological response of a primary cyanolichen to an additional symbiotic partner (green algea) while...
Auxin and ethylene regulate many important aspects of plant growth and development and are
essential to the plants survival. They help regulate such diverse processes as cell elongation,
growth of adventitious roots, fruit growth, germination, and a variety of other processes. Few
studies have examined how the hormones auxin and...
A lexicon to define the sensory properties of melted Cheddar cheese was created
using a trained descriptive panel. The lexicon characterized appearance (surface rupture,
meltedness, oiliness, and edge browning) and texture (stringiness, stretchiness,
springiness, firmness, toothpull, smoothness, cohesiveness, denseness, and chewiness).
Three brands of commercially available shredded Cheddar cheese were...
Relationships among soil pH, redox potential, and ferrous iron content data obtained from
various field and lab methods were determined, with the following 4 objectives:
1.) Compare pH values obtained in the field to those obtained in the lab
2.) Evaluate different methods to measure pH in field
3.) Determine...
The following paper is an objective view on the viability of growing the truffle Tuber melanosporum in the Willamette Valley. Included in this study are the history of the truffle, biological cycle, habitat description, method of cultivation and an enterprise budget for commercial production in the Willamette Valley. The truffle,...
The psychoactive component of marijuana, A9-tetrahydrocannabinol (THC), is known
to have effects in humans that are mediated by the cannabinoid receptor (CB 1). Although a great deal of research has been done to confirm the interaction of exogenous cannabinoids with the CB 1 receptor, little is known about the receptor's...
Sarcocystis neurona is the 1responsible for the disease Equine Protozoal Myeloencephalitis (EPM). Exposure rates to S. neurona across the United States is about 50%, yet only about 2% of exposed horses develop EPM. The cell-mediated immune (CMI) response is hypothesized to be important for protective immunity against this disease. The...
Studies were conducted to assess influencing the effectiveness of sheep for grazing control of false brome (Brachypodium sylvaticum) an invasive grass species. Orphan lambs were exposed to false brome via grass extract in their milk and naturally reared lambs were exposed by grazing dense stands of false brome with their...
Motivation: It can take considerable amounts of time and effort to use existing computational tools to analyze a small RNA sequence for the purpose of determining if it is characteristic of microRNA. It is similarly tedious to search for homologs to known microRNA sequences in the rapidly growing collection of...
Collaboration is crucial when advancing in scientific research. One person cannot
study all aspects of a system. That is why it is important for the scientific community to
communicate with each other and stay updated on research being conducted in other labs
around the world. In my research, I was...
The highly conserved multi-protein mismatch repair (MMR) system is known for its ability to correct post replication errors in genomic DNA. A hallmark of MMR deficiency in all organisms is microsatellite instability. The initiating proteins in the eukaryotic MMR system are hetrodimers formed with an integral MSH2 subunit and one...
Butterfly bush (Buddleja davidii), an ornamental native to China, is an invasive species in Oregon and many other areas. In Oregon, butterfly bush invades disturbed areas, particularly riparian areas. The Oregon nursery industry has the highest farm-gate value of all agricultural commodities and butterfly bush is a significant plant to...